Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1329 | ATGGAGAAGAAATTTGAAGACTCATTGATGGGTTCTGAAAATTCCGCCGGATTTTACTCTCCGGCCCTGTTCTCCGACGACTTTCCGGCCACTGGGTTTGGTTTTTCCGGTATGTTCGACATGCCATGTGACGATGATCATAAAGCTTCTTGTTCTTCGAATTCCTTTGGAATTGGAATCCACGATCTTTATAATCCTTCTTCTTTGTTCGATTTGCTTTCCACGGCGGCGCCGCCGCTGCAGCAGCCGCTTTCCTCGCCGGCCTCCACCGTGCCCGAGTCGTCCGAGGTGCTCAATGCTCCGGCCACGCCGAATTCTTCGTCGGTTTCGAATTCCTCCTCCAATGAAGCTGCGGCCATTGAAGAGGTCGACAAGAACAACAACACTGACAAGACTTCTAAAGTGTTGAAGCCAAAGAAGAAGAACCAGAAGAAGCAAAGAGAACCCAGATTTGCTTTCATGACAAAGAGTGATATCGATCATCTCGACGACGGTTACCGGTGGCGAAAGTACGGCCAAAAGGCCGTGAAGAACAGTCCTTATCCCAGAAGCTATTATCGTTGCACTACGGCAGGGTGTGGAGTGAAGAAGAGGGTGGAGCGGTCATCCGGCGACCATTCGATCGTCATCACAACGTACGAAGGTCAACACACCCACCAAAGTCCGGTGATGCCCCGAGGAAGCATCCGAGTCCTACCGGAATCCACCAACTGCCTCGTCGCTAATCACGACGCCGCCACCCCCGGTCTTCTATTCCAACACAACACTCCCCAGCCCTTCATGTACAGCCCTCCGCCGCCATTTCTAACGATCGACTCGTCGTCGGTGAGTCCCCATCCTCCGTCGTCCCTCCCACCGCGGTCGTCTCGAGATTCGTTGCTTCGAGACCATGGGCTTCTGCAGGACTTGGTGCCATTGCAAATGAGGAAGGAACCAAAAGATGAGCAAAATGGATGA | 957 | 52.66 | MEKKFEDSLMGSENSAGFYSPALFSDDFPATGFGFSGMFDMPCDDDHKASCSSNSFGIGIHDLYNPSSLFDLLSTAAPPLQQPLSSPASTVPESSEVLNAPATPNSSSVSNSSSNEAAAIEEVDKNNNTDKTSKVLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSGDHSIVITTYEGQHTHQSPVMPRGSIRVLPESTNCLVANHDAATPGLLFQHNTPQPFMYSPPPPFLTIDSSSVSPHPPSSLPPRSSRDSLLRDHGLLQDLVPLQMRKEPKDEQNG | 318 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 36917052 | 36918975 | - | Maker00031450 | Lcy11g1329 | 647230 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1329 | 318 | SUPERFAMILY | WRKY DNA-binding domain | 154 | 222 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g1329 | 318 | FunFam | WRKY transcription factor 57 | 148 | 222 | - | - | |
Lcy11g1329 | 318 | MobiDBLite | consensus disorder prediction | 81 | 122 | - | - | |
Lcy11g1329 | 318 | MobiDBLite | consensus disorder prediction | 271 | 293 | - | - | |
Lcy11g1329 | 318 | Gene3D | WRKY domain | 146 | 223 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g1329 | 318 | SMART | WRKY_cls | 162 | 221 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g1329 | 318 | Pfam | WRKY DNA -binding domain | 163 | 220 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g1329 | 318 | ProSiteProfiles | WRKY domain profile. | 157 | 222 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g1329 | 318 | MobiDBLite | consensus disorder prediction | 81 | 151 | - | - | |
Lcy11g1329 | 318 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 101 | 228 | IPR044810 | GO:0003700(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1329 | Lcy-Chr11:36917052 | Lcy3g1824 | Lcy-Chr3:45430483 | 2.58E-47 | dispersed | |
Lcy11g1329 | Lcy-Chr11:36917052 | Lcy12g0862 | Lcy-Chr12:11979788 | 8.56E-72 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19121 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1329 | - | - | - | 0.0 |