Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1346 ATGAAAAACTCTAGCCTCATAAATTGCTTTGAGGTGGCCATCAAAGTGAAAGGACACTATGAGCTTATCACTAGTGGAAGTAGGAAGGTTCCAAGTGGACCCGATGATGTTGACTCGAATTGGGTAGACGTCTGGAGAGTGGGAAAGGGTGTCAGTTGCCTGATGGTTGACGTGTATGGTGCAAAGTGCAAACCAAAAGTTGGGTATGAGTTCTTAGCAGTCTGGAAGAAGTCCGAATTATCTCCAAGAAAACTTGATCTTTCAGATCATTGCTTAAATCTAAATGTCTCTAAGACAACCTTAATTGGGTCAGAATCGAACAGTGTTAGTTGGTCTCTGGAAGGGTTGGACGTGTACTCGGCTTGGTGCTTCATTGCTAGATTGTTGGGCATTTCCTTCTACCTTCCTAAAAGAGTTGACGAATGGCTCTTCGAAGGTCTTATCGCTTGGAATTTGAAGAAGAAGGCGAAGGGTGGTCTTGTGGTTGGCTCTCTTTGTCCAAGAAATGAATCCCTACTTATGAAATGGCTTTTGAGGTTTTACTCAAGAGGAGAATGCGTTATGCATCTCTATCAAAGAGAGTTGGGGAATTCGATCAGCCTCGTCCAATTCCTAAATGCATTGGTGGTGGGTAATCAAGATAGAATTATGTGGAAGATTGATCCTTTCGGTTCCTTCACGGCTAAGTCTACTTTTTTGAAGTTGACCAATGGGGCAATGAGACTGAACTATCCCATGGTGTGTCGAATCTGGAAGTTCAAGATTCCTAAAAAGGTTTTTCTGCAGAAAAGGAAAGGTCTTTTGGAGATGTGCTTACTTGCTCCCTCCTCTGAGGCTTGTGGAAGGAAAGTAATAGCTGGGTTTTCGAAGATAAGTGTACTTCTTTTGTGTCCTTTTGGCTTTTGGTATGTTATAACTGGCTCAGATGATCGCCTTGTAAAGATTTGGTCAATGGAAACTGCATATTGCTTGGCAAGCTGCCGAGGACATGAGGGTGATATCACTGACCTGGCTGTAAGTTCTAACAATGCTGTGGTGGCATCGTCTTCAAATGATTTTGTTATCCGTGTTTGGCGTTTGCCTGATGGGCTACCAATTTCAGTCTTACGAGGACATACTGGTGCTGTTACTGCAATTGCCTTTAGTCCCAGAGCTGCATATCAGCTTCTTTCATCGTCAGATGATGGAACATGTAGGATATGGGATGCTCGGAGCTCTTCTCAGAATGCTCCTCGAATTTATGTTCCGAGGCCTTTGGACTCTGTGACTGCAAGAAATGGTGGCTCTTCCGTGAGTACTCTTCCTCAGAGCCATCAAATATTTTGCTGTGCTTTTAATGCTTGTGGAACTATTTTTGTTACTGGTAGTTCTGACACTCTAGCAAGGGTTTGGAGTGCTTGTAAAGGAAACAATGATAACCCAGACCAACCAAATCATGAGATTGATGTGTTAGCTGGCCACGAGAATGATGTCAATTATGTGCAATTCAGTGGATGTGCAGTAGCATCAAGATTTACAACAACTGACATTGCAAAGGAAGACAATGTTCACAAGTTTAAAAACTCCTGGTTCACTTATGACAATATAGTTACTTGTTCTCGTGATGGCAGTGCAATTATTTGGGTTCCAAGATCACGGAGGTCACATGGGAAGGTTGGTCGCTGGACCCGTGCATACCATTTAAAAGTGCCACCTCCACCCATGCCTCCACAACCTGCCCGAGGCGGACCTCGTCAGAGGATTCTTCCTACCCCTCGTGGTGTAAATATGATAATTTGGAGCCTAGATAATCATTGTAGAATTTGTGTTTGGAATGCTTCCGATGGCAGCTTAGTGCACTCTTTGACAGGTCATACTGAATCTAAGATTGAGACTAATAAGGAGGAACTATCGGAGGAGGTGCTCTTGCATCCTCCCTTCAGGGAGAGAGGCAAGACGTATGTACTCGATGTTCATCCTTTCAATCCAAGGATTGCTATGAGTGCTGGATACGATGGAAAAACAATAGTTTGGGATATTTGGGAAGGCACGCCAATTCGGATATATGAAATTTCTCATTTCAAACTGGTGGATGGGAAGTTTTCATCAGACGGGACATCAATTATACTTTCAGATGATGTTGGACAGTTATACATATTAAGCACAGGGCAAGGAGAATCCCAACAGGATGCCAAGTATGATCAGTTCTTTCTTGGTGACTATCGCCCGCTTATTCAGGATCCTTCCGGCAATGTAGTTGACCAGGCAGAGATTGGATCATATTCTTTGGAGGAAACCCAACTCAGTACCTACAGACGGAATTTGCAAGATCTCCTTTCTGACTCAGGCATGATACCTTATCCAGAACCTTATCAGACTGCATACCAGCAAAGACGTTTAGGTGCTATGGGACTTGAGTGGCGTCCCTCTTCTCTAAAACTTTCTATTGGGCCTGACTTCAATCTCGACCCAGATTACCAGTTGCTGCCTTTGGCAGACTTGGACATGTTGATTGAACCATTGCCTGAGATTGTAGATGCAATGGATTGGGGACCAGAAAATGAAGTACAAAGCGACGATAATGATTCAGAATACAACGTCACTGAAGATTATTCTACTGGTGGGGAGCAGAGAAGTCTAAATTCTAACTGCTCAACTGATCCAGAATGCAGTTCTGAGGACACAGGGATTGATGATGCTCCTGCTGATCGTCTTCGAAGATCAAAAAGGAAAAAACAGAAAGCAGACATGGAGGTCATGACTTCTTCCGGAAGGCGTGTTAAAAGACGGAATATGGACGAGTATGAAGGTGATACTGTTAGGAGTTCCAGAAGTCGGAAGTCAAAATCTGGCCATAAGCCTCCCAAAAAGAAATCAGCATCTAAGTCGTTAAGACCTCAAAGAGCTGCAGCACGTAATGCCCGTAATTGGATATCATCATTTAAGGGCAAATCTACAGATGGAGAAGATGAATATGAGTCAGGAGGTGATTGCTCAGAAAGTGAATCCACATTACAAGATTCAGACATAGAGAGCGATGAATATGAAAGGTCATTGCAAAACAGAAATAAGCATTCAAAAGGGAAAGAAGTATACCTAGATGAAACCGAGGAGATTACAAGATCTCTTGATGTTCCTGAATCTCGTGTTGATGCTGGAAGCAGAAAGAAGTTGATCCTTAAGTTCTCCCTTAAGAATCCAAATAAGATTGATCCTCCTTCAAACACAACACTTACTTGTTCCAACATGGCTGATGTGGCTAGCTCATCATCAAGATCACCAAAGGAAGTTATTGAAACCAGTCAGAATCTTATGAGGTCAGAGAGGCAATTTGGAAATACTGACGGACATTCTGATCTGACTGAGGTCTACACAAATGGGAACATAAGATGGGGAGGGTCCAGGATTCGTTCGTCCAAGCGCATGAGATTTGGAGATACTATGCCTTCTGATGCATATGCAATGTCTAGTTCATTTCCCGATGGTGATCACAATGAAAATGAAAATACTGTTCATGAATATTTAGAAAGAGAAAATCATTTTGGTGCACAATCCCCCCATTCAAAGATACAGGATTGTGCAGATGATATTGACGCAGTATCCCCCACAGATTTGAAAGACGAGGATGATAATGTTTCTGGGCCTTCCCAGGAGGTGGTCAATGTTGGAGAGCTTAAATGTGTTAGCAACAGCAAGTCATATGATCATGATGATTCAAATCATTTGAATTTCATGCTTCCTTCAGATGCAACCACATCGTCAATACAAAATGGGACTCCTGCTCCTGAGCAACCGGAAAATATTGCACCAATGCGTACAAAGATAAGGTTTAAGAGCATTTCTTTGGATCCTGAACATTCTTTGAAGCACAAAATAGAATCCTTAGATGAAAGCTTGAAGAATGATGAATACAATACAGTATCCGGAAGCCCTCGGCATCTAAATGGGCTGCAAGATAATGTCATGAATGGAACTTATTCTGATCATAGAAATGATTCCCCACCAGATATGGACATTGCGATCAATGAAAAACCAGTGTCAACCTTATGCAACTCATCAGATTTGCAAGCAGTAGAGACAAACAAAATGTACACTGCTGTTTATAGAAGATCTAAGTCAAACAAAGGGAAGAGTAATATCGAAAGCAACGGTTGTGGCTCAGGAGAAAATGCTTTGGGCAACATTAGTCCACCTGCTGAAGCAGACAATCACAAAAGTATGCTTCGTAAGACACGATCCTTGAGGTTTAAGGATTCCTCATATGATCTGAATAATGTGGGTGATGATCTAAAATCAGACGATGATCAAGAACCTGAACAGAAATCAAGACGTTCTGGAAATTCTTCTGCTAACAGATCACATATACCTAGTGAAGAGTGGGGATCGAGCTCAAGGATGACAGTTGGATCCAGATCCACTCGAAATAGAAGGGGTAGTTTTACTCAAGACATAAATCCAGTAGACAGAAGAAAGTCGGTTCAATATGCCAGAAAAGGATCGTGGTTAATGATGCCTGCACATGAGGGTGGCTCCAGATATATTCCCCAACTTGGGGATGAAGTTGCGTATCTGAGACAGGGCCATCAGGAATACATAGATCACTGTTGTGCAAATTACTGTCACACAAAAGACATGGGACCTTGGTCCTTAATCCGAGGAACCATACAAGCTGTTGAGTTCTGTAAGGTTGTGGAGCTTGTTTATTCAACTTCTGCAGGTTCTGGAGATAGTTGCTGTAAAATGTTACTCAAGTTCATAGATCCTACATCCCATGTATACCTCCAATCTTTCAAGTTAACTCTGCCCGAGTTGACTAGTTTCCCTGACTTCTTAGTTGAAAGAACTCGGTTTGAAGCAGCAATGCAGAGGAATTGGACATTCAGGGATAAGTGCAAGGTGTGGTGGAAAAATGACGTTGGAGTAGATGGTAGTTGGTGGGATGGTCGGATTGTCTCTGTGCAGGCAAAATCTTCAGAGTTTCCAGAAAGTCCTTGGGAGAGGTACACAATTAAGTATAGAAGTGATCCTGCAGAACCACATCTACATAGTCCTTGGGAGCTTTATGATACTGTTACACAGTGGGAACAGCCTAGAATAGATGATGAAAACAAAACAAAGTTGCTAACTGCCTTCGACAAATTAATGTCGGCCTCTATGCAGGGTCGTTATGGGATTCAAGATTTGATGCTTCTCTCACGGAAGACACAATACAAGAACAGGTTTCCTGTACCATTGTGCCTGGAGATAATCCAGGAAAGATTACAGAATGATTACTACCGAAGCTTGGAAGCTTTGAAGCATGACTTCATGGTAATGCTATCTAATTTCGAGTCGTTCGTGGCAAAGAATGAAGACATGTCGAAGAAAATTAGGCGCTTGTCGGACTGGTTTAATCGCAACATAACACCATTATAG 5394 42.42 MKNSSLINCFEVAIKVKGHYELITSGSRKVPSGPDDVDSNWVDVWRVGKGVSCLMVDVYGAKCKPKVGYEFLAVWKKSELSPRKLDLSDHCLNLNVSKTTLIGSESNSVSWSLEGLDVYSAWCFIARLLGISFYLPKRVDEWLFEGLIAWNLKKKAKGGLVVGSLCPRNESLLMKWLLRFYSRGECVMHLYQRELGNSISLVQFLNALVVGNQDRIMWKIDPFGSFTAKSTFLKLTNGAMRLNYPMVCRIWKFKIPKKVFLQKRKGLLEMCLLAPSSEACGRKVIAGFSKISVLLLCPFGFWYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRAAYQLLSSSDDGTCRIWDARSSSQNAPRIYVPRPLDSVTARNGGSSVSTLPQSHQIFCCAFNACGTIFVTGSSDTLARVWSACKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDIAKEDNVHKFKNSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNHCRICVWNASDGSLVHSLTGHTESKIETNKEELSEEVLLHPPFRERGKTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESQQDAKYDQFFLGDYRPLIQDPSGNVVDQAEIGSYSLEETQLSTYRRNLQDLLSDSGMIPYPEPYQTAYQQRRLGAMGLEWRPSSLKLSIGPDFNLDPDYQLLPLADLDMLIEPLPEIVDAMDWGPENEVQSDDNDSEYNVTEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADRLRRSKRKKQKADMEVMTSSGRRVKRRNMDEYEGDTVRSSRSRKSKSGHKPPKKKSASKSLRPQRAAARNARNWISSFKGKSTDGEDEYESGGDCSESESTLQDSDIESDEYERSLQNRNKHSKGKEVYLDETEEITRSLDVPESRVDAGSRKKLILKFSLKNPNKIDPPSNTTLTCSNMADVASSSSRSPKEVIETSQNLMRSERQFGNTDGHSDLTEVYTNGNIRWGGSRIRSSKRMRFGDTMPSDAYAMSSSFPDGDHNENENTVHEYLERENHFGAQSPHSKIQDCADDIDAVSPTDLKDEDDNVSGPSQEVVNVGELKCVSNSKSYDHDDSNHLNFMLPSDATTSSIQNGTPAPEQPENIAPMRTKIRFKSISLDPEHSLKHKIESLDESLKNDEYNTVSGSPRHLNGLQDNVMNGTYSDHRNDSPPDMDIAINEKPVSTLCNSSDLQAVETNKMYTAVYRRSKSNKGKSNIESNGCGSGENALGNISPPAEADNHKSMLRKTRSLRFKDSSYDLNNVGDDLKSDDDQEPEQKSRRSGNSSANRSHIPSEEWGSSSRMTVGSRSTRNRRGSFTQDINPVDRRKSVQYARKGSWLMMPAHEGGSRYIPQLGDEVAYLRQGHQEYIDHCCANYCHTKDMGPWSLIRGTIQAVEFCKVVELVYSTSAGSGDSCCKMLLKFIDPTSHVYLQSFKLTLPELTSFPDFLVERTRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWWDGRIVSVQAKSSEFPESPWERYTIKYRSDPAEPHLHSPWELYDTVTQWEQPRIDDENKTKLLTAFDKLMSASMQGRYGIQDLMLLSRKTQYKNRFPVPLCLEIIQERLQNDYYRSLEALKHDFMVMLSNFESFVAKNEDMSKKIRRLSDWFNRNITPL 1797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37124370 37143195 + Maker00031486 Lcy11g1346 647247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1346 1797 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 369 405 - -
Lcy11g1346 1797 SMART WD40_4 608 672 IPR001680 GO:0005515(InterPro)
Lcy11g1346 1797 SMART WD40_4 320 359 IPR001680 GO:0005515(InterPro)
Lcy11g1346 1797 SMART WD40_4 477 542 IPR001680 GO:0005515(InterPro)
Lcy11g1346 1797 SMART WD40_4 277 317 IPR001680 GO:0005515(InterPro)
Lcy11g1346 1797 SMART WD40_4 362 402 IPR001680 GO:0005515(InterPro)
Lcy11g1346 1797 SMART WD40_4 427 465 IPR001680 GO:0005515(InterPro)
Lcy11g1346 1797 MobiDBLite consensus disorder prediction 1362 1383 - -
Lcy11g1346 1797 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 326 IPR001680 GO:0005515(InterPro)
Lcy11g1346 1797 CDD Bromo_WDR9_I_like 1673 1795 - -
Lcy11g1346 1797 FunFam Bromodomain and WD repeat-containing protein 629 728 - -
Lcy11g1346 1797 MobiDBLite consensus disorder prediction 1362 1399 - -
Lcy11g1346 1797 Gene3D - 1679 1796 IPR036427 GO:0005515(InterPro)
Lcy11g1346 1797 MobiDBLite consensus disorder prediction 1412 1435 - -
Lcy11g1346 1797 Pfam Bromodomain 1728 1783 IPR001487 GO:0005515(InterPro)
Lcy11g1346 1797 SUPERFAMILY Bromodomain 1729 1794 IPR036427 GO:0005515(InterPro)
Lcy11g1346 1797 ProSiteProfiles Trp-Asp (WD) repeats profile. 369 411 IPR001680 GO:0005515(InterPro)
Lcy11g1346 1797 MobiDBLite consensus disorder prediction 1003 1022 - -
Lcy11g1346 1797 Gene3D - 434 569 IPR015943 GO:0005515(InterPro)
Lcy11g1346 1797 MobiDBLite consensus disorder prediction 845 1022 - -
Lcy11g1346 1797 ProSitePatterns Trp-Asp (WD) repeats signature. 389 403 IPR019775 -
Lcy11g1346 1797 CDD WD40 302 672 - -
Lcy11g1346 1797 Gene3D - 288 433 IPR015943 GO:0005515(InterPro)
Lcy11g1346 1797 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 368 IPR001680 GO:0005515(InterPro)
Lcy11g1346 1797 SMART bromo_6 1693 1797 IPR001487 GO:0005515(InterPro)
Lcy11g1346 1797 MobiDBLite consensus disorder prediction 1412 1482 - -
Lcy11g1346 1797 Pfam WD domain, G-beta repeat 365 402 IPR001680 GO:0005515(InterPro)
Lcy11g1346 1797 Pfam WD domain, G-beta repeat 323 358 IPR001680 GO:0005515(InterPro)
Lcy11g1346 1797 Pfam WD domain, G-beta repeat 430 465 IPR001680 GO:0005515(InterPro)
Lcy11g1346 1797 MobiDBLite consensus disorder prediction 1436 1481 - -
Lcy11g1346 1797 MobiDBLite consensus disorder prediction 890 938 - -
Lcy11g1346 1797 MobiDBLite consensus disorder prediction 939 956 - -
Lcy11g1346 1797 PANTHER WD REPEAT DOMAIN 9 303 1790 IPR052060 GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0007010(PANTHER)|GO:0008360(PANTHER)
Lcy11g1346 1797 Gene3D - 580 753 IPR015943 GO:0005515(InterPro)
Lcy11g1346 1797 FunFam Bromodomain and WD repeat domain-containing protein 430 568 - -
Lcy11g1346 1797 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 327 360 - -
Lcy11g1346 1797 SUPERFAMILY WD40 repeat-like 291 715 IPR036322 GO:0005515(InterPro)
Lcy11g1346 1797 MobiDBLite consensus disorder prediction 860 884 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1346 K11797 - - csv:101214610 2649.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1346 Lcy-Chr11:37124370 Lcy3g2324 Lcy-Chr3:50096259 2.71E-14 dispersed
Lcy11g1346 Lcy-Chr11:37124370 Lcy10g0188 Lcy-Chr10:2660753 5.01E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41