Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1320 ATGGACGAATCGAAAAGCGTGGTGAAGCACATTTTGCTGGCGAAATTCAAAGATGAAATCACTGAGGAACAGATCGACCAACTCATTAAAGGATATGCCAATCTCGTCAATCTCATTGAACCTATGAAGGCTTTCCAGTGGTCCAGATTCAAGATTCTCGAAGCGCAGGGGAGTAAATTAGATGAAAGCCTTCATTTAGACATTGAGAGGCTTCTTGAGAAGAGGATCATGCCTGAGATGCTAGTCTACTTCAACAACAAAGGTCATTCTCCTCAAGAGGATGACATAAAGCATTTTAAAGGCCACCTTGGAAGATCCAGGTTGAGATTACTGTATCCAAGGACAATTTCAGTAGTCATAATAACATTACGGTTGCTGGTAGGAGAAGCTGAGTACAAGGTTTATGCTGATAGAATCGGTAAGGATGTTAGCATTGAAAATCTACACCAAGGCTTCACTCACGTCTTTGAATCCACCTTTGAGAGTACAGAGGGCATAGCAGAGTACATATCTCATCCAGCGCATGTGGAATATGCAAACTTGTTCCTTGCTTCCTTGGACAAAGTTATCGTTATCGACTACAAACCGACCATATTTCACAGCTAA 606 41.75 MDESKSVVKHILLAKFKDEITEEQIDQLIKGYANLVNLIEPMKAFQWSRFKILEAQGSKLDESLHLDIERLLEKRIMPEMLVYFNNKGHSPQEDDIKHFKGHLGRSRLRLLYPRTISVVIITLRLLVGEAEYKVYADRIGKDVSIENLHQGFTHVFESTFESTEGIAEYISHPAHVEYANLFLASLDKVIVIDYKPTIFHS 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36781972 36786513 + Maker00031747 Lcy11g1320 647221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1320 201 ProSiteProfiles Stress-response A/B barrel domain profile. 8 194 IPR013097 -
Lcy11g1320 201 SUPERFAMILY Dimeric alpha+beta barrel 137 197 IPR011008 -
Lcy11g1320 201 SMART Dabb_2 8 86 IPR013097 -
Lcy11g1320 201 SMART Dabb_2 118 196 IPR013097 -
Lcy11g1320 201 PANTHER - 5 198 IPR044662 GO:0009865(PANTHER)
Lcy11g1320 201 Pfam Stress responsive A/B Barrel Domain 123 195 IPR013097 -
Lcy11g1320 201 Pfam Stress responsive A/B Barrel Domain 8 55 IPR013097 -
Lcy11g1320 201 SUPERFAMILY Dimeric alpha+beta barrel 6 49 IPR011008 -
Lcy11g1320 201 Gene3D - 1 200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1320 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g23 . . . . . . . . . . . Cma14g01573 . Car14g01386 Sed02g1121 . Cpe03g01314 Bhi01g01109 Tan10g1095 Cmetu06g2217 . Hepe05g1358 . Lcy11g1320 . . . . . . . . . . . . . . . . Blo07g00129 Bda11g00490 . . . . Bma06g01454 . . Cmo14g01606 . . . . . . . . . . . . . Cla05g00724 Cam05g0794 Cec05g0799 Cco05g0797 Clacu05g0783 . Cre05g0823 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003452 1 2 1 1 1 3 1 2 3 1 3 3 1 1 1 1 2 0 1 2 1 1 1 1 1 2 1 2 1 5 47