Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1313 | ATGGCTCTCGACGCCGAAGCGGCACCAGCGGCGGAGTTGGCGCTTGCTGATACCGACATCAACTGGAACAGGTTGGACAAGACAAAGTTTCATATAATTGGGGCAATACTGTTTACTGCTCAGTCAGCCTTGTTACATCCAACAGCAGTTGTTAAAACTAGAATGCAAGTAGCTGGATCTGGTCTATCTCACATGCGTGGACTGTCAGTTTTCTGGAATATATTGAAGTCTGATGGAATCTCTGGCTTATTTAGAGGTTTCGGTACTTCAGCGGTTGGATCATTACCTGGTAGAGTACTGGCTTTAACATCACTAGAAGTATCAAAGGACATAATGTTGAAATACACTGGAACTCTGGAAATGCCTGAAGCAACACGTGTTGGTCTTGCTAATGGAGTGGCGGGCATGATCTCAAATTTGGTTTCATGCATATACTATGTGCCATTGGACGTGACTTGCCAGAGGCTGATGGTTCAAGGGCTACCTGGAACCACCTTCTGCAATGGCCCAGTTGATGTTGTCAGAAAAGTGATGAAGGCTGAAGGATTTCGTGGTTTATATAGGGGTTTTGGATTAACAGCTGTAACTCAGTCCCCAGCATCTGCTCTCTGGTGGGGTGTCTATGGTGCTGCTCAGCATATTATCTGGAGGAGCTTAGGATATCGAGATAGCATGGAGAAGAAACCTTCTCACATGGAGATGGTGACGGTTCAGGCTGCAGCAGGAATGGTGGCAGGTGCTTGTTCCTCTGTTATTACAACTCCCGTAGACACAGTAAAGACGCGACTTCAGGTCATTGATAACTATGGTATTGGAAGACCATCTGTGCTGAAGACTACAAGAGCACTTCTCAAGGAAGATGGGTGGCTGGGATTTTATAGAGGCTTTGGACCTCGGTTCTTGAATATGTCACTTTATGGAACCACGATGATTGTCACTTATGAACTGATCACTTCTCCCACCGCCCACCAGAGTAAGCGTGAGAGAAAAAATGGCCACTATATAAATGCAAGGTTGCAATTCCATCGGAGTCTACTGCCTGATGAATTTAGGAAGAAGATGCCGGGCCTTACAATCGGCGATACAGTACCAAATCTTCAAGCTGATAGCACCCATGGAAAGATCACTTTACATGACTACATCGACGGCAGCTGGGCCATCATCTTCTCTCACCCAGGTGATTTCACTCCCGTGTGTACCACGGAGCTAGGGATGATGGCTTCTCAGGCAGAGGAGTTTGGTCGACGAGGTGTGAAGCTCATAGGATTGTCTTGCGATGATGTTCTATCTCATACCGAGTGGATCAAAGATATTGAAGCCTACAATCTCGAGGCAATGTTTACAGGTGTGATACCGGAGATCACTAAGAAAGGGAAGAAAGTGACATACCCAATACTGGCGGATCCCAAACGGGAGATCATCAAGGAACTGAACATGATCGACCCCGACGAGAAAGACTCATCAGGAAACCTCATGCCATCGCGGGCATTGCACATCATCGGTCCGGACAAGAAGGTGAAGCTGAGCTTCCTGTACCCAGCAAGTACAGGGAGGAACATGGAGGAAGTGATGAGGGTTTTGGAGTCATTGCAGAAGGCTGCAAAGCACAAGGTTTGCACTCCAGTGAACTGGAAGCCGGGCGATAAGTGCATCATTCCGCCGAGTGTGAGTAATGAGCAGGCCAAGCAAATGTACCCTCAAGGCTTTGAAACAGTGGAGCTTCCATCAAAGATGGAATACATGCGTTTCACTGCTGTGTGA | 1761 | 47.3 | MALDAEAAPAAELALADTDINWNRLDKTKFHIIGAILFTAQSALLHPTAVVKTRMQVAGSGLSHMRGLSVFWNILKSDGISGLFRGFGTSAVGSLPGRVLALTSLEVSKDIMLKYTGTLEMPEATRVGLANGVAGMISNLVSCIYYVPLDVTCQRLMVQGLPGTTFCNGPVDVVRKVMKAEGFRGLYRGFGLTAVTQSPASALWWGVYGAAQHIIWRSLGYRDSMEKKPSHMEMVTVQAAAGMVAGACSSVITTPVDTVKTRLQVIDNYGIGRPSVLKTTRALLKEDGWLGFYRGFGPRFLNMSLYGTTMIVTYELITSPTAHQSKRERKNGHYINARLQFHRSLLPDEFRKKMPGLTIGDTVPNLQADSTHGKITLHDYIDGSWAIIFSHPGDFTPVCTTELGMMASQAEEFGRRGVKLIGLSCDDVLSHTEWIKDIEAYNLEAMFTGVIPEITKKGKKVTYPILADPKREIIKELNMIDPDEKDSSGNLMPSRALHIIGPDKKVKLSFLYPASTGRNMEEVMRVLESLQKAAKHKVCTPVNWKPGDKCIIPPSVSNEQAKQMYPQGFETVELPSKMEYMRFTAV | 586 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 36633564 | 36638991 | - | Maker00031449 | Lcy11g1313 | 647214 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1313 | 586 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 126 | 214 | IPR018108 | - | |
Lcy11g1313 | 586 | FunFam | Peroxiredoxin PRX1 | 357 | 518 | - | - | |
Lcy11g1313 | 586 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J | 7 | 322 | - | - | |
Lcy11g1313 | 586 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 26 | 111 | IPR018108 | - | |
Lcy11g1313 | 586 | Pfam | AhpC/TSA family | 359 | 507 | IPR000866 | GO:0016209(InterPro)|GO:0016491(InterPro) | |
Lcy11g1313 | 586 | SUPERFAMILY | Thioredoxin-like | 357 | 584 | IPR036249 | - | |
Lcy11g1313 | 586 | Gene3D | Mitochondrial carrier domain | 31 | 337 | IPR023395 | - | |
Lcy11g1313 | 586 | Pfam | Mitochondrial carrier protein | 130 | 216 | IPR018108 | - | |
Lcy11g1313 | 586 | Pfam | Mitochondrial carrier protein | 237 | 317 | IPR018108 | - | |
Lcy11g1313 | 586 | Pfam | Mitochondrial carrier protein | 32 | 115 | IPR018108 | - | |
Lcy11g1313 | 586 | Gene3D | Glutaredoxin | 355 | 518 | - | - | |
Lcy11g1313 | 586 | SUPERFAMILY | Mitochondrial carrier | 23 | 316 | IPR023395 | - | |
Lcy11g1313 | 586 | ProSiteProfiles | Thioredoxin domain profile. | 357 | 532 | IPR013766 | - | |
Lcy11g1313 | 586 | Pfam | C-terminal domain of 1-Cys peroxiredoxin | 530 | 568 | IPR019479 | GO:0051920(InterPro) | |
Lcy11g1313 | 586 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 233 | 320 | IPR018108 | - | |
Lcy11g1313 | 586 | FunFam | 1-Cys peroxiredoxin | 519 | 586 | - | - | |
Lcy11g1313 | 586 | CDD | PRX_1cys | 359 | 584 | IPR045020 | GO:0051920(InterPro)|GO:0098869(InterPro) | |
Lcy11g1313 | 586 | Gene3D | Antioxidant, Horf6; Chain A, domain2 | 519 | 586 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g2070 | Lcy-Chr10:44769764 | Lcy11g1313 | Lcy-Chr11:36633564 | 2.46E-97 | dispersed | |
Lcy11g1313 | Lcy-Chr11:36633564 | Lcy2g0523 | Lcy-Chr2:4506948 | 1.22E-16 | dispersed | |
Lcy11g1313 | Lcy-Chr11:36633564 | Lcy12g0645 | Lcy-Chr12:7960818 | 7.47E-08 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1313 | K15121 | - | csv:101213375 | 596.66 |