Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1273 ATGAAGCACTTTATGCAGCCAAGAAACGCTATCTTGCGAGATGCCCATGCCGCCGACCCGCCTTCTTCGCCCTGCCCTAGCGCCGGAATCAAGGGCAGGCCCCCTCGGAAGCCCAAGTCCTCCAAGGAGAATGCTCCGCCTTCAGATCCCAACTCCATGCTTCCGGATTCCAAACCCTCGCCGGCCAAGTTGAAGAGCCCGCTCCCTCCCCGCCCTCCGTCTTCCAATCCACTCAAGCGGAAGCTCAGCATGGAGGCCCTTCCCGAGAATTCCATCCCTGGCCTTTCTGATTCTGGTGTCAAGGTGGTGGTGCGTATGAGGCCACCGAGCAAGGACAGAGATGAAGGGGATAACATAGTACAGAAAGTTACCGATGATTCTTTGTCAATAAATGGACAAACGTTTACTTTCGATGCTGTTGCTGACACAGAGGCAACACAGCTTGATATCTTCCAGCTTGTAGGTGAGCCTCTTGTTGAAAATTGTATGGCAGGTTTCAACAGTTCCGTATTTGCATATGGGCAGACGGGAAGTGGAAAGACATATACCATGTGGGGTCCAGCCAATGCTTTGTCAGATGACAATATATTAAGCGAACAAAAAGGTTTAACTCCCCGTGTTTTTGAACGACTCTTTGCTCGCATAAATGAGGAACAAGTGAAGCATGCTGACAAGTTACTCAAGTATCAGTGTTGCTGTTCTTTTCTCGAGATTTACAATGAGCAAATCACTGATTTATTGGATCCAAATCAGAGAAACCTCCAGATTAGAGAAGATGTAAAAGCTGGTGTTTATGTTGAAAATCTAACGGAGGAGTGTGTATCCACAATGGCAGACGTTACTCAGCTTTTAATGAAGGTTTATTATCTTCCTCTTCCTGCTAATGGTTTGTCAAATAGGAGGACTGGTGCTACAAGTATTAATTCTGAGAGTTCGAGGTCACATACTGTTTTTACCTGCGTTGTTGAATCTCGATCCAAGAGGATGGCAGATGGTTTAAGTAGCTTTAAAACAAGTAGAATAAATCTTGTTGATTTAGCTGGTTCCGAGAGGCAGAAGCTAACAGGTGCAGCTGGGGAGCGATTGAAGGAAGCAGGAAATATCAACAGATCACTCTCACAACTCGGGAATCTAATCAATATTCTTGCCGAGATTTCTCAAACTGGAAAACAAAGGCACATCCCGTACAGAGATTCCAGGCTCACTTTTTTATTGCAAGAATCTCTCGGGGGAAATGCAAAATTAGCGATGATTTGTGCCATTTCTCCATCACAAAGCTGCAAGAGTGAAAGTTTTAGTACCTTGAGGTTTGCCCAGCGTGCCAAAACTATAAAAAACAAAGCTATTGTTAATGAAGTTATGCAAGATGATGTGAATCACTTGCGTGAAGTGATACGACAACTCAGGGACGAACTGCACCGTCTAAAGTCAAATGGAAATAGTGCAAACAACATAAATGGAGGTCACTCTGCAGCATGGATCCGCAGAAGTTTAAATCTACTAAAGTCTAGTATAAACCGTCCTCTTATGTTACCTCATGTGGATGATGATGGTGATGAAGAAATGGAAATTGATGAGGAAGCTGTTGAGAAGCTCTGTGATCAACTGGACAAACAAAATACTGGTTCTGAGGCTGGTGAAGCAAAGGAAACTAAAACTGTTAAATCAGGTTCATCAATTGCCTTGGAAGGAAATGAGTTAACTAAGTATCAGCCGTGTGCATCTGGAAGTGAATGTCAGAAGGAAAATTCTGATGATATAGATGTAAATATGGAAGAGGAAACGTCTGTACAAGATGAGGTTATGATTGTTGGTTCAACAGAAGAGCCTGTTTATGATACTCCAGTATGTTCCCGTGCTGATGTGCCTAACCATCATAACCTTGAAGAACAAAATCAAACAGCGACAAACTTGCTTGACAAAATCTTCTCAGATGAACCCTCTGAGAATAATATTCTGAGTTCTTCAATGGAGAGAGTAAGTGGAGAACTAAAAACTTCAGGAGATGGCCCCTTGTGTACATCCTCTGAACCTCTTAGTGAATTTCAGGCTAACAAGTCCGAATTAGATATGGTCAACAATTCCTCAAATGGAATTCTTAGTTGTGTTTCTCCTCCAGGCCTCAGCATAGTTCCTTGTGATGTGTCACCAGTTCTCAAATCGCCTACTCCAAGTGTTTCACCTAGAATCAGTGATAGCAGGAAAAGCTTGAGGACTTCAACGATGTTGTCTGCTTCACAGAAAGATCTTCAGGCAGAGACTAAACTTGGCTTAGATCATCTGCAAAAATCATTTGAAAAGTCCTTGAGAAGGAGCTCCGCTAATGCATTTTCAATGTCTACCCAGGGCAAGAATACTGCTGTAACAACAGAGCAGTTGGCTGCAAGCATCCGAAATGGGCTTGAAATTATTGATAGTTGTCGTCAGAGTTCAGCATTGAGAAGGTCTTCATTCAGATTTTCATATAAGCCTGCAGAAAAGGTTAATATACCAATAAACAAAATTGATGTTGGCGTGCAAACATCTTGCGGTGATGAGGTTGCTGGTGAAAACCTTGTTATGTGCAGCAGTTGCAGAATTAGAAAGCAGCTGGAGGTTAGAGAGGAGAATGGCAGTTCAGATCTGCAATTAGTACCTGTGGATGGTCCAGACTCTGCTGAGAAATCCAGGATACAAGTTCCTAAAGCAGTTGAGAAAGTTCTTGCTGGGGCTATCAGAAGAGAAATGGCACTTGAGGAGTATTGCAACAAGCAAGCATTTGATATTAGTCAACTCAACCGTTTGGTACAACAGTACAAGCATGAGAGAGAATGCAATGCTGTGCTTGGGCAAGCCAGAGAGGACAAAATTCTTCGCCTTGAGAGCCTCATGGATGGCGTTTTACCAACTGAGGAGTTCATGGAGGAGGAACTTGTGTCCCTCACTCATGAGCATAAGGTTTTAAAGGAAAAATATGAGAATCACCCTGAAGTCCTGCAGACACGAATGGAGTTGAAAAAAGTTCAAGATGAATTGCAAAGTTACAGGAATTTCTGTGACTTGGGTGAGAGAGAAGTGCTAATGGAAGAGATTCAGGATTTAAGAAGTCAGCTGCAATATTACATTGACTCACCTTGCACATCCTCACGAAAGCAAAACTCTCTTTTGCAATTGACTTATTCTGAGCCTAGTAGTGCTCCAGCTCTTGGTGCAATTCCAGAGTCAACAGAAGAGAATGCTGAGGAGAAACTCGAACTGGAGAGAGTTCGTTGGACTGAGGCAGAGAGCAAGTGGATCTCTCTTTCAGAAGAACTGAGAAGTGAACTTGAAGCAAGCAGGTTGCTAGCAGAAAAAAGAAAACGAGAGTTTGAAGCTGAGAAGAAATGTGCTCAAGAGTTGGAGGAAGCTATGCAAATGGCCATGGCAGGGCATGCACGGTTGCTAGAACAGTATGCAGACTTGGAAGAAAAGCACATGCAACTGCTTTTAAGACACAGAAAGATACAGGATGGAATTGGGGATGTCAAAAAGGCAGCTGCTAGAGCAGGAGTTAAGGGTGCAGAGTCTAAGTTTATAAATGCCCTTGCTGCTGAAATTTCAGCACTAAAAGTTGAAAGAGAGCGAGAAAGGCGCTATCTAAGAGATGAGAACAAAGGACTTCAAGCTCAATTGAGAGATACTGCTGAAGCTGTGCAGGCTGCAGGTGAATTGCTTGTGCGGCTTAAAGAAGCAGAAGAGGGAGTTGCTGCTGCTCAGAAGCGAGCAATTGAAGCTGAGCAAGAAGCTGAGAAGGCCTACAAACAGATCGATAAATTGAAGAAAAAACATGAAAAGGAGATCAGCACACTCAATGCTCTCACGGCCGATTCTCGTTTACCTAAGGAAGCTATAAGGCCTGCTTATGATGACGAAACTAGCAAAGCCAAATACGACTTGGACGAATCCCATGATCAGCGCTGGAGAGAGGAATTTGAGCCATTCTACAATGGTGAAGACGGTGAGCTACCTAAACTCTCAGAACCCTCCTGGTTCTCTGGATATGATAGATGCAACATATAG 4038 43.54 MKHFMQPRNAILRDAHAADPPSSPCPSAGIKGRPPRKPKSSKENAPPSDPNSMLPDSKPSPAKLKSPLPPRPPSSNPLKRKLSMEALPENSIPGLSDSGVKVVVRMRPPSKDRDEGDNIVQKVTDDSLSINGQTFTFDAVADTEATQLDIFQLVGEPLVENCMAGFNSSVFAYGQTGSGKTYTMWGPANALSDDNILSEQKGLTPRVFERLFARINEEQVKHADKLLKYQCCCSFLEIYNEQITDLLDPNQRNLQIREDVKAGVYVENLTEECVSTMADVTQLLMKVYYLPLPANGLSNRRTGATSINSESSRSHTVFTCVVESRSKRMADGLSSFKTSRINLVDLAGSERQKLTGAAGERLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPSQSCKSESFSTLRFAQRAKTIKNKAIVNEVMQDDVNHLREVIRQLRDELHRLKSNGNSANNINGGHSAAWIRRSLNLLKSSINRPLMLPHVDDDGDEEMEIDEEAVEKLCDQLDKQNTGSEAGEAKETKTVKSGSSIALEGNELTKYQPCASGSECQKENSDDIDVNMEEETSVQDEVMIVGSTEEPVYDTPVCSRADVPNHHNLEEQNQTATNLLDKIFSDEPSENNILSSSMERVSGELKTSGDGPLCTSSEPLSEFQANKSELDMVNNSSNGILSCVSPPGLSIVPCDVSPVLKSPTPSVSPRISDSRKSLRTSTMLSASQKDLQAETKLGLDHLQKSFEKSLRRSSANAFSMSTQGKNTAVTTEQLAASIRNGLEIIDSCRQSSALRRSSFRFSYKPAEKVNIPINKIDVGVQTSCGDEVAGENLVMCSSCRIRKQLEVREENGSSDLQLVPVDGPDSAEKSRIQVPKAVEKVLAGAIRREMALEEYCNKQAFDISQLNRLVQQYKHERECNAVLGQAREDKILRLESLMDGVLPTEEFMEEELVSLTHEHKVLKEKYENHPEVLQTRMELKKVQDELQSYRNFCDLGEREVLMEEIQDLRSQLQYYIDSPCTSSRKQNSLLQLTYSEPSSAPALGAIPESTEENAEEKLELERVRWTEAESKWISLSEELRSELEASRLLAEKRKREFEAEKKCAQELEEAMQMAMAGHARLLEQYADLEEKHMQLLLRHRKIQDGIGDVKKAAARAGVKGAESKFINALAAEISALKVERERERRYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEGVAAAQKRAIEAEQEAEKAYKQIDKLKKKHEKEISTLNALTADSRLPKEAIRPAYDDETSKAKYDLDESHDQRWREEFEPFYNGEDGELPKLSEPSWFSGYDRCNI 1345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36011639 36020499 - Maker00005148 Lcy11g1273 647174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1273 1345 FunFam Kinesin-like protein KIN-12F 95 483 - -
Lcy11g1273 1345 Pfam Kinesin motor domain 121 444 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy11g1273 1345 Coils Coil 1123 1157 - -
Lcy11g1273 1345 Coils Coil 451 485 - -
Lcy11g1273 1345 PRINTS Kinesin heavy chain signature 165 186 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy11g1273 1345 PRINTS Kinesin heavy chain signature 340 358 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy11g1273 1345 PRINTS Kinesin heavy chain signature 394 415 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy11g1273 1345 PRINTS Kinesin heavy chain signature 305 322 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy11g1273 1345 MobiDBLite consensus disorder prediction 62 76 - -
Lcy11g1273 1345 MobiDBLite consensus disorder prediction 1 79 - -
Lcy11g1273 1345 Gene3D Kinesin motor domain 95 478 IPR036961 -
Lcy11g1273 1345 PANTHER KINESIN-LIKE PROTEIN KIN-12D 95 483 IPR044986 -
Lcy11g1273 1345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 477 IPR027417 -
Lcy11g1273 1345 SMART kinesin_4 97 452 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy11g1273 1345 Coils Coil 964 984 - -
Lcy11g1273 1345 ProSitePatterns Kinesin motor domain signature. 339 350 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Lcy11g1273 1345 Coils Coil 1099 1119 - -
Lcy11g1273 1345 ProSiteProfiles Kinesin motor domain profile. 99 444 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy11g1273 1345 Coils Coil 1227 1282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1273 K10400 - - csv:101216258 2201.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1273 Lcy-Chr11:36011639 Lcy8g1062 Lcy-Chr8:36444039 7.00E-88 dispersed
Lcy11g1273 Lcy-Chr11:36011639 Lcy6g1676 Lcy-Chr6:31514238 2.11E-178 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g977 . . . . . . . . . . . . . . . . . Bhi01g01173 . . . . . Lcy11g1273 . . . . . . . . . . Cone15ag0087 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005762 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 38