Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1300 ATGGAGCAGAGAGGGAAATCGACTGCTGTGAACTCTACCATGTCATCTCGCGGTGGAAGGGTTTCTTCGAAGGCTGTGGAGTCGCCGAAGCGGATGGTTTCTGTATCGGCCGTTCAATCGACGCCTCAGTCTGTTGTGAAGAAGCAGAGTTCGAGAGTTAGCAGATCTCTGACGCCGAATCCTCCGAAGAAGGGGAGGGATGGTGAGAATGTTGGAGTTCCGGCTCGGATGGTCAACCGCGGTGGTCTTAAGCAGGTTTCGCAGCGGCGTTCTTCTGGTAGTGGTTCGTGTGTGAATGTTGAGGATTGTAATGGAGGTAAGAGTGAATTGCAGGAGAAGCTTTGTTTCGCTGAGGATTTGATTAAGGATTTGCAGTCTCAATTGGTGGTGTTGAAGGAGGAGTTGCAGAAGTCTCAGAGCTTGAACCTGGAACTTCAATCGCAGAACGATTTGCTCGTTCGTGACCTAGCCGCCGCTGAAGCGAAGTTCGCTAATGCTAGCAATAACGACCAGAGGGAATCAGTTGCAGAGTACTCGAAGCGAAACGCCGAGGACAATCAGAAACTAGAAAATGGAAAGTTGCAGGCCCAACCATCAAGTTCGTGTCGGAATGTTAGGGATTCGAAATGCAAGGCGACTCCACCACCACCACGGGCACCGCCGCCGCCGCCGCCGCCTCTTCCTCTCCAGTCCTTGCCCCGAGCAGTGGCCACTCAGAAATCTCCAGACCTCATACGCCTCTTTCACTCGTTAAGAAAGAAAGAGGGGAAAAGAGATCCTCCATTGTTGGGGAAACCGGCTGCGATCAATGCGCATAATAGCATTGTTGGGGAAATTCAGAATCGTTCTGCGCATCTTTTAGCGATAAAAGCAGACATTGAAACCAAAGGAGAGTTCATCAATGGCCTGATTGATAAGGTGCTCGTTGCAGCCTATACGGACATAGAGGATGTTCTCAAGTTTGTCGATTGGCTTGATTCACAACTCTCATCATTGGCTGACGAGCGGGCTGTGTTGAAACATTTCAAGTGGCCTGAGAAGAAAGCCGACGCCATGCGAGAAGCAGCCATAGAATACCGTGCGCTTAAACTGCTGGAAAATGAGATCTCTCTGTACAAGGATGACACTAATTCTCCATGTGAGGCAGCCTTGAAGAAGATGGCGAGCTTGTTAGACAAGTCGGAACGAGGCATACAACGCCTAATCGGGCTTCGAAATACCGTCATGCATTCTTATCAGGACCTGAAACTCCCAACAAATTGGATGCTAGACTCCGGAATCATGAGTAAGATAAAGCAAGCCTCTATGAATCTGGCCAAGATGTACATGAAAAGGGTGAAAACAGAGCTCGATTCAATTCGCAGTTCGGATAAAGAATCGAACCAGGAGTCTCTTCTACTTCAGGGCGTTCATTTTGCATACAGAACTCACCAGTTTGCTGGAGGGCTTGATTCAGAAACATTATGTGCTTTTGAGGAAATAAAACAATGGGTTCCAAGACAGGTGCTGGGAGGGTCCCATTCTCAAGGATGGATACTTGGCATACCATCATCATAA 1557 48.75 MEQRGKSTAVNSTMSSRGGRVSSKAVESPKRMVSVSAVQSTPQSVVKKQSSRVSRSLTPNPPKKGRDGENVGVPARMVNRGGLKQVSQRRSSGSGSCVNVEDCNGGKSELQEKLCFAEDLIKDLQSQLVVLKEELQKSQSLNLELQSQNDLLVRDLAAAEAKFANASNNDQRESVAEYSKRNAEDNQKLENGKLQAQPSSSCRNVRDSKCKATPPPPRAPPPPPPPLPLQSLPRAVATQKSPDLIRLFHSLRKKEGKRDPPLLGKPAAINAHNSIVGEIQNRSAHLLAIKADIETKGEFINGLIDKVLVAAYTDIEDVLKFVDWLDSQLSSLADERAVLKHFKWPEKKADAMREAAIEYRALKLLENEISLYKDDTNSPCEAALKKMASLLDKSERGIQRLIGLRNTVMHSYQDLKLPTNWMLDSGIMSKIKQASMNLAKMYMKRVKTELDSIRSSDKESNQESLLLQGVHFAYRTHQFAGGLDSETLCAFEEIKQWVPRQVLGGSHSQGWILGIPSS 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36489520 36493802 + Maker00031752 Lcy11g1300 647201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1300 518 MobiDBLite consensus disorder prediction 213 231 - -
Lcy11g1300 518 MobiDBLite consensus disorder prediction 1 74 - -
Lcy11g1300 518 MobiDBLite consensus disorder prediction 174 188 - -
Lcy11g1300 518 MobiDBLite consensus disorder prediction 164 231 - -
Lcy11g1300 518 MobiDBLite consensus disorder prediction 1 22 - -
Lcy11g1300 518 MobiDBLite consensus disorder prediction 189 207 - -
Lcy11g1300 518 MobiDBLite consensus disorder prediction 33 58 - -
Lcy11g1300 518 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 89 496 IPR040265 GO:0009658(PANTHER)|GO:0009707(PANTHER)
Lcy11g1300 518 Coils Coil 121 169 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1300 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1300 Lcy-Chr11:36489520 Lcy1g0088 Lcy-Chr1:797649 2.27E-79 dispersed
Lcy11g1300 Lcy-Chr11:36489520 Lcy7g0410 Lcy-Chr7:3516491 2.78E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g269 . . . . . . . . . . . . Car06g01351 . Sed12g0731 Cpe08g00129 . Bhi01g01139 Tan10g1128 Cmetu06g1150 . Hepe05g1340 . Lcy11g1300 . . . . . . . . . . . . . . Cme06g00837 . Blo07g00125 . . . . . . . Cmo06g01585 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013373 0 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 27