Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1274 | ATGGAGGACGATTTCGAGTTCCCATCTGCAACCAATGTGGACGAGGAAATGGCCATTCCTGAGGACGAAGCGGAGAGTCAGGTTCTGAAGGTTGGCGAGGAGAAGGAGATTGGAAAGAGCGGGCTGAAGAAGAAACTTGTTAAAGAAGGTGAAGGGTGGGAAACTCCCGACACTGGAGATGAAGTTGAAGTGCATTATACGGGAACCCTTCTTGATGGGACTAAATTCGACTCGAGCCGTGACCGAGGAACGCCGTTTAAGTTCAAGCTCGGCGAAGGGCAAGTGATTAAAGGATGGGATGAAGGTATCAAAACAATGAAAAAGGGTGAAAATGCAGTTTTCACGATTCCCCCTGAATTGGCCTATGGAGAGTCTGGCTCTCCTCCAACAATTCCACCGAACGCTACTCTTCAATTTGATGTCGAGCTACTTTCATGGCACAGCGTCAAAGATATCTGTCAAGATGGAGGAATCTTCAAAAAGATTCTTGTTAAAGGAGATGGTTGGGATAAACCGAAGCATCTAGACGAAGTATTGGTTACTTACGAGGCTCGTCTTGAAGACGGAACACTGATCTCAAAGTCTGATGGGGTTGAATTCACTGTTGAAAAGGGCTACTTCTGCCCTGCATTGGCAACATCTGTGAAGACGATGAAGAAGGGAGAGAAAGTTCTGTTGACTGTGAGGCCACAATATGCATTTGGGGAGTCTGGCAGGCCTGCAGCTGGGGAAGAAGGGGCTGTGCCTCCTAATGCCACTCTTCAGATAACCCTTGAATTGGTTTCTTGGAAAGCTGTTACAGACATTAATAAGGACAAGAAGGTCCTGAAAAAGACCCTGAAGGAGGGAGAAGGATATGATCAGCCAAATGATGGAGCAGTGGTTCAAGTGAAGCTTACCGGTAAACTGGCGGATGGGACGATTTTTACTAAGAAGGGCGATGATGAGAAGCCTTTTGAGTTCAAAACTGACGAAGAACAAGTCATCGAAGGACTTGATTTGGCTGTGAGAAAGATGAAGAAAGGAGAAGTTGCCTTGGTGACCATCCATCCACAATATGCTTTTGGATCTGCCGCCTCGACTCAAGATCTAGCTACAGTGCCTGCAAACTCAACTGTATATTACGAAATTGAGCTGGTTTCGTTCGTCAAAGAAAAAGAATCTTGGGAACTGAGCACACCAGAGAAAATAGAAGCAGCCGGGAAAAAGAAGGAAGAAGGAAATGTTTTGTTCAAAGCTGGAAAATATGACAGAGCATCAAGAAGATATGAACAGGCTGTACGCTACATTGAATATGATACTTCTTTCAACGATGAGGAGAAGCAACAGAGCAAGGCACTAAAAGTTTCGTGCAACCTCAACAATGCTGCGTGCAAACTGAAGGTTAAAGACTACAGGCAAGCTGAAAAGCTCTGTACAAAGGTGTTGGAACTCGATAGTAGAAATGTGAAAGCTCTCTATAGAAGGGCACAAGCATATATTCAACTTGTTGATCTTGATCTTGCTGAGCAGGACATCAAGAAAGCCCTTGAGATAGACCCGGATAACAGGGAAGTGAAGATCGAATACCGACAGTTGAAGGAAAAAGTGAGGGAATACAACAAGAAAGATGCACAGTTTTATGGCAACATTTTTGCAAAAATGAACAAGTTGGAGCAGGCAAAGTCTGCTAGTGCAGCAGGAGGGAAGCAGGAGGCAGTGCCAATGACCATTGATAGCAAAGCTTGA | 1728 | 44.97 | MEDDFEFPSATNVDEEMAIPEDEAESQVLKVGEEKEIGKSGLKKKLVKEGEGWETPDTGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFKLGEGQVIKGWDEGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDICQDGGIFKKILVKGDGWDKPKHLDEVLVTYEARLEDGTLISKSDGVEFTVEKGYFCPALATSVKTMKKGEKVLLTVRPQYAFGESGRPAAGEEGAVPPNATLQITLELVSWKAVTDINKDKKVLKKTLKEGEGYDQPNDGAVVQVKLTGKLADGTIFTKKGDDEKPFEFKTDEEQVIEGLDLAVRKMKKGEVALVTIHPQYAFGSAASTQDLATVPANSTVYYEIELVSFVKEKESWELSTPEKIEAAGKKKEEGNVLFKAGKYDRASRRYEQAVRYIEYDTSFNDEEKQQSKALKVSCNLNNAACKLKVKDYRQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNREVKIEYRQLKEKVREYNKKDAQFYGNIFAKMNKLEQAKSASAAGGKQEAVPMTIDSKA | 575 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 36024958 | 36028656 | - | Maker00005252 | Lcy11g1274 | 647175 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1274 | 575 | SMART | tpr_5 | 483 | 516 | IPR019734 | GO:0005515(InterPro) | |
Lcy11g1274 | 575 | SMART | tpr_5 | 400 | 433 | IPR019734 | GO:0005515(InterPro) | |
Lcy11g1274 | 575 | SMART | tpr_5 | 449 | 482 | IPR019734 | GO:0005515(InterPro) | |
Lcy11g1274 | 575 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 145 | 262 | IPR050754 | - | |
Lcy11g1274 | 575 | FunFam | Peptidylprolyl isomerase | 388 | 543 | - | - | |
Lcy11g1274 | 575 | Gene3D | - | 150 | 264 | IPR046357 | GO:0003755(InterPro) | |
Lcy11g1274 | 575 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 292 | 383 | IPR001179 | GO:0003755(InterPro) | |
Lcy11g1274 | 575 | FunFam | Peptidylprolyl isomerase | 265 | 385 | - | - | |
Lcy11g1274 | 575 | Pfam | Tetratricopeptide repeat | 483 | 516 | IPR019734 | GO:0005515(InterPro) | |
Lcy11g1274 | 575 | Coils | Coil | 516 | 536 | - | - | |
Lcy11g1274 | 575 | Gene3D | - | 265 | 385 | IPR046357 | GO:0003755(InterPro) | |
Lcy11g1274 | 575 | SUPERFAMILY | TPR-like | 394 | 549 | IPR011990 | GO:0005515(InterPro) | |
Lcy11g1274 | 575 | Gene3D | - | 31 | 149 | IPR046357 | GO:0003755(InterPro) | |
Lcy11g1274 | 575 | Gene3D | Tetratricopeptide repeat domain | 386 | 543 | IPR011990 | GO:0005515(InterPro) | |
Lcy11g1274 | 575 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 59 | 147 | IPR001179 | GO:0003755(InterPro) | |
Lcy11g1274 | 575 | ProSiteProfiles | TPR repeat profile. | 483 | 516 | IPR019734 | GO:0005515(InterPro) | |
Lcy11g1274 | 575 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lcy11g1274 | 575 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Lcy11g1274 | 575 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 175 | 264 | IPR001179 | GO:0003755(InterPro) | |
Lcy11g1274 | 575 | SUPERFAMILY | FKBP-like | 23 | 159 | - | - | |
Lcy11g1274 | 575 | FunFam | Peptidylprolyl isomerase | 32 | 150 | - | - | |
Lcy11g1274 | 575 | FunFam | Peptidylprolyl isomerase | 151 | 264 | - | - | |
Lcy11g1274 | 575 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 170 | 261 | IPR001179 | GO:0003755(InterPro) | |
Lcy11g1274 | 575 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 53 | 144 | IPR001179 | GO:0003755(InterPro) | |
Lcy11g1274 | 575 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 287 | 380 | IPR001179 | GO:0003755(InterPro) | |
Lcy11g1274 | 575 | SUPERFAMILY | FKBP-like | 268 | 400 | - | - | |
Lcy11g1274 | 575 | SUPERFAMILY | FKBP-like | 151 | 266 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g2249 | Lcy-Chr10:46258639 | Lcy11g1274 | Lcy-Chr11:36024958 | 5.31E-21 | dispersed | |
Lcy11g1029 | Lcy-Chr11:31280333 | Lcy11g1274 | Lcy-Chr11:36024958 | 1.65E-13 | dispersed | |
Lcy11g1274 | Lcy-Chr11:36024958 | Lcy3g1329 | Lcy-Chr3:39591246 | 2.79E-280 | dispersed | |
Lcy11g1274 | Lcy-Chr11:36024958 | Lcy6g0242 | Lcy-Chr6:2130529 | 4.45E-20 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1274 | K09571 | - | csv:101210041 | 1009.98 |