Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1316 ATGGATCATTCAAAGTCTAATTCATATTATGTTGAGGAATCTTGTGTTCGTCTTTTGACTCTATCCATGAATCATTTGGAGTCTCCCACGAAAGGTTCTAAGATGCAAGAGACTTTATACCCTGTCAAGATTTTTAGTCAATCGCAAGTTTCTCTTCCTGGTTCATACAACACACTATTCACCAAAGGGGTAGCAAGTCTATCTTCTCCTAAGAAGATTTCTCCCTGTTTTGATTCTGATGGAGAATCAGATGTTAGTATGAGTATTGAGGAGTCAATTTTTCATGTTCCAGAATTTGAGTTGGTAGATCAAGTTGAAGATGATTCATTTGCTGAAGCTTTTGAAATTTTTTTTGAAGTTAATGTTCAAGGTGTCGATAATATAGAGGGAGTGCTTTTGGTTATTGGTTCTTCAGTTTGGTGGCTTCTCATTGGAGGTTCTCTGGCGTTGTTACTTGCACATGCGAAGGTTGAGTCTGTGAAATCAAAAGAAGCAGCTGAACAGAAACGACTGAAAAAGAGTAGCTGGCGTGCAAACTCTGAAGACACTTCTGATGAGGATGCTTATGAGGGATCACATTTAGGTGAAGAACAATTGACCAAAGAGGAATGGCAGGCAATTAATAAGTTGCTAAGTTACCAAGAAGATGAGGACTCGCCAGCACATTCTGGAAAGGATGGGCAGAATATGATACAGTTTTTGTTTACAGTATCAGTTAATCAGGCTGCTGCAAGAATCATTAACATAAATCAGACTGAGATTGTTTGCGGAAGATTTGAGCAGCTTTCTGTGTCAACCAAGTTAAAACAACGTAGCACCTACTGTGATGTGTTACTGAAATTTTATGGTTTATCTGCTCCAGAAGGTTCACTTGCTCAGAGTGTCTCTAGCGAGCAAAAGGCAAATGCATTGGCTGCTAGCTTTATACGCATGCCAGTGGGGGAAAATATTGACTGGAGACTGTCTGCGACTATTTCTCCATGCCATGTGACGATTTTGATGGACAGTTGTGATCGTTTTTTAGAGTTTTTGAGGAGAAGTAATGAAGTTAGCCCTACTGTTGCATTGGAAACTGCAGCAGCTTTGCAGGTAAAATTTGAGAAAGTGACTCGTAGAGCGCAAGAGCAATTCCAAACTGCATTAGAGGAACAAAGCAGGTTTGCTCTTGACATTGATCTTGATGCCCCAAAAGTTAGAGTTCCTATCAGAACATGCAGCTCTTCCAAATGTGATAGTCATTTTCTTTTGGATTTTGGTCATTTTATGCTGCGAACGATGGGTTCCGAGTCTGATGAACAAAGACATAGCTTGTATTCTCGATTTTTTATATCTGGAAGAGATATTGCTGCATTGTTCAGGGATTGTGGTCCTGAATGTCAGACATGCTCAGATTATAGTAATCAACCCATTGTTTCTCGTTTACTAAAGAAGGAAGCTCACAACGTATATCCTCTTCTCGATCAGTGTGGAATGGCAGTAATAGTAGATCAGATAAAGGTACCTCACCCAAGCTACCCATCTACACGAATCTCTATTCAAGTGCCTAACCTTGGCATTCACATCTCACCGTCGAGATACTGCAAACTCATGGAACTAATAAATACTATCTATGGTAAAATGGAGACTTATGGTCAAAACTCAGATACGGGGGGTAATTTTCAACCTGTACTTGCTCCGTGGGGTCCTGTGGATCTCACTGCTGATGCAAGAATCCTAGTGTGGAGGGGTATAGGCAATTCTGTGGCTCAGTGGAAGCCTTGTTATCTTGTTTTATCCGGCTTATATATTTATGTTTTGGAGACGGGAAAGTCCCAGATTTTCCAACGCTATTTGAGTGTTGCTGGCAAGCAAGTCCATGAAGTTCCATCAACAAGTGTGGGTGGATCGTTGTTTTGTATTGCGCTGAGTTCCAGAGGCATGGACATTCAGAAGCTTCAGTGTATTGAAGAGGCCATCCATCCTGGTGCATTATGCGTTCCTCTCATTCAGAATACCCTGGTTATCTTTTGGGCATTGCTCCTTTGCTTCCAATATTGGACTACAGTCATTGATGCTTTTGGGTAG 2064 40.99 MDHSKSNSYYVEESCVRLLTLSMNHLESPTKGSKMQETLYPVKIFSQSQVSLPGSYNTLFTKGVASLSSPKKISPCFDSDGESDVSMSIEESIFHVPEFELVDQVEDDSFAEAFEIFFEVNVQGVDNIEGVLLVIGSSVWWLLIGGSLALLLAHAKVESVKSKEAAEQKRLKKSSWRANSEDTSDEDAYEGSHLGEEQLTKEEWQAINKLLSYQEDEDSPAHSGKDGQNMIQFLFTVSVNQAAARIININQTEIVCGRFEQLSVSTKLKQRSTYCDVLLKFYGLSAPEGSLAQSVSSEQKANALAASFIRMPVGENIDWRLSATISPCHVTILMDSCDRFLEFLRRSNEVSPTVALETAAALQVKFEKVTRRAQEQFQTALEEQSRFALDIDLDAPKVRVPIRTCSSSKCDSHFLLDFGHFMLRTMGSESDEQRHSLYSRFFISGRDIAALFRDCGPECQTCSDYSNQPIVSRLLKKEAHNVYPLLDQCGMAVIVDQIKVPHPSYPSTRISIQVPNLGIHISPSRYCKLMELINTIYGKMETYGQNSDTGGNFQPVLAPWGPVDLTADARILVWRGIGNSVAQWKPCYLVLSGLYIYVLETGKSQIFQRYLSVAGKQVHEVPSTSVGGSLFCIALSSRGMDIQKLQCIEEAIHPGALCVPLIQNTLVIFWALLLCFQYWTTVIDAFG 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36715229 36728718 - Maker00031713 Lcy11g1316 647217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1316 687 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 151 646 - -
Lcy11g1316 687 MobiDBLite consensus disorder prediction 171 195 - -
Lcy11g1316 687 Pfam VPS13, central RBG modules 311 536 IPR031642 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1316 K19525 - - csv:101213129 926.006
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1316 Lcy-Chr11:36715229 Lcy1g1910 Lcy-Chr1:22241741 1.84E-59 dispersed
Lcy11g1316 Lcy-Chr11:36715229 Lcy12g1463 Lcy-Chr12:33403551 3.31E-284 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g222 . Blo12g00381 Bda03g00826 . Bpe04g00783 . Bma04g00725 . . . . Cma14g01572 . Car14g01385 . . Cpe03g01313 Bhi01g01112 . . . Hepe05g1356 . Lcy11g1316 . . . . . . . Cone14ag0690 . . . Lsi05g01400 . . . . . . . . . . . . . Cmo14g01605 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020970 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 4