Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1394 ATGGCAGATGGAGGAAAGAAGAAGAAGGCTGCCCTCATCCGCGTGTCTTCATTGTTTCTTGTTACCATGGTAGTTGCGGTGGCGGTGGCTGACAACCCCAAAGGCGGTGGCGCCACCGCGGAGACCTCCACCTCCACTAAATCTGTTAGAGCTGTTTGTCAGTCCACTGATTACCAAGAAACTTGCGAGAACGCCCTCGCGGAGGCTGGAAAAAACACGAGCGACCCACGTGTACTAATCAAGGCAGGATTCCACGCTGCTGTTGAACAAATCAGAACGGCCATTGGAAATTCCACCCTCTTGAAAGAATCTGCAAAAGATCCCATGGCCAAGCTAGCACTCGAAGATTGCGGTGAACTCATGGATTATGCAATCGACGATCTTGTAACTTCGTTCGACAGGGTCACCGATAATTTCGATTTAAGCAAACTGAATGAATACATCGAGGATCTCAAGATTTGGCTAAGTGGGGCATTAACGTATCAAGAAACTTGTTTGGATGGATTTGAGAATGTTACTGGTGATACAGGGGAAAAGATGCAGAATTTGTTGAAGACGTCAAGAGAATTGACAATCAATGGGCTTGATATGGTGAGTGAGATCTCGTCCGTTTTGACCTCTTTATGGCTTCCGATGGCTGGACGACGACTACTGACAGAGGAGGAATCCAATGAACGACTGCTGACAGAGGACGAGCCATCATGGGTCAACGACAGAAGGGGGCTACTCCGAGCCACTCCAGCCAACATCAAAGCAGACGTTGTGGTGGCTAAAGATGGAAGTGGCAAGTACAAAACAGTGAGTCAAGCTCTAAACGATGTCCCAAAGAAGAGCAATAAAACCTTTGTCATTTATATTAAGGCGGGAGTTTATCAAGAGCAAGTGATGGTCGACAAGACCATGACCTATGTCATGATGATTGGAGATGGCCCGACTAAGACGAAGATCACCGCGTCCAAGAACTTCATCGACGGAACACCCACATTCAAAACCGCTACTGTTTCGGTGATCGGGACCAACTTCATCGCCAAAGACATAGGATTCGAGAACTCCGCGGGAGCAGCGAAGCACCAAGCAGTGGCACTCCGAGTTCAATCTGACATGTCCATCTTCTACAATTGTCAAATGGATGGTTACCAAGACACTCTCTACACTCATGCCCACCGCCAATTCTACCGAGATTGCACCATCACCGGCACCATCGACTTCATCTTTGGCAATGCAGCTGTTGTATTCCAAAACTGTAAGATCTTCGTGAGGAAGCCAATGCAAAATCAACAATGCATCGTTACTGCCCAAGGTCGAACCCAGCGAAAAGAGCCCACTGCCATCGTCCTTCAGAATTGCGCCATCTCCTCCGCTCCTGATTTCTTCCCCGTCCGTCACATCAACAAGGCCTACCTTGGGCGCCCATGGAAGCAATATTCAAGAACCATCATTATGCAGTCCCAAATCGACGACTTGATTCAGCCTGAAGGATGGCTTCCATGGCAAGGTAATTTTGCTCTGAAAACTCTGTTTTACTCCGAGTTCAATAACAGGGGACCTGGTGCCGCCAAGGACAAACGAGTGAAGTGGAGGGGAATCAAGCAAATCACAGCACAGCATGCCGTCGATTTCACCGTCGGGAGGTTTATTAATGGTGATCACTGGATCAAGCCCACCGGAGTGCCATACACTTCTGGCATGATGGCGGTGTAA 1701 48.62 MADGGKKKKAALIRVSSLFLVTMVVAVAVADNPKGGGATAETSTSTKSVRAVCQSTDYQETCENALAEAGKNTSDPRVLIKAGFHAAVEQIRTAIGNSTLLKESAKDPMAKLALEDCGELMDYAIDDLVTSFDRVTDNFDLSKLNEYIEDLKIWLSGALTYQETCLDGFENVTGDTGEKMQNLLKTSRELTINGLDMVSEISSVLTSLWLPMAGRRLLTEEESNERLLTEDEPSWVNDRRGLLRATPANIKADVVVAKDGSGKYKTVSQALNDVPKKSNKTFVIYIKAGVYQEQVMVDKTMTYVMMIGDGPTKTKITASKNFIDGTPTFKTATVSVIGTNFIAKDIGFENSAGAAKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNAAVVFQNCKIFVRKPMQNQQCIVTAQGRTQRKEPTAIVLQNCAISSAPDFFPVRHINKAYLGRPWKQYSRTIIMQSQIDDLIQPEGWLPWQGNFALKTLFYSEFNNRGPGAAKDKRVKWRGIKQITAQHAVDFTVGRFINGDHWIKPTGVPYTSGMMAV 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37726451 37728151 + Maker00031434 Lcy11g1394 647295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1394 566 SMART PMEI_2 44 197 IPR006501 GO:0004857(InterPro)
Lcy11g1394 566 FunFam Pectinesterase 247 563 - -
Lcy11g1394 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 202 IPR035513 -
Lcy11g1394 566 CDD PMEI-like_3 51 203 - -
Lcy11g1394 566 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Lcy11g1394 566 Gene3D - 247 563 IPR012334 -
Lcy11g1394 566 SUPERFAMILY Pectin lyase-like 250 562 IPR011050 -
Lcy11g1394 566 Pfam Plant invertase/pectin methylesterase inhibitor 48 197 IPR006501 GO:0004857(InterPro)
Lcy11g1394 566 ProSitePatterns Pectinesterase signature 1. 278 297 IPR018040 -
Lcy11g1394 566 Pfam Pectinesterase 253 549 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy11g1394 566 PANTHER PECTINESTERASE 9 554 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy11g1394 566 NCBIfam pectinesterase inhibitor domain 20 185 IPR006501 GO:0004857(InterPro)
Lcy11g1394 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 201 IPR035513 -
Lcy11g1394 566 FunFam Pectinesterase 45 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1394 Lcy-Chr11:37726451 Lcy12g0753 Lcy-Chr12:9638380 1.18E-253 dispersed
Lcy11g1394 Lcy-Chr11:37726451 Lcy11g1396 Lcy-Chr11:37737903 0 proximal
Lcy11g1393 Lcy-Chr11:37714394 Lcy11g1394 Lcy-Chr11:37726451 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1394 K01051 - csv:101212686 946.806