Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1291 ATGGCCAAGGCATTTGCATCAGTTATTGAAGGAAAGAGTTGTATCATTTCTGATCAAAGTGGATCTGGTAAGACATTAGCATATCTTGCACCATTAATCCAGCGTCTGAGGCAGGAAGAACTCGAAGGACTTCGAAAATCTTCTTCACAAAGTCCCCAAATTGTTATCATTGTGCCAACAGCAGAATTGGCTTCTCAGGTATTACAGAATTGCCGATCCATTTCAAAATTTGGGGTGCCATTTAGGTCTATGGTTGTGACAGGTGGTTTCCGGCAGAGGACTCAACTTGAAAATCTACAGGAAGGTGTTGATGTTCTAATAGCAACACCTGGTCGTTTGATGATTCTAATAAATGAAGGCTTCTTGCAGTTATCAAATCTAAGATGTGCTGTAATGGACGAGGTAGATATCCTTTTTAATGATGAGGACTTTGAAGGTGCACTGCGGACTTTAATGAAATCTGCACCTGTTAACACCCAATATCTATTTGTGACTGCAACTTTACCAGTTGACATATACAATACACTAGTAGAAAATTTTCCTGATTGTGAAGTGATCATGGGACCTGGAGTTCACCGGATAAGTCCTTTCCTTGAAGAGGTTCTTGTAGATTGCAGTGGTGAAGACGAGCAGAACAAAACACCGGATGCTGCTTTCTCGAATAAAAAAGATGCCCTCCTGCAGATTGCAGAAGGAACTCCAGTCTCAAAAACTATTGTTTTCTGTAACAAGATTGAGACATGTAGAAGAGTTGAAAATGCATTGCAGCGTTTTGATAAAAAAGGTAGCCATTTGCAAGTCTTTCCGTTTCATGCTGCCCTAGCAAGAGAGTCGCGGCTTGCAAATATGGAAGCATTCACCAATTCCCATTCTAACCAAGTATCCCAGTTCTTGGTTTGCACTGATAGGGCATCACGTGGAATTGATTTTCCAAATGTGGATCACGTCATACTCTTCGACTTCCCCCGTGATCCTAGCGAGTATGTTCGCCGTGTTGGAAGAACTGCCAGAGGTGCTACAGGTAAAGGAAAAGCATTCATCTTCGTGGTCGGAAAACAGGTATCCCTTGCGCGGAGGATAGTTGAAAGAAACAGGAAAGGTCACCCGTTACATGATGTACCATCTGCTTATGAGCTTACATACTAA 1146 42.15 MAKAFASVIEGKSCIISDQSGSGKTLAYLAPLIQRLRQEELEGLRKSSSQSPQIVIIVPTAELASQVLQNCRSISKFGVPFRSMVVTGGFRQRTQLENLQEGVDVLIATPGRLMILINEGFLQLSNLRCAVMDEVDILFNDEDFEGALRTLMKSAPVNTQYLFVTATLPVDIYNTLVENFPDCEVIMGPGVHRISPFLEEVLVDCSGEDEQNKTPDAAFSNKKDALLQIAEGTPVSKTIVFCNKIETCRRVENALQRFDKKGSHLQVFPFHAALARESRLANMEAFTNSHSNQVSQFLVCTDRASRGIDFPNVDHVILFDFPRDPSEYVRRVGRTARGATGKGKAFIFVVGKQVSLARRIVERNRKGHPLHDVPSAYELTY 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36355016 36362898 + Maker00031480 Lcy11g1291 647192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1291 381 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 221 381 IPR001650 -
Lcy11g1291 381 Gene3D - 2 189 IPR027417 -
Lcy11g1291 381 Gene3D - 198 372 IPR027417 -
Lcy11g1291 381 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 1 290 IPR014013 GO:0005524(InterPro)
Lcy11g1291 381 Pfam Helicase conserved C-terminal domain 222 337 IPR001650 -
Lcy11g1291 381 SMART helicmild6 249 339 IPR001650 -
Lcy11g1291 381 CDD SF2_C_DEAD 221 349 - -
Lcy11g1291 381 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 5 186 IPR014001 -
Lcy11g1291 381 Pfam DEAD/DEAH box helicase 3 171 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Lcy11g1291 381 SMART ultradead3 2 201 IPR014001 -
Lcy11g1291 381 CDD DEADc 2 186 - -
Lcy11g1291 381 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 2 378 - GO:0003729(PANTHER)
Lcy11g1291 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 360 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1291 K13179 - - csv:101214337 697.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1291 Lcy-Chr11:36355016 Lcy5g2446 Lcy-Chr5:47222489 2.06E-33 dispersed
Lcy11g1291 Lcy-Chr11:36355016 Lcy6g1053 Lcy-Chr6:11411750 1.22E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g288 . . . . . Bpe14g01079 . . . . . Cma14g01547 . Car14g01365 Sed02g1093 . Cpe03g01293 Bhi01g01151 Tan10g1142 Cmetu06g0925 . Hepe05g1330 . Lcy11g1291 . . . . . . . . . . . Lsi05g01373 . . Cme06g00846 Blo02g00460 . . Bda13g00235 . . . . . . Cmo14g01583 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011458 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 31