Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1297 | ATGAGAGTTGGGAAGTATGAGTTGGGGAAAACTCTTGGAGAAGGCAATTTCGGCAAGGTGAAGTTGGCCGCCGACCACCGTACCGGCCGCCGTTACGCCGTCAAGATCGTCGACAAGACCAAGATTCTCCATCTCAACTTCTCCGATCAGATTAAGCGTGAAATAAGTACTCTAAAGCTCCTCCGGCATCCGAATGTTGTTAGACTCTACGAGGTTTTAGCTAGTAAGACGAAGATTTATATGGTTATGGAGTGCGCCTCTGGTGGTGAATTGTTTGATAGAATCGAATCAAAAGGTAAGGTGGATGAAGCTGAAGGACGGAGACTATTCCAGCAGCTTATTGATGGCCTCAGCTACTGCCACGATAAAGGAGTTTACCACAGGGATCTCAAGCTGGAAAACGTGCTTGTTGATGCTAAGGGAAACATTAAGATTTCTGATTTTGGCCTCAGTGCTTTACCGCAGAATTGCAGGGAAGATGGTTTGCTGCACACCACCTGTGGAAGTCCCAACTATGTTGCACCAGAGGTACTTGCTAATAGAGGATACGATGGAGCCGCCTCTGATATATGGTCATGTGGGGTTATCTTGTATGTTATTCTTACGGCTTGTCTTCCTTTCGACGAAACCAATCTGGCTTTACTTTATAAAAAGACTTTGAGGGGGGATTTTCAGATACCCAAATGGTTATCAGCAGGTGCCAGAAATTTGATTAGGAGAACTCTTGATCCCAACCCCAATACTCGGATTACAATGGCAGGAATCAAAGAGGATGAGTGGTTCAAGACTGACTATAGTCCTGCTTCTCCTTGTGATGATGATGATGAGGAGGAGGGTCCACTCATTGATCAGGATGATGCCATCTCAACGCATGATGAGCCATCTGACGTGGAAAACAGCCCAGAATCTCCCTCTATTATCAATGCGTTTGAGTTAATTGGGATGTCTTCAAGTTTGGATCTGTCTGGCTTCTTTGAGCAAGAGGATGTTTCTGAGAGGAAGATCAGATTTACGTCCAATCATTCTGCTAAAGACCTGCTTGAGAGAATCGAGGTTATCGCAACCGATATGGGATTTCGAGTCCAAAAGAAGAGTGGAAAGGTTGGTACTCCCCAGTTCTTAGCATTGAAAGAATCTGGTAGATGTCGATACGTTAACAACCCGATGGAAATGGTTTAA | 1179 | 44.95 | MRVGKYELGKTLGEGNFGKVKLAADHRTGRRYAVKIVDKTKILHLNFSDQIKREISTLKLLRHPNVVRLYEVLASKTKIYMVMECASGGELFDRIESKGKVDEAEGRRLFQQLIDGLSYCHDKGVYHRDLKLENVLVDAKGNIKISDFGLSALPQNCREDGLLHTTCGSPNYVAPEVLANRGYDGAASDIWSCGVILYVILTACLPFDETNLALLYKKTLRGDFQIPKWLSAGARNLIRRTLDPNPNTRITMAGIKEDEWFKTDYSPASPCDDDDEEEGPLIDQDDAISTHDEPSDVENSPESPSIINAFELIGMSSSLDLSGFFEQEDVSERKIRFTSNHSAKDLLERIEVIATDMGFRVQKKSGKVGTPQFLALKESGRCRYVNNPMEMV | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 36462403 | 36469606 | - | Maker00031303 | Lcy11g1297 | 647198 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1297 | 392 | SMART | serkin_6 | 6 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g1297 | 392 | ProSiteProfiles | Protein kinase domain profile. | 6 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g1297 | 392 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 125 | 137 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy11g1297 | 392 | FunFam | Non-specific serine/threonine protein kinase | 1 | 304 | - | - | |
Lcy11g1297 | 392 | Pfam | NAF domain | 304 | 363 | IPR004041 | GO:0007165(InterPro) | |
Lcy11g1297 | 392 | Pfam | Protein kinase domain | 6 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g1297 | 392 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 300 | IPR011009 | - | |
Lcy11g1297 | 392 | FunFam | Non-specific serine/threonine protein kinase | 1 | 85 | - | - | |
Lcy11g1297 | 392 | ProSiteProfiles | NAF domain profile. | 302 | 326 | IPR018451 | GO:0007165(InterPro) | |
Lcy11g1297 | 392 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 308 | - | - | |
Lcy11g1297 | 392 | ProSitePatterns | Protein kinases ATP-binding region signature. | 12 | 35 | IPR017441 | GO:0005524(InterPro) | |
Lcy11g1297 | 392 | MobiDBLite | consensus disorder prediction | 284 | 298 | - | - | |
Lcy11g1297 | 392 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 4 | 374 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Lcy11g1297 | 392 | CDD | CIPK_C | 308 | 368 | - | - | |
Lcy11g1297 | 392 | MobiDBLite | consensus disorder prediction | 265 | 302 | - | - | |
Lcy11g1297 | 392 | Gene3D | Kinase associated domain 1, KA1 | 309 | 382 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1297 | Lcy-Chr11:36462403 | Lcy12g0913 | Lcy-Chr12:13498007 | 3.96E-145 | dispersed | |
Lcy1g1974 | Lcy-Chr1:24160406 | Lcy11g1297 | Lcy-Chr11:36462403 | 2.10E-40 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65453 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1297 | K07198 | - | csv:101205987 | 699.893 |