Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1297 ATGAGAGTTGGGAAGTATGAGTTGGGGAAAACTCTTGGAGAAGGCAATTTCGGCAAGGTGAAGTTGGCCGCCGACCACCGTACCGGCCGCCGTTACGCCGTCAAGATCGTCGACAAGACCAAGATTCTCCATCTCAACTTCTCCGATCAGATTAAGCGTGAAATAAGTACTCTAAAGCTCCTCCGGCATCCGAATGTTGTTAGACTCTACGAGGTTTTAGCTAGTAAGACGAAGATTTATATGGTTATGGAGTGCGCCTCTGGTGGTGAATTGTTTGATAGAATCGAATCAAAAGGTAAGGTGGATGAAGCTGAAGGACGGAGACTATTCCAGCAGCTTATTGATGGCCTCAGCTACTGCCACGATAAAGGAGTTTACCACAGGGATCTCAAGCTGGAAAACGTGCTTGTTGATGCTAAGGGAAACATTAAGATTTCTGATTTTGGCCTCAGTGCTTTACCGCAGAATTGCAGGGAAGATGGTTTGCTGCACACCACCTGTGGAAGTCCCAACTATGTTGCACCAGAGGTACTTGCTAATAGAGGATACGATGGAGCCGCCTCTGATATATGGTCATGTGGGGTTATCTTGTATGTTATTCTTACGGCTTGTCTTCCTTTCGACGAAACCAATCTGGCTTTACTTTATAAAAAGACTTTGAGGGGGGATTTTCAGATACCCAAATGGTTATCAGCAGGTGCCAGAAATTTGATTAGGAGAACTCTTGATCCCAACCCCAATACTCGGATTACAATGGCAGGAATCAAAGAGGATGAGTGGTTCAAGACTGACTATAGTCCTGCTTCTCCTTGTGATGATGATGATGAGGAGGAGGGTCCACTCATTGATCAGGATGATGCCATCTCAACGCATGATGAGCCATCTGACGTGGAAAACAGCCCAGAATCTCCCTCTATTATCAATGCGTTTGAGTTAATTGGGATGTCTTCAAGTTTGGATCTGTCTGGCTTCTTTGAGCAAGAGGATGTTTCTGAGAGGAAGATCAGATTTACGTCCAATCATTCTGCTAAAGACCTGCTTGAGAGAATCGAGGTTATCGCAACCGATATGGGATTTCGAGTCCAAAAGAAGAGTGGAAAGGTTGGTACTCCCCAGTTCTTAGCATTGAAAGAATCTGGTAGATGTCGATACGTTAACAACCCGATGGAAATGGTTTAA 1179 44.95 MRVGKYELGKTLGEGNFGKVKLAADHRTGRRYAVKIVDKTKILHLNFSDQIKREISTLKLLRHPNVVRLYEVLASKTKIYMVMECASGGELFDRIESKGKVDEAEGRRLFQQLIDGLSYCHDKGVYHRDLKLENVLVDAKGNIKISDFGLSALPQNCREDGLLHTTCGSPNYVAPEVLANRGYDGAASDIWSCGVILYVILTACLPFDETNLALLYKKTLRGDFQIPKWLSAGARNLIRRTLDPNPNTRITMAGIKEDEWFKTDYSPASPCDDDDEEEGPLIDQDDAISTHDEPSDVENSPESPSIINAFELIGMSSSLDLSGFFEQEDVSERKIRFTSNHSAKDLLERIEVIATDMGFRVQKKSGKVGTPQFLALKESGRCRYVNNPMEMV 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36462403 36469606 - Maker00031303 Lcy11g1297 647198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1297 392 SMART serkin_6 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1297 392 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1297 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1297 392 FunFam Non-specific serine/threonine protein kinase 1 304 - -
Lcy11g1297 392 Pfam NAF domain 304 363 IPR004041 GO:0007165(InterPro)
Lcy11g1297 392 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1297 392 SUPERFAMILY Protein kinase-like (PK-like) 3 300 IPR011009 -
Lcy11g1297 392 FunFam Non-specific serine/threonine protein kinase 1 85 - -
Lcy11g1297 392 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165(InterPro)
Lcy11g1297 392 Gene3D Transferase(Phosphotransferase) domain 1 2 308 - -
Lcy11g1297 392 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Lcy11g1297 392 MobiDBLite consensus disorder prediction 284 298 - -
Lcy11g1297 392 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 374 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy11g1297 392 CDD CIPK_C 308 368 - -
Lcy11g1297 392 MobiDBLite consensus disorder prediction 265 302 - -
Lcy11g1297 392 Gene3D Kinase associated domain 1, KA1 309 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1297 Lcy-Chr11:36462403 Lcy12g0913 Lcy-Chr12:13498007 3.96E-145 dispersed
Lcy1g1974 Lcy-Chr1:24160406 Lcy11g1297 Lcy-Chr11:36462403 2.10E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65453 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1297 K07198 - csv:101205987 699.893