Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1274 ATGGAGGACGATTTCGAGTTCCCATCTGCAACCAATGTGGACGAGGAAATGGCCATTCCTGAGGACGAAGCGGAGAGTCAGGTTCTGAAGGTTGGCGAGGAGAAGGAGATTGGAAAGAGCGGGCTGAAGAAGAAACTTGTTAAAGAAGGTGAAGGGTGGGAAACTCCCGACACTGGAGATGAAGTTGAAGTGCATTATACGGGAACCCTTCTTGATGGGACTAAATTCGACTCGAGCCGTGACCGAGGAACGCCGTTTAAGTTCAAGCTCGGCGAAGGGCAAGTGATTAAAGGATGGGATGAAGGTATCAAAACAATGAAAAAGGGTGAAAATGCAGTTTTCACGATTCCCCCTGAATTGGCCTATGGAGAGTCTGGCTCTCCTCCAACAATTCCACCGAACGCTACTCTTCAATTTGATGTCGAGCTACTTTCATGGCACAGCGTCAAAGATATCTGTCAAGATGGAGGAATCTTCAAAAAGATTCTTGTTAAAGGAGATGGTTGGGATAAACCGAAGCATCTAGACGAAGTATTGGTTACTTACGAGGCTCGTCTTGAAGACGGAACACTGATCTCAAAGTCTGATGGGGTTGAATTCACTGTTGAAAAGGGCTACTTCTGCCCTGCATTGGCAACATCTGTGAAGACGATGAAGAAGGGAGAGAAAGTTCTGTTGACTGTGAGGCCACAATATGCATTTGGGGAGTCTGGCAGGCCTGCAGCTGGGGAAGAAGGGGCTGTGCCTCCTAATGCCACTCTTCAGATAACCCTTGAATTGGTTTCTTGGAAAGCTGTTACAGACATTAATAAGGACAAGAAGGTCCTGAAAAAGACCCTGAAGGAGGGAGAAGGATATGATCAGCCAAATGATGGAGCAGTGGTTCAAGTGAAGCTTACCGGTAAACTGGCGGATGGGACGATTTTTACTAAGAAGGGCGATGATGAGAAGCCTTTTGAGTTCAAAACTGACGAAGAACAAGTCATCGAAGGACTTGATTTGGCTGTGAGAAAGATGAAGAAAGGAGAAGTTGCCTTGGTGACCATCCATCCACAATATGCTTTTGGATCTGCCGCCTCGACTCAAGATCTAGCTACAGTGCCTGCAAACTCAACTGTATATTACGAAATTGAGCTGGTTTCGTTCGTCAAAGAAAAAGAATCTTGGGAACTGAGCACACCAGAGAAAATAGAAGCAGCCGGGAAAAAGAAGGAAGAAGGAAATGTTTTGTTCAAAGCTGGAAAATATGACAGAGCATCAAGAAGATATGAACAGGCTGTACGCTACATTGAATATGATACTTCTTTCAACGATGAGGAGAAGCAACAGAGCAAGGCACTAAAAGTTTCGTGCAACCTCAACAATGCTGCGTGCAAACTGAAGGTTAAAGACTACAGGCAAGCTGAAAAGCTCTGTACAAAGGTGTTGGAACTCGATAGTAGAAATGTGAAAGCTCTCTATAGAAGGGCACAAGCATATATTCAACTTGTTGATCTTGATCTTGCTGAGCAGGACATCAAGAAAGCCCTTGAGATAGACCCGGATAACAGGGAAGTGAAGATCGAATACCGACAGTTGAAGGAAAAAGTGAGGGAATACAACAAGAAAGATGCACAGTTTTATGGCAACATTTTTGCAAAAATGAACAAGTTGGAGCAGGCAAAGTCTGCTAGTGCAGCAGGAGGGAAGCAGGAGGCAGTGCCAATGACCATTGATAGCAAAGCTTGA 1728 44.97 MEDDFEFPSATNVDEEMAIPEDEAESQVLKVGEEKEIGKSGLKKKLVKEGEGWETPDTGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFKLGEGQVIKGWDEGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDICQDGGIFKKILVKGDGWDKPKHLDEVLVTYEARLEDGTLISKSDGVEFTVEKGYFCPALATSVKTMKKGEKVLLTVRPQYAFGESGRPAAGEEGAVPPNATLQITLELVSWKAVTDINKDKKVLKKTLKEGEGYDQPNDGAVVQVKLTGKLADGTIFTKKGDDEKPFEFKTDEEQVIEGLDLAVRKMKKGEVALVTIHPQYAFGSAASTQDLATVPANSTVYYEIELVSFVKEKESWELSTPEKIEAAGKKKEEGNVLFKAGKYDRASRRYEQAVRYIEYDTSFNDEEKQQSKALKVSCNLNNAACKLKVKDYRQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNREVKIEYRQLKEKVREYNKKDAQFYGNIFAKMNKLEQAKSASAAGGKQEAVPMTIDSKA 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36024958 36028656 - Maker00005252 Lcy11g1274 647175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1274 575 SMART tpr_5 483 516 IPR019734 GO:0005515(InterPro)
Lcy11g1274 575 SMART tpr_5 400 433 IPR019734 GO:0005515(InterPro)
Lcy11g1274 575 SMART tpr_5 449 482 IPR019734 GO:0005515(InterPro)
Lcy11g1274 575 PANTHER PEPTIDYLPROLYL ISOMERASE 145 262 IPR050754 -
Lcy11g1274 575 FunFam Peptidylprolyl isomerase 388 543 - -
Lcy11g1274 575 Gene3D - 150 264 IPR046357 GO:0003755(InterPro)
Lcy11g1274 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 292 383 IPR001179 GO:0003755(InterPro)
Lcy11g1274 575 FunFam Peptidylprolyl isomerase 265 385 - -
Lcy11g1274 575 Pfam Tetratricopeptide repeat 483 516 IPR019734 GO:0005515(InterPro)
Lcy11g1274 575 Coils Coil 516 536 - -
Lcy11g1274 575 Gene3D - 265 385 IPR046357 GO:0003755(InterPro)
Lcy11g1274 575 SUPERFAMILY TPR-like 394 549 IPR011990 GO:0005515(InterPro)
Lcy11g1274 575 Gene3D - 31 149 IPR046357 GO:0003755(InterPro)
Lcy11g1274 575 Gene3D Tetratricopeptide repeat domain 386 543 IPR011990 GO:0005515(InterPro)
Lcy11g1274 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 59 147 IPR001179 GO:0003755(InterPro)
Lcy11g1274 575 ProSiteProfiles TPR repeat profile. 483 516 IPR019734 GO:0005515(InterPro)
Lcy11g1274 575 MobiDBLite consensus disorder prediction 1 22 - -
Lcy11g1274 575 MobiDBLite consensus disorder prediction 1 27 - -
Lcy11g1274 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 175 264 IPR001179 GO:0003755(InterPro)
Lcy11g1274 575 SUPERFAMILY FKBP-like 23 159 - -
Lcy11g1274 575 FunFam Peptidylprolyl isomerase 32 150 - -
Lcy11g1274 575 FunFam Peptidylprolyl isomerase 151 264 - -
Lcy11g1274 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 170 261 IPR001179 GO:0003755(InterPro)
Lcy11g1274 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 53 144 IPR001179 GO:0003755(InterPro)
Lcy11g1274 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 287 380 IPR001179 GO:0003755(InterPro)
Lcy11g1274 575 SUPERFAMILY FKBP-like 268 400 - -
Lcy11g1274 575 SUPERFAMILY FKBP-like 151 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2249 Lcy-Chr10:46258639 Lcy11g1274 Lcy-Chr11:36024958 5.31E-21 dispersed
Lcy11g1029 Lcy-Chr11:31280333 Lcy11g1274 Lcy-Chr11:36024958 1.65E-13 dispersed
Lcy11g1274 Lcy-Chr11:36024958 Lcy3g1329 Lcy-Chr3:39591246 2.79E-280 dispersed
Lcy11g1274 Lcy-Chr11:36024958 Lcy6g0242 Lcy-Chr6:2130529 4.45E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1274 K09571 - csv:101210041 1009.98