Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1369 ATGTCTACGGCCAGTTCGAGCTCTGTGAGGAAGCCCAGTGAAGCTGTTTCCGACCAGTTTCCGGCCGGCCTTCGTGTTCTGGTCGTTGATGATGATCCGACCTGTCTTATGATCTTGGAGAAGATGCTTCGTATTTGTCGCTATGAAGTAACAAAATGTAGCCGAGCCGAGGATGCGCTGTCGCTTCTCAGACGGTACAAAAACGGGTTCGATGTCGTTTTGAGCGATGTCCATATGCCTGACATGGATGGATTCAAACTTCTGGAATACATTGGATTGGAAATGGACTTGCCTGTAATTATGATGTCGGTGGATGATGGGAAAAACGTCGTCATGAAGGGAGTGACTCATGGTGCTTGTGACTATTTAATAAAACCTGTTCGAATTGAAGCGCTGAAGAACATATGGCAGCATGTTGTTCGCAAACGGAAGAATGAATGGAAGGACTTGGAGCAATCTGGTGTGGAAGATGTAGATCGGCAGCAAAAAACAAATGAAGATGCAGATTATTCATCCTCTGCTAATGAAGGGAGTTGGAGGAACTCAAAGAGGAGGAAGGATGATGTAGAAGATGCCGAGGAGAGGGATGATTCATCGACTTTGAAGAAACCAAGGGTCGTTTGGTCCGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTTAATCAACTAGGAATTGATAGTATGGATTTTCCTCTCATCTTTTCTTGCATTTCATTATTTCGTATATGTATGAATATGCCTGTAGAGAAAACTGTAAACTTGTGGTGTGCATCAACCGAGAATCTTGTTCTTTTGCAACCCTCACTTTTAATTTCTTACCTTTGTAAAATACAATCAATAATTACAGAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTTCCTGGACTCACTAGAGAAAATGTTGCTAGCCACCTTCAGAAATATCGCTTGTACCTGAGAAGAGTGAGTGGAATGGCACAACACCAGAGTAGTTTAAACAACACATTCATGAGTGCCCAAGATGCATTTGGCCCATCACTGAACGGGCTTGATCTTCAAACTCTCGCTGCTGCCGGCCAACTTCAGCCACAAAGCCTTGCTACACTCCAAGCAGCTGGATTTGGTAGGTCTACAGCAAAATCGGGAATGCCTATGCCCCTTGTTGATCAAAGGAACCACATTTTTAGCTTTGAAAATCCAAAGTTAAGATTTGGTGATGGGCAACAGCCACATTTGAACGGTAGTAAACCATTGAATCTACTTCACGGAATTCCAACAACAATGGAGCCAAAACAACTTGCTAATCTGCAGCATTCTGCACAGTCTCATGGGAACATGACAATGCAAGTCAGTGCCCAAGGAGGCCAAACTAGCTCTCAACTAATGCAGACACCTCAATCACAAGCTAGAGCACAGATCCTAAATGATAGTACCTCAACTAGCGTAACAAGGCTTCCAACGACAATACCGCAGTCAATTTTGCCAAATGGAACTGCCAGTACGGTTTTGGCTAGGAATGATTTTGCCAATAACAGCAGAGGTGGTGGGTACAATCTAGTTTCACCAGCCTCGACGATGTTGAATTTTCCCATGAACCAAACTGCAGAACTGCCTGGTAACAGTTTTCCTCTTCAAAGTACCCCAGGAATGTCAAGTATTGTACCGAAGGGAAGATTCCCAGAGGATGTTAACTCAGACATTAAAGGATCTGAAGGTTTTGTACCAAGCTATGATATGTTTAGGGATCTGCATCCTCAGAAGCCAGATTGGGACTTGCAACATGTAGGCGTGACCTTCGATGCGTCTCAAGGTAGTCTCGACATTCCACCCTCAGCTTTTGCTCATCAAGGGTATGCCTCTAGCCAACAAAATGGACAAAACAGGAACGCATCTACGGCAAGCAAGGCCATGTTCTTGTTGGAAGAAGGAAGCGACAATGGGAATGCACAAAGTATGGGTCAACAACTCAACCCTCTTTTCATTGACGGTTCGGTGCGAGTTAAAGCTGAAAGAGCTTCTGATTGTAGCAGCCAAACTGACCTTTTTTCTGAACACTTTGGTCAGGAGGACCTAATGAGTGCACTTCTTAAGCAGGTGAGATTGCAGTACCTTCTTTGTATTTCCCTCCCCCTCCCCGCCCCGCCCAGCCCGGGCGTTCATAAGATGGAACTCGATTCTTTCGACCGCTTCCACAGAGAGACTAGCTCGAGTCTGCTTGTGGAATCGGCCATTACTGCAGCGCTCTTGACGCATGGAATCGACATTTTTGACGCAATTGCCAGGTTTTAG 2274 45.16 MSTASSSSVRKPSEAVSDQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTKCSRAEDALSLLRRYKNGFDVVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGVEDVDRQQKTNEDADYSSSANEGSWRNSKRRKDDVEDAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDSMDFPLIFSCISLFRICMNMPVEKTVNLWCASTENLVLLQPSLLISYLCKIQSIITEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGMAQHQSSLNNTFMSAQDAFGPSLNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGSKPLNLLHGIPTTMEPKQLANLQHSAQSHGNMTMQVSAQGGQTSSQLMQTPQSQARAQILNDSTSTSVTRLPTTIPQSILPNGTASTVLARNDFANNSRGGGYNLVSPASTMLNFPMNQTAELPGNSFPLQSTPGMSSIVPKGRFPEDVNSDIKGSEGFVPSYDMFRDLHPQKPDWDLQHVGVTFDASQGSLDIPPSAFAHQGYASSQQNGQNRNASTASKAMFLLEEGSDNGNAQSMGQQLNPLFIDGSVRVKAERASDCSSQTDLFSEHFGQEDLMSALLKQVRLQYLLCISLPLPAPPSPGVHKMELDSFDRFHRETSSSLLVESAITAALLTHGIDIFDAIARF 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37414130 37417903 - Maker00031859 Lcy11g1369 647270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1369 757 FunFam Two-component response regulator 24 161 - -
Lcy11g1369 757 SUPERFAMILY Homeodomain-like 282 316 IPR009057 -
Lcy11g1369 757 CDD REC_typeB_ARR-like 26 140 - -
Lcy11g1369 757 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Lcy11g1369 757 Gene3D - 200 318 - -
Lcy11g1369 757 MobiDBLite consensus disorder prediction 151 166 - -
Lcy11g1369 757 MobiDBLite consensus disorder prediction 151 198 - -
Lcy11g1369 757 NCBIfam myb-like DNA-binding domain, SHAQKYF class 283 312 IPR006447 GO:0003677(InterPro)
Lcy11g1369 757 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 408 IPR045279 GO:0009736(InterPro)
Lcy11g1369 757 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Lcy11g1369 757 Gene3D - 24 161 - -
Lcy11g1369 757 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Lcy11g1369 757 MobiDBLite consensus disorder prediction 179 198 - -
Lcy11g1369 757 SUPERFAMILY CheY-like 23 148 IPR011006 -
Lcy11g1369 757 PIRSF RR_ARR_type-B 281 697 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lcy11g1369 757 PIRSF RR_ARR_type-B 2 229 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1369 Lcy-Chr11:37414130 Lcy2g0162 Lcy-Chr2:1259169 3.21E-76 dispersed
Lcy11g1369 Lcy-Chr11:37414130 Lcy12g0777 Lcy-Chr12:10055481 6.44E-247 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19125 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1369 K14491 - csv:101209013 754.977