Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1329 ATGGAGAAGAAATTTGAAGACTCATTGATGGGTTCTGAAAATTCCGCCGGATTTTACTCTCCGGCCCTGTTCTCCGACGACTTTCCGGCCACTGGGTTTGGTTTTTCCGGTATGTTCGACATGCCATGTGACGATGATCATAAAGCTTCTTGTTCTTCGAATTCCTTTGGAATTGGAATCCACGATCTTTATAATCCTTCTTCTTTGTTCGATTTGCTTTCCACGGCGGCGCCGCCGCTGCAGCAGCCGCTTTCCTCGCCGGCCTCCACCGTGCCCGAGTCGTCCGAGGTGCTCAATGCTCCGGCCACGCCGAATTCTTCGTCGGTTTCGAATTCCTCCTCCAATGAAGCTGCGGCCATTGAAGAGGTCGACAAGAACAACAACACTGACAAGACTTCTAAAGTGTTGAAGCCAAAGAAGAAGAACCAGAAGAAGCAAAGAGAACCCAGATTTGCTTTCATGACAAAGAGTGATATCGATCATCTCGACGACGGTTACCGGTGGCGAAAGTACGGCCAAAAGGCCGTGAAGAACAGTCCTTATCCCAGAAGCTATTATCGTTGCACTACGGCAGGGTGTGGAGTGAAGAAGAGGGTGGAGCGGTCATCCGGCGACCATTCGATCGTCATCACAACGTACGAAGGTCAACACACCCACCAAAGTCCGGTGATGCCCCGAGGAAGCATCCGAGTCCTACCGGAATCCACCAACTGCCTCGTCGCTAATCACGACGCCGCCACCCCCGGTCTTCTATTCCAACACAACACTCCCCAGCCCTTCATGTACAGCCCTCCGCCGCCATTTCTAACGATCGACTCGTCGTCGGTGAGTCCCCATCCTCCGTCGTCCCTCCCACCGCGGTCGTCTCGAGATTCGTTGCTTCGAGACCATGGGCTTCTGCAGGACTTGGTGCCATTGCAAATGAGGAAGGAACCAAAAGATGAGCAAAATGGATGA 957 52.66 MEKKFEDSLMGSENSAGFYSPALFSDDFPATGFGFSGMFDMPCDDDHKASCSSNSFGIGIHDLYNPSSLFDLLSTAAPPLQQPLSSPASTVPESSEVLNAPATPNSSSVSNSSSNEAAAIEEVDKNNNTDKTSKVLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSGDHSIVITTYEGQHTHQSPVMPRGSIRVLPESTNCLVANHDAATPGLLFQHNTPQPFMYSPPPPFLTIDSSSVSPHPPSSLPPRSSRDSLLRDHGLLQDLVPLQMRKEPKDEQNG 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36917052 36918975 - Maker00031450 Lcy11g1329 647230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1329 318 SUPERFAMILY WRKY DNA-binding domain 154 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g1329 318 FunFam WRKY transcription factor 57 148 222 - -
Lcy11g1329 318 MobiDBLite consensus disorder prediction 81 122 - -
Lcy11g1329 318 MobiDBLite consensus disorder prediction 271 293 - -
Lcy11g1329 318 Gene3D WRKY domain 146 223 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g1329 318 SMART WRKY_cls 162 221 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g1329 318 Pfam WRKY DNA -binding domain 163 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g1329 318 ProSiteProfiles WRKY domain profile. 157 222 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g1329 318 MobiDBLite consensus disorder prediction 81 151 - -
Lcy11g1329 318 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 101 228 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1329 Lcy-Chr11:36917052 Lcy3g1824 Lcy-Chr3:45430483 2.58E-47 dispersed
Lcy11g1329 Lcy-Chr11:36917052 Lcy12g0862 Lcy-Chr12:11979788 8.56E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19121 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1329 - - - 0.0