Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1368 ATGGCCATCGCCGATCTCATCCTCCTCCTGATCTTCACCGCCATACCCTTTTCGATTTCTCAGCCAACTGACCAAGCTCCACCGCCGGCCGCCGATTCTTGCAATGGCATCTTCTTGTCCTACAGTTTCAACCAAGGAACGAAGCTTCCCCCGAATCTCACTGATCTGACCCAACAGCCGTACCGATTCGAGTCCACTCTCTCGATTCTCAACAACGGCCTTCAGGAGCTCAAGTCTTGGAGGGTTTTTGTGGGGTTTCAGCACGATGAGTTCTTGGTCTCGGCCTCCGGCGCCGTCCTCGCCGATGGGAATAGCGTTCCTGGAAACGTCGGCAATGGGACCGTCTTTGCTGGGTTTCCGATGACCGACTTGAAGACGGCGATTGAAACTGCCGGAGACTTCACTCAGATGCAGGTCCAAGTCAAATTGCTTGGAACCCAATTTGGGGTTGCCCCTCCGAATAGTCCGATGCCTTCGAATATATCGCTTGCCAATGATGGATACCGCTGCCCCAGGCCAACTCAACAAGGTACCCCCCCTCCTCTAGATTCTAGTGATTTATCCCAAATCTTCTGCAGTTTCTCAGTTGTTGGAAAATTTTACAATCTGGGGAAGAGTGAGATGCACGTCTGTTGCAGACCCGATGATAGCGTTAAAACAAACATCACAACCAGTGAAGAGTTCTTACCTCGCCAAAATGGCGATCTAACGATCATGTATGATGTGACAAGGACCTATGATTCAAGTTATTGGGCACAAGTCACAATTGCTAACCATAATCCTCTTGGTCGTCTTGACTATTGGAAGTTGAGCTGGGATTGGATGAGGGATGAATTTATCTATTCAATGAAAGGGGCTTATCCTTCTGTTGTTGATTCTACTGAATGCATTTTTGGTAGACAAGGCACTTATTATCGGGATTTAGACTTTGCCAATGTATTAAGCTGTGAAAGAAGGCCAACGATTGTTGATTTGCCTTCAACTAAGGCCAATGACTCCACTCTCGGGTTGATCCCTTTCTGTTGTCGAAATGGGACTATTTTGCCTTCGCATATGGACCCGAGCAAGTCGATTTCTGCATTCCAGATGCAGGTTTTTAAAATGCCACCGGATCTCAATAGATCCCAGATTACACCTCCTCAGCATTGGCAGATCAGTGGCATTCTAAACCCCACATATAAATGTGGAGCTCCAGTGAGGGTAAGTCCTAGCGAATTCCCCGACGCAAGTGGTTTACCGTTGAATTCGACTGCAGTGGCTAGCTGGCAGGTTGTTTGTAATATAACACATGTCAAGGATGACACACCGAAGTGCTGCGTTTCGTTTTCAGCTTACTACAATGATTCTGTCATCCCGTGCAGAACGTGTGCTTGTGGATGCTCACATAACTCTGCCCGCACATGTAATGCAACCTCCCCTGCAATGCTTCTCCCACCTGAAGCCCTCCTTGTTCCTTTTGAGAATAGAACTGCCCTGGCTGTTGCTTGGGCTGGTCTTAAACATTTCCCAGTTCCTAACCCGATGCCATGTGCGGATAACTGCGGTGTCAGTATCAATTGGCATTTGTATACTGATTATAGAGACGGATGGAGTGCGAGGATCACGCTCTTCAACTGGGACGAAGTGAATTTTGCAGATTGGTTTGCTGCAGTTGAGATGAACAAAGCAGCACCTGGTTTCCAGGCAATGTACTCATTCAACGCAACCACCTTGGAATTGGATGGTGCCAATAACACGATCTTTATGCAGGGTAAACCTGGACTAAACTATCTCGTGGGCGAAACAGATGGAATCAACCCAGCAAACGATCCGAGGGTACCTGGAAAACAGCAATCCGTGATCTCATTTACAAAGAAGAACATACAAGGTCTTAACATGGCTGCAGGACATGGGTTCCCCACAAAAGTATTCTTCAATGGGGAAGAATGCTTACTTCCAAAAATGTTCCCAGCCAACGACAGCCGAAGGAACTTAGCTTCGTTCATTCCGAGCATCCTAGCGCTACTACTCGTGTTCATGTTTATTCAGCAATAG 2034 47.49 MAIADLILLLIFTAIPFSISQPTDQAPPPAADSCNGIFLSYSFNQGTKLPPNLTDLTQQPYRFESTLSILNNGLQELKSWRVFVGFQHDEFLVSASGAVLADGNSVPGNVGNGTVFAGFPMTDLKTAIETAGDFTQMQVQVKLLGTQFGVAPPNSPMPSNISLANDGYRCPRPTQQGTPPPLDSSDLSQIFCSFSVVGKFYNLGKSEMHVCCRPDDSVKTNITTSEEFLPRQNGDLTIMYDVTRTYDSSYWAQVTIANHNPLGRLDYWKLSWDWMRDEFIYSMKGAYPSVVDSTECIFGRQGTYYRDLDFANVLSCERRPTIVDLPSTKANDSTLGLIPFCCRNGTILPSHMDPSKSISAFQMQVFKMPPDLNRSQITPPQHWQISGILNPTYKCGAPVRVSPSEFPDASGLPLNSTAVASWQVVCNITHVKDDTPKCCVSFSAYYNDSVIPCRTCACGCSHNSARTCNATSPAMLLPPEALLVPFENRTALAVAWAGLKHFPVPNPMPCADNCGVSINWHLYTDYRDGWSARITLFNWDEVNFADWFAAVEMNKAAPGFQAMYSFNATTLELDGANNTIFMQGKPGLNYLVGETDGINPANDPRVPGKQQSVISFTKKNIQGLNMAAGHGFPTKVFFNGEECLLPKMFPANDSRRNLASFIPSILALLLVFMFIQQ 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37407930 37411509 + Maker00031640 Lcy11g1368 647269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1368 677 PANTHER COBRA-LIKE PROTEIN 7 20 675 - -
Lcy11g1368 677 Pfam COBRA-like protein 250 429 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1368 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1368 Lcy-Chr11:37407930 Lcy9g1219 Lcy-Chr9:36599933 2.52E-214 dispersed
Lcy11g1368 Lcy-Chr11:37407930 Lcy6g1379 Lcy-Chr6:20045346 1.91E-277 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g112 Blo01g00059 Blo12g00091 Bda03g01159 Bda08g00305 Bpe04g01104 . Bma04g01143 Bma05g01021 . . Cma06g01550 Cma14g01601 Car06g01315 Car14g01418 Sed02g1150 Cpe08g00164 Cpe03g01343 Bhi01g01058 Tan10g1052 Cmetu06g2109 . . . Lcy11g1368 . . . . . . . . Cone15ag0747 Cone7ag0119 Cone4ag0122 . . . Cme06g00765 . . . . Bpe05g00746 . . . . . Cmo14g01635 . . . . . . . . . . . . . Cla05g00680 Cam05g0747 Cec05g0753 Cco05g0753 Clacu05g0739 Cmu05g0704 Cre05g0778 . Csa03g01498 Chy06g00736 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0499 . 48 454 COBRA Gene Family AT5G60920 79.9 1.2e-211 733.0
Lcy3g0307 . 42 439 COBRA Gene Family AT5G60920 76.4 4.6e-200 694.5
Lcy3g0271 . 31 427 COBRA Gene Family AT5G60920 69.1 1.6e-179 626.3
Lcy2g0498 . 80 479 COBRA Gene Family AT5G60920 67.3 7.2e-177 617.5
Lcy3g0306 . 31 455 COBRA Gene Family AT5G60920 64.1 5.2e-175 611.3
Lcy3g0270 . 42 383 COBRA Gene Family AT5G60920 65.2 7.2e-161 564.3
Lcy5g2474 . 35 398 COBRA Gene Family AT5G60920 62.5 1.9e-145 513.1
Lcy6g0583 . 54 448 COBRA Gene Family AT5G60920 55.3 7.1e-132 468.0
Lcy10g2072 . 3 238 COBRA Gene Family AT5G60920 65.7 2.3e-98 356.7
Lcy10g2071 . 1 160 COBRA Gene Family AT5G60920 74.4 3.6e-75 279.6
Lcy2g0499 . 18 451 COBRA Gene Family AT3G02210 73.7 1.1e-207 719.9
Lcy3g0307 . 12 441 COBRA Gene Family AT3G02210 75.9 2.4e-205 712.2
Lcy2g0498 . 52 478 COBRA Gene Family AT3G02210 66.4 1.3e-179 626.7
Lcy3g0271 . 5 430 COBRA Gene Family AT3G02210 65.0 1.4e-176 616.7
Lcy3g0306 . 5 457 COBRA Gene Family AT3G02210 60.7 2.2e-171 599.4
Lcy3g0270 . 12 394 COBRA Gene Family AT3G02210 63.1 2.4e-165 579.3
Lcy5g2474 . 9 398 COBRA Gene Family AT3G02210 60.0 5.9e-148 521.5
Lcy6g0583 . 24 455 COBRA Gene Family AT3G02210 54.5 4.1e-141 498.8
Lcy10g2072 . 3 239 COBRA Gene Family AT3G02210 61.9 1.6e-92 337.4
Lcy10g2071 . 1 160 COBRA Gene Family AT3G02210 71.9 3.4e-71 266.5
Lcy2g0499 . 18 446 COBRA Gene Family AT3G29810 74.9 3.1e-202 701.8
Lcy3g0307 . 10 439 COBRA Gene Family AT3G29810 72.5 7.5e-196 680.6
Lcy3g0271 . 14 430 COBRA Gene Family AT3G29810 65.9 1.5e-175 613.2
Lcy2g0498 . 63 461 COBRA Gene Family AT3G29810 67.2 1.2e-174 610.1
Lcy3g0306 . 14 457 COBRA Gene Family AT3G29810 61.7 4.1e-170 595.1
Lcy3g0270 . 10 389 COBRA Gene Family AT3G29810 61.2 8.9e-157 550.8
Lcy5g2474 . 22 409 COBRA Gene Family AT3G29810 57.8 4.2e-146 515.4
Lcy6g0583 . 36 455 COBRA Gene Family AT3G29810 54.1 1.7e-139 493.4
Lcy10g2072 . 3 231 COBRA Gene Family AT3G29810 65.2 5.5e-90 328.9
Lcy10g2071 . 1 160 COBRA Gene Family AT3G29810 73.1 2.8e-73 273.5
Lcy2g0498 . 57 388 COBRA Gene Family AT5G15630 83.7 3.2e-178 621.7
Lcy3g0271 . 9 339 COBRA Gene Family AT5G15630 81.9 1.5e-175 612.8
Lcy3g0306 . 9 368 COBRA Gene Family AT5G15630 74.4 7.9e-169 590.5
Lcy2g0499 . 31 361 COBRA Gene Family AT5G15630 73.2 8.2e-150 527.3
Lcy3g0307 . 27 355 COBRA Gene Family AT5G15630 68.1 1.8e-144 509.6
Lcy5g2474 . 22 339 COBRA Gene Family AT5G15630 64.8 4.4e-135 478.4
Lcy3g0270 . 27 308 COBRA Gene Family AT5G15630 68.4 2.1e-121 433.0
Lcy10g2071 . 1 160 COBRA Gene Family AT5G15630 68.1 1.9e-66 250.4
Lcy10g2072 . 3 148 COBRA Gene Family AT5G15630 59.9 3.9e-51 199.5
Lcy3g0307 . 8 218 COBRA Gene Family AT5G60950 58.7 2.8e-65 245.7
Lcy3g0270 . 8 218 COBRA Gene Family AT5G60950 58.7 4.9e-65 245.0
Lcy2g0499 . 18 224 COBRA Gene Family AT5G60950 57.7 1.8e-64 243.0
Lcy3g0271 . 8 207 COBRA Gene Family AT5G60950 54.7 1.5e-58 223.4
Lcy2g0498 . 76 256 COBRA Gene Family AT5G60950 56.9 1.4e-56 216.9
Lcy5g2474 . 31 211 COBRA Gene Family AT5G60950 51.9 1.1e-48 190.7
Lcy10g2071 . 3 160 COBRA Gene Family AT5G60950 57.6 1.2e-47 187.2
Lcy6g0583 . 27 436 COBRA Gene Family AT1G09790 60.5 1.3e-152 537.0
Lcy3g0307 . 14 425 COBRA Gene Family AT1G09790 53.2 5.7e-135 478.4
Lcy2g0499 . 32 432 COBRA Gene Family AT1G09790 53.8 2.4e-133 473.0
Lcy2g0498 . 66 459 COBRA Gene Family AT1G09790 53.4 7.6e-132 468.0
Lcy3g0271 . 3 410 COBRA Gene Family AT1G09790 51.3 8.7e-128 454.5
Lcy10g2072 . 4 240 COBRA Gene Family AT1G09790 51.9 6.2e-73 272.3
Lcy11g1368 . 31 670 COBRA Gene Family AT4G16120 63.8 6.5e-252 867.5
Lcy6g1379 . 63 655 COBRA Gene Family AT4G16120 54.8 1.2e-205 713.8
Lcy9g1219 . 1 461 COBRA Gene Family AT4G16120 54.5 2.2e-159 560.1
Lcy11g1368 . 6 676 COBRA Gene Family AT3G16860 59.3 1.2e-237 820.1
Lcy6g1379 . 56 655 COBRA Gene Family AT3G16860 52.2 3.6e-194 675.6
Lcy9g1219 . 1 461 COBRA Gene Family AT3G16860 52.3 2.5e-147 520.0
Lcy11g1368 . 9 671 COBRA Gene Family AT5G49270 58.6 5.0e-236 814.7
Lcy6g1379 . 53 655 COBRA Gene Family AT5G49270 51.5 9.5e-195 677.6
Lcy9g1219 . 21 451 COBRA Gene Family AT5G49270 54.1 1.6e-149 527.3
Lcy6g1379 . 13 668 COBRA Gene Family AT3G20580 61.2 1.5e-251 866.3
Lcy11g1368 . 27 672 COBRA Gene Family AT3G20580 52.0 6.4e-207 718.0
Lcy9g1219 . 1 471 COBRA Gene Family AT3G20580 64.5 4.8e-194 675.2
Lcy6g1379 . 24 677 COBRA Gene Family AT4G27110 61.3 5.5e-243 837.8
Lcy11g1368 . 24 672 COBRA Gene Family AT4G27110 50.4 8.4e-199 691.0
Lcy9g1219 . 1 474 COBRA Gene Family AT4G27110 62.5 1.8e-185 646.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005453 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40