Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1313 ATGGCTCTCGACGCCGAAGCGGCACCAGCGGCGGAGTTGGCGCTTGCTGATACCGACATCAACTGGAACAGGTTGGACAAGACAAAGTTTCATATAATTGGGGCAATACTGTTTACTGCTCAGTCAGCCTTGTTACATCCAACAGCAGTTGTTAAAACTAGAATGCAAGTAGCTGGATCTGGTCTATCTCACATGCGTGGACTGTCAGTTTTCTGGAATATATTGAAGTCTGATGGAATCTCTGGCTTATTTAGAGGTTTCGGTACTTCAGCGGTTGGATCATTACCTGGTAGAGTACTGGCTTTAACATCACTAGAAGTATCAAAGGACATAATGTTGAAATACACTGGAACTCTGGAAATGCCTGAAGCAACACGTGTTGGTCTTGCTAATGGAGTGGCGGGCATGATCTCAAATTTGGTTTCATGCATATACTATGTGCCATTGGACGTGACTTGCCAGAGGCTGATGGTTCAAGGGCTACCTGGAACCACCTTCTGCAATGGCCCAGTTGATGTTGTCAGAAAAGTGATGAAGGCTGAAGGATTTCGTGGTTTATATAGGGGTTTTGGATTAACAGCTGTAACTCAGTCCCCAGCATCTGCTCTCTGGTGGGGTGTCTATGGTGCTGCTCAGCATATTATCTGGAGGAGCTTAGGATATCGAGATAGCATGGAGAAGAAACCTTCTCACATGGAGATGGTGACGGTTCAGGCTGCAGCAGGAATGGTGGCAGGTGCTTGTTCCTCTGTTATTACAACTCCCGTAGACACAGTAAAGACGCGACTTCAGGTCATTGATAACTATGGTATTGGAAGACCATCTGTGCTGAAGACTACAAGAGCACTTCTCAAGGAAGATGGGTGGCTGGGATTTTATAGAGGCTTTGGACCTCGGTTCTTGAATATGTCACTTTATGGAACCACGATGATTGTCACTTATGAACTGATCACTTCTCCCACCGCCCACCAGAGTAAGCGTGAGAGAAAAAATGGCCACTATATAAATGCAAGGTTGCAATTCCATCGGAGTCTACTGCCTGATGAATTTAGGAAGAAGATGCCGGGCCTTACAATCGGCGATACAGTACCAAATCTTCAAGCTGATAGCACCCATGGAAAGATCACTTTACATGACTACATCGACGGCAGCTGGGCCATCATCTTCTCTCACCCAGGTGATTTCACTCCCGTGTGTACCACGGAGCTAGGGATGATGGCTTCTCAGGCAGAGGAGTTTGGTCGACGAGGTGTGAAGCTCATAGGATTGTCTTGCGATGATGTTCTATCTCATACCGAGTGGATCAAAGATATTGAAGCCTACAATCTCGAGGCAATGTTTACAGGTGTGATACCGGAGATCACTAAGAAAGGGAAGAAAGTGACATACCCAATACTGGCGGATCCCAAACGGGAGATCATCAAGGAACTGAACATGATCGACCCCGACGAGAAAGACTCATCAGGAAACCTCATGCCATCGCGGGCATTGCACATCATCGGTCCGGACAAGAAGGTGAAGCTGAGCTTCCTGTACCCAGCAAGTACAGGGAGGAACATGGAGGAAGTGATGAGGGTTTTGGAGTCATTGCAGAAGGCTGCAAAGCACAAGGTTTGCACTCCAGTGAACTGGAAGCCGGGCGATAAGTGCATCATTCCGCCGAGTGTGAGTAATGAGCAGGCCAAGCAAATGTACCCTCAAGGCTTTGAAACAGTGGAGCTTCCATCAAAGATGGAATACATGCGTTTCACTGCTGTGTGA 1761 47.3 MALDAEAAPAAELALADTDINWNRLDKTKFHIIGAILFTAQSALLHPTAVVKTRMQVAGSGLSHMRGLSVFWNILKSDGISGLFRGFGTSAVGSLPGRVLALTSLEVSKDIMLKYTGTLEMPEATRVGLANGVAGMISNLVSCIYYVPLDVTCQRLMVQGLPGTTFCNGPVDVVRKVMKAEGFRGLYRGFGLTAVTQSPASALWWGVYGAAQHIIWRSLGYRDSMEKKPSHMEMVTVQAAAGMVAGACSSVITTPVDTVKTRLQVIDNYGIGRPSVLKTTRALLKEDGWLGFYRGFGPRFLNMSLYGTTMIVTYELITSPTAHQSKRERKNGHYINARLQFHRSLLPDEFRKKMPGLTIGDTVPNLQADSTHGKITLHDYIDGSWAIIFSHPGDFTPVCTTELGMMASQAEEFGRRGVKLIGLSCDDVLSHTEWIKDIEAYNLEAMFTGVIPEITKKGKKVTYPILADPKREIIKELNMIDPDEKDSSGNLMPSRALHIIGPDKKVKLSFLYPASTGRNMEEVMRVLESLQKAAKHKVCTPVNWKPGDKCIIPPSVSNEQAKQMYPQGFETVELPSKMEYMRFTAV 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36633564 36638991 - Maker00031449 Lcy11g1313 647214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1313 586 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 214 IPR018108 -
Lcy11g1313 586 FunFam Peroxiredoxin PRX1 357 518 - -
Lcy11g1313 586 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 7 322 - -
Lcy11g1313 586 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 111 IPR018108 -
Lcy11g1313 586 Pfam AhpC/TSA family 359 507 IPR000866 GO:0016209(InterPro)|GO:0016491(InterPro)
Lcy11g1313 586 SUPERFAMILY Thioredoxin-like 357 584 IPR036249 -
Lcy11g1313 586 Gene3D Mitochondrial carrier domain 31 337 IPR023395 -
Lcy11g1313 586 Pfam Mitochondrial carrier protein 130 216 IPR018108 -
Lcy11g1313 586 Pfam Mitochondrial carrier protein 237 317 IPR018108 -
Lcy11g1313 586 Pfam Mitochondrial carrier protein 32 115 IPR018108 -
Lcy11g1313 586 Gene3D Glutaredoxin 355 518 - -
Lcy11g1313 586 SUPERFAMILY Mitochondrial carrier 23 316 IPR023395 -
Lcy11g1313 586 ProSiteProfiles Thioredoxin domain profile. 357 532 IPR013766 -
Lcy11g1313 586 Pfam C-terminal domain of 1-Cys peroxiredoxin 530 568 IPR019479 GO:0051920(InterPro)
Lcy11g1313 586 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 320 IPR018108 -
Lcy11g1313 586 FunFam 1-Cys peroxiredoxin 519 586 - -
Lcy11g1313 586 CDD PRX_1cys 359 584 IPR045020 GO:0051920(InterPro)|GO:0098869(InterPro)
Lcy11g1313 586 Gene3D Antioxidant, Horf6; Chain A, domain2 519 586 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2070 Lcy-Chr10:44769764 Lcy11g1313 Lcy-Chr11:36633564 2.46E-97 dispersed
Lcy11g1313 Lcy-Chr11:36633564 Lcy2g0523 Lcy-Chr2:4506948 1.22E-16 dispersed
Lcy11g1313 Lcy-Chr11:36633564 Lcy12g0645 Lcy-Chr12:7960818 7.47E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1313 K15121 - csv:101213375 596.66