Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1303 ATGTCGGCTTTATCCAGAGGTCTCATTTCTCGTTTTCGTCTTTTCTCGATCAATTCCGGCGCTTCTCCTGCAATTACTTCTTCTTCTTCTTCTTCTTCTTCAGCGTGGACAAATGCGTCTTGTTGTTACTTCATCCGTGCTTTCAGTACCCAGGATTTGATCCAGGCCAGCGATGGCTCTTCGCTCTCTTCTCCGATTATTGAAGCTAAACCTGGTGTTATGGCCCCTAACTCGAAGCGGACGGGTGTTATTGCCGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCCAGGATACCCATCACTGTGCTCTGGGTTGATGATAATATTGTGTCTCAGGTCAAGACTATTGAGAAAGAAGGCATCACAGCTCTCCAGATTGGCTGTGGACAGAAGAAGGCAAAGCATTTGACGAAACCTGAATTAGGTCATTTTAGGGCTCAAGGTGTTCCGTTGAAGAGGAAACTGAGGGAGTTTCCAGTGTCAGAAGATGCACTTCTTCCAGTTGGTACAACAATTGGCGTTCGTCATTTTGTCCCTGGACAGTTTGTTGATGTGACAGGAATCACGAGAGGGAAAGGTTTTCAGGGAGTGATGAAAAGGCATGGATTTAAGGGAATGCCGGCATCCCATGGAGCATCATTATCCCACAGAAGCCCTGGTTCTACCGGTCAGAGGGATGCTCCTGGAAAGGTTTTTAAAGGTAAAAAGATGCCTGGGCGTATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGGTCTACAAAATTGATCCTGCAAGAAACTTGATTTGGGTTAGAGGACAAGTCCCTGGCGCAGAAGGAAACTTTGTATTTATAAAAGACGCCGTCTACAAGAAACCCGATAAATCAATCCTTCCATTTCCTACCTACTTCGCAACCGAGGATGAGGACACGGAGAAGTTGGAACCCCTCGTTGCTGATCTTGGAGAAGTAGATCCATTTATGGTTGGAGATTGA 987 46.61 MSALSRGLISRFRLFSINSGASPAITSSSSSSSSAWTNASCCYFIRAFSTQDLIQASDGSSLSSPIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLREFPVSEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQGVMKRHGFKGMPASHGASLSHRSPGSTGQRDAPGKVFKGKKMPGRMGGKQRTVKNVWVYKIDPARNLIWVRGQVPGAEGNFVFIKDAVYKKPDKSILPFPTYFATEDEDTEKLEPLVADLGEVDPFMVGD 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36518890 36523504 + Maker00032128 Lcy11g1303 647204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1303 328 FunFam 50S ribosomal protein L3 110 175 - -
Lcy11g1303 328 Hamap Large ribosomal subunit protein uL3 [rplC]. 80 286 IPR019927 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lcy11g1303 328 ProSitePatterns Ribosomal protein L3 signature. 180 203 IPR019926 -
Lcy11g1303 328 NCBIfam 50S ribosomal protein L3 82 283 IPR019927 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lcy11g1303 328 PANTHER 50S RIBOSOMAL PROTEIN L3 61 318 IPR019927 GO:0003735(InterPro)|GO:0003735(PANTHER)|GO:0005762(PANTHER)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lcy11g1303 328 Gene3D - 112 175 - -
Lcy11g1303 328 Gene3D Translation factors 205 289 - -
Lcy11g1303 328 SUPERFAMILY Translation proteins 74 305 IPR009000 -
Lcy11g1303 328 FunFam 50S ribosomal protein L3 207 288 - -
Lcy11g1303 328 Pfam Ribosomal protein L3 178 261 IPR000597 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lcy11g1303 328 MobiDBLite consensus disorder prediction 208 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1303 K02906 - - csv:101205048 563.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1303 Lcy-Chr11:36518890 Lcy13g0559 Lcy-Chr13:7102787 2.05E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g260 . Blo12g00372 Bda03g00838 . Bpe04g00793 . Bma04g00736 . . . . . Car06g01348 . Sed02g1104 Cpe08g00132 . Bhi01g01131 Tan10g1125 Cmetu06g1995 . Hepe05g1343 . Lcy11g1303 . . . . . . . Cone14ag0677 Cone15ag0688 . . Lsi05g01384 . . Cme06g00832 . . . . . . . . . Cmo06g01582 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011772 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 3 1 1 30