Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1390 ATGGGAGATGATGGAGGGAAGAACAATAAGGCTGCCCTCATCGGCGTCTCTTCATTGTTTCTTGTTGCCATGGTAGTTGCTGTGGCGGTCGGCGTCAACCGCAAGGGCACCGATGACGACATTGGTGGTGGTGGCGGCGCTACAACAACGGAGATCTCCACCTCCTCTAAAGCGGTTAAAGCTCTTTGTCAGCCCACTGATTACCAACAAACTTGCGAGAAAGCCCTCGCGGAGGCCGGCAAAGACACAAGCGACCCACGCGAACTAATCAAGGCAGGATTTAACGTTGCTGTTGAACAAATCAGATCCGCCATTGGAAATTCCACCCTCTTGAAAGAATCTGCCAAAGATCCCATGGCCAAGAAAGCACTTGACGATTGCGATGAGCTCATGGATTATGCAATCGACGATCTTGTAACTTCGTTCAAAAGGATCACCGATGACTTTGATATCACCAAACTAGATGATTACATCGAGGATCTCAAGATTTGGCTAAGTGGGGCATTGACGTATCAAGAAACTTGTTTGGATGGATTTGAGAATGTTACTGGTGATACACAGGAAAAGATGCAGAAATTGTTGAAGATGTCAAGGGAATTGACAATCAATGGGCTTGGGATGGTGAGTGAGGTCACCTCCATTTTGACCTCTTTTGGGTTTCCGATGCCTGGACGACGATTGCTGACAGAGGAATCTGATGAACAAAGGGAAGAGCCATCATGGGTCAGTGACAGAAGGGGGATACTCCAAGCCACTCCAGCCAACATCAAAGCGGACGTTGTGGTGGCTAAAGATGGAAGTGGCAAGTATAAAACAGTGAGTGAAGCTCTAAAGGATGTCCCAAAGAAGAGCAATAAAACCTTTGTCATTTATATTAAGGCGGGAGTTTATCAAGAGCAAGTGATGGTCGAAAAGAGTATGACTTATGTCATGATGATTGGAGATGGCCCGACTAAGACAAAGATCACTGCGTCAAAGAACTTTATCGACGGAACACCCACATTCAAAACCGCTACTGTTTCGGTGATCGGGACCAACTTCATCGCGAAAAACATAGGATTCGAGAACTCGGCAGGATCAGCGAAGCACCAAGCAGTGGCACTTCGAGTTCAATCTGACATGTCCATCTTCTACAATTGTCAAATGGATGGTTACCAAGACACTCTCTACACTCACGCCCACCGCCAATTCTACCGAGATTGCACCATCACCGGCACCATCGACTTCATCTTTGGCAATGCAGCTGTTGTGTTCCAGAATTGCAAGATCTTAGTGAGGAAGCCAATGGAAAATCAACAATGCATCGTTACTGCCCAAGGCCGAACCCAACGAAAAGAGCCCACTGCCATCATCCTTCAGAATTGCGTCATCTCCTCTGCTCCTGATTTCTTCCCCGTCCGTCACATCAACAAGGCCTACCTTGGACGGCCATGGAAGGAATATTCAAGAACCATCATTATGCAGTCCCAAATCGACGACTTGATTCAGCCTGAAGGATGGCTTCCATGGCAAGGTGATTTTGCTTTGAAAACTCTGTTTTACACAGAGTACAATAACAGGGGACCTGGTGCCGGCAAGGAGAAACGAGTGAAGTGGAGGGGAATTAAGCAAATCACACCAGAGCACGCCGTCGATTTCACCGTTGGGAGATTTATTCGTGGTGATCATTGGATCAAGCCCACCGGAGTGCCATACACTCCGGGCATGATGACAGTGTAA 1719 47.53 MGDDGGKNNKAALIGVSSLFLVAMVVAVAVGVNRKGTDDDIGGGGGATTTEISTSSKAVKALCQPTDYQQTCEKALAEAGKDTSDPRELIKAGFNVAVEQIRSAIGNSTLLKESAKDPMAKKALDDCDELMDYAIDDLVTSFKRITDDFDITKLDDYIEDLKIWLSGALTYQETCLDGFENVTGDTQEKMQKLLKMSRELTINGLGMVSEVTSILTSFGFPMPGRRLLTEESDEQREEPSWVSDRRGILQATPANIKADVVVAKDGSGKYKTVSEALKDVPKKSNKTFVIYIKAGVYQEQVMVEKSMTYVMMIGDGPTKTKITASKNFIDGTPTFKTATVSVIGTNFIAKNIGFENSAGSAKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNAAVVFQNCKILVRKPMENQQCIVTAQGRTQRKEPTAIILQNCVISSAPDFFPVRHINKAYLGRPWKEYSRTIIMQSQIDDLIQPEGWLPWQGDFALKTLFYTEYNNRGPGAGKEKRVKWRGIKQITPEHAVDFTVGRFIRGDHWIKPTGVPYTPGMMTV 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37692817 37694535 + Maker00032068 Lcy11g1390 647291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1390 572 FunFam Pectinesterase 55 212 - -
Lcy11g1390 572 Pfam Pectinesterase 259 555 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy11g1390 572 SMART PMEI_2 54 207 IPR006501 GO:0004857(InterPro)
Lcy11g1390 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 211 IPR035513 -
Lcy11g1390 572 Pfam Plant invertase/pectin methylesterase inhibitor 58 205 IPR006501 GO:0004857(InterPro)
Lcy11g1390 572 FunFam Pectinesterase 253 569 - -
Lcy11g1390 572 Gene3D - 253 569 IPR012334 -
Lcy11g1390 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 211 IPR035513 -
Lcy11g1390 572 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Lcy11g1390 572 PANTHER PECTINESTERASE 10 560 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy11g1390 572 NCBIfam pectinesterase inhibitor domain 54 193 IPR006501 GO:0004857(InterPro)
Lcy11g1390 572 SUPERFAMILY Pectin lyase-like 256 568 IPR011050 -
Lcy11g1390 572 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Lcy11g1390 572 CDD PMEI-like_3 61 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1390 Lcy-Chr11:37692817 Lcy11g1393 Lcy-Chr11:37714394 0 dispersed
Lcy11g1390 Lcy-Chr11:37692817 Lcy11g1391 Lcy-Chr11:37701898 0 tandem
Lcy11g1390 Lcy-Chr11:37692817 Lcy12g0753 Lcy-Chr12:9638380 3.17E-255 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1390 K01051 - csv:101212686 962.214