Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1338 ATGCAAGTGTTCTCATCTTCTCCTTCAACCGCAAGATTCAATCTCTTCACTTCGTCTCAAAATCCAAACAATCTCTCGAAGTACAGATGCAAAATCTCCATTGTACCCCTCCATTCCGCTCCGAATTCCCTCTCCATTTGCTGTTCTTCGAGGGAGTCCTCGACGGCGGTTCTCGTCGACGATCGGTCTTCGGAAGGCGCGGACGGAGAGGCGTCGGAGGAGGTTCTTAGGGTTCGGCGGCCGGTTATGGAGTTTTCCGGCGACGGCGAGGATGAGGAGGCGGAAGGTGAGATGAGATCTTCGATGATAGATGTAGGGCTAACGGAGATCGCGAAGAAGATGCCGATTTTTGAACCGGAGAATCGGGTGGATTCGAGTGCCCTAGAAAGGCCGCTGATTATCAATTTGGATTTGGCGTTGTATAGAGCGAAGATGTTGGCGAGGAATTTTCAGTATGATGAAGCACAGCAAGTTCTTCAAAAGTGTATAGATAAATGGCCGGAGGATGGGCGGGCATACGTAGCATTGGGGAAGATGTTGAGCAAGCAAATGAAAGCAGCTGATGCCAGAGCTGTGTATGAGAGAGGCTGCCAAGCCACCCAAGGAGAAAACTCCTACATTTGGCAGTGCTGGGCTGTTCTGGAGAGCAGGATGGGGAACATCAGGAAGGCAAGAGAGCTCTTCGATGCAGCCACAGTAGCCAACAAGAAGCACATTGCTGCATGGCATGGCTGGGCTGTGCTAGAGCTAAAGCAGGGAAACATCAAGAAGGCCAGAAATTTACTAGCTAAAGGCCTCAAATACTGTGGTGGAAATGAGTATATCTACCAGACACTTGCACTGCTCGAAGCCAAATCAAATCGGTACGAGCAGGCTCGTTATTTGTTTAAGCAGGCTACCAAGTGCAACCCCAAGAGCTGTGCTAGTTGGCTTGCATGGGCACAGCTGGAGATGCAGCAGGAGAGCAACCTTCTTGCTAGGGAACTATTTGAGAAAGCCATCCAGGCCAGCCCCAAGAACAGATTTGCGTGGCATATATGGGGACTCTTTGAAGCTAATATGGGAAATATCGAGAAGGGAAGGAAACTTTTAAAGATAGGCCATGTCCTAAATCCAAGAGACCCTGTTCTTCTTCAGTCTCTTGGTTTATTGGAGTATAAGAACTCTTCTGCAAGCCTTGCTCGAGTTTTGTTTAGGAGAGCATCTGAACTGGATCCAAAGCACCAACCTGTGTGGATTGCATGGGGATGGATGGAATGGAAAGAAGGAAACATAGCGAAAGCAAGGGAGCTGTATCAACGAGCATTGTTGATTGACTCGGCTAGCGAAAGTGCAGCTCGATGCCTTCAGGCTTGGGGTGTTCTGGAACAGAGAGTAGGCAATCTATCAGCAGCGAGAAGATTATATAGATCCTCTCTGAACATAAATTCTCAGAGTTACGTAACATGGATGACATGGGCAGCATTGGAAGAGGATCAAGGGAATGCAATCCGAGCCGAGGAAATTCGAAATCTCTATTTCCAGCAGAGAACTGAAGTTGTGGATGATGCTTCATGGGTTATGGGATTTTTAGACGTTATTGACCCAGCACTGGACAGCATAAAGAGACTGTTGAAGCTGGAGCAAGATCCATTCACCATGTCGAGAGCAGCAGATGGAGGCACTCGAAACACTTCTGTAGAGGACTCAGCTGCCTCCTCTTCTGGTAACAATGTGGTTGATAGTGAAACTGGGTTTGATTTGGATGCCTTTATTATGAAAAAGCTGTCTATAGACACATCAAAACTCGAAGTTCAGCTTGAAACAACTCGGCCCAAGAGATTCAAGTATCAAAGAAGGCAATTGAAATCAGAAAACAGACAAGAAATGATTGTTTCACAGAGCCAAAGAACGGCATCTTCGTCGGTTTAA 1911 47.36 MQVFSSSPSTARFNLFTSSQNPNNLSKYRCKISIVPLHSAPNSLSICCSSRESSTAVLVDDRSSEGADGEASEEVLRVRRPVMEFSGDGEDEEAEGEMRSSMIDVGLTEIAKKMPIFEPENRVDSSALERPLIINLDLALYRAKMLARNFQYDEAQQVLQKCIDKWPEDGRAYVALGKMLSKQMKAADARAVYERGCQATQGENSYIWQCWAVLESRMGNIRKARELFDAATVANKKHIAAWHGWAVLELKQGNIKKARNLLAKGLKYCGGNEYIYQTLALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQQESNLLARELFEKAIQASPKNRFAWHIWGLFEANMGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASLARVLFRRASELDPKHQPVWIAWGWMEWKEGNIAKARELYQRALLIDSASESAARCLQAWGVLEQRVGNLSAARRLYRSSLNINSQSYVTWMTWAALEEDQGNAIRAEEIRNLYFQQRTEVVDDASWVMGFLDVIDPALDSIKRLLKLEQDPFTMSRAADGGTRNTSVEDSAASSSGNNVVDSETGFDLDAFIMKKLSIDTSKLEVQLETTRPKRFKYQRRQLKSENRQEMIVSQSQRTASSSV 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37049960 37062749 + Maker00031778 Lcy11g1338 647239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1338 636 FunFam High chlorophyll fluorescent 107 127 336 - -
Lcy11g1338 636 Pfam Tetratricopeptide repeat 279 340 - -
Lcy11g1338 636 Pfam Tetratricopeptide repeat 151 202 - -
Lcy11g1338 636 SMART hat_new_1 219 251 IPR003107 GO:0006396(InterPro)
Lcy11g1338 636 SMART hat_new_1 460 492 IPR003107 GO:0006396(InterPro)
Lcy11g1338 636 SMART hat_new_1 355 387 IPR003107 GO:0006396(InterPro)
Lcy11g1338 636 SMART hat_new_1 389 421 IPR003107 GO:0006396(InterPro)
Lcy11g1338 636 SMART hat_new_1 184 217 IPR003107 GO:0006396(InterPro)
Lcy11g1338 636 SMART hat_new_1 253 285 IPR003107 GO:0006396(InterPro)
Lcy11g1338 636 SMART hat_new_1 321 353 IPR003107 GO:0006396(InterPro)
Lcy11g1338 636 SMART hat_new_1 423 458 IPR003107 GO:0006396(InterPro)
Lcy11g1338 636 SMART hat_new_1 150 182 IPR003107 GO:0006396(InterPro)
Lcy11g1338 636 SMART hat_new_1 287 319 IPR003107 GO:0006396(InterPro)
Lcy11g1338 636 SUPERFAMILY TPR-like 151 385 IPR011990 GO:0005515(InterPro)
Lcy11g1338 636 Gene3D Tetratricopeptide repeat domain 206 509 IPR011990 GO:0005515(InterPro)
Lcy11g1338 636 SMART tpr_5 205 238 IPR019734 GO:0005515(InterPro)
Lcy11g1338 636 SMART tpr_5 239 272 IPR019734 GO:0005515(InterPro)
Lcy11g1338 636 SMART tpr_5 409 442 IPR019734 GO:0005515(InterPro)
Lcy11g1338 636 SMART tpr_5 170 203 IPR019734 GO:0005515(InterPro)
Lcy11g1338 636 SMART tpr_5 307 340 IPR019734 GO:0005515(InterPro)
Lcy11g1338 636 SMART tpr_5 136 169 IPR019734 GO:0005515(InterPro)
Lcy11g1338 636 SMART tpr_5 375 408 IPR019734 GO:0005515(InterPro)
Lcy11g1338 636 SMART tpr_5 446 479 IPR019734 GO:0005515(InterPro)
Lcy11g1338 636 SMART tpr_5 273 306 IPR019734 GO:0005515(InterPro)
Lcy11g1338 636 SUPERFAMILY TPR-like 326 513 IPR011990 GO:0005515(InterPro)
Lcy11g1338 636 MobiDBLite consensus disorder prediction 548 572 - -
Lcy11g1338 636 ProSiteProfiles TPR repeat profile. 273 306 IPR019734 GO:0005515(InterPro)
Lcy11g1338 636 MobiDBLite consensus disorder prediction 551 572 - -
Lcy11g1338 636 Gene3D Tetratricopeptide repeat domain 135 205 IPR011990 GO:0005515(InterPro)
Lcy11g1338 636 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 6 620 IPR044624 GO:0003727(PANTHER)|GO:0003729(InterPro)|GO:0006397(PANTHER)|GO:0006397(InterPro)|GO:0006417(PANTHER)|GO:0009507(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1338 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g70 . . . . . . . . . . Cma06g01562 . Car06g01327 . Sed02g1137 Cpe08g00151 . Bhi01g01088 Tan10g1075 Cmetu06g0442 . Hepe05g1383 . Lcy11g1338 . . . . . . . . . Cone7ag0100 . Lsi05g01595 . . Cme06g00788 . Blo07g00145 Bda11g00502 . . Bpe13g00695 . . . Cmo06g01559 . . . . . . . . . . . . . . Cla05g00705 Cam05g0772 Cec05g0780 Cco05g0773 Clacu05g0762 Cmu05g0728 Cre05g0802 . Csa03g01517 Chy06g00754 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011618 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 30