Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1418 ATGCTGGGAATTGCTCTTGAGAAACTACCCGAGGAACTAGACGCACAATTGCAATTAGAAATTTGCATTTGTCAACTAGTAACAGCAATGATGCACACTTCAATTTTTAGCCAATTGATTGATATTATACATATTGGTTTCAAAACATTACGGTGCCCCTCCCCAATTCTTCACGGTTTAAAATTATATAGTATGCTTCAAGAAGCTTCAACAAAACCTGAGGGAGAACTTGAAGTTAGCTTTGGTTATAAATGCAATGTTAACATAGATGGCATTCATGGGGTTTCTGACAAGTTCGAGATCCAGCCTGGACTTCGAAGGATCAGCAGTTTCTCTTGCTTATCTGGGGCTGCCTTGAGTGCAAATGCCACCCTAGCAAACACAAATATATGCAATGGTTTGATAGGAGAAGAAATACTTCCGACCTGGGACTCTCCTAACTCCTTCCGTAAGGTTCCCTCATCACCTACTCTTTCAAGGTTGGATATATTGTCAACGTCTCTGCAGAGTAGTCTATCAAACTTAAGTTGCAGTCCATCTACCCCAACATCTGAATACGATTCATACTTGTTGAAATCCATGAGTGCTCCTTCCGGAAATGAAGGTTTTCTTAATGTTAAGGAAGTGCAAGTGGCAGGTGGAGCTGCTGGTGAGGACAGGGTCCAAGCTGTTTGTTCTGAAGAAAATGGATGGTTATATTGTGCAATTTATGACGGCTTTAATGGAAGAGATGCAGCTGATTTTCTTGCTGGCACTTTGTATGAAACGATCGTATTTTATTTTAACCTACTAGATTGGGAAGCTAGGAATGAAACCTCTGAGGGTTCGGACATGGATAATTCACATCTTCTTGAAAATAGTAGCACTACTCCGGGTAGATTTTCTCCTTTGAGAAACAATCGGAAAAATGCTTCAGATATGAACAATACATTCGAGAACCATTCACATAGCAAAGCAGGAATGACAAACTATCCTCTAAGGCATGGGGTGCTTGATAGCCTCCAGCGTGCTCTTAGTCAAACAGAGAATGACTTTCTGCACATGGTTGAACAGGAAATGGAGGATCGTCCTGATTTGGTTTCTGTTGGATCTTGTGTTTTAGTTGTTCTTCTTCATGGAAAGGATTTGTATACGCTAAATTTAGGTGATAGTAGAGCAGTACTAGCTACCCTTGATGAAGATGCTATGAGAGGGAATGGGGGACTGAAAGCCATCCAGCTCACAGAGAGTCACACTGTGGATAATGAACTTGAAAGAGCACAGTTACAACATGATCATCCTGATGATCCCACAATCATTGTTGGTGGAAAAGTCAAAGGAAAACTGAAGGTGACTCGTGCTTTTGGAGTTGGCTACTTGAAGACGCTATGCCTTAACCATGCTTGTTCTTTATACGAATCCACCACCCCAACCGCTACTTTTGATTATTATACATTTATTTCTCTGCAGAAAAAGTTTAATGATGCTTTGATGGGTATTCTTCAAGTTCGTAACCTAATAAGCCCTCCCTATATTTCCACCCAACCGGCATTGTCTGTCCATAGGATTTCAAAATCAGATTGCTTTGTTATAGTTGGCAGTGATGGTTTATTTGACTTTTTTGGCAATGACGAGGCAGTGAGCCTTGTCCATTCATATATCTTGAGCAATCCAACTGGAGATCCTGCAAAATTTTTACTGGAGCAGCTCTTATTGAAAGCAGCTAATTGCGCAGGTTTTAGCAAGGAAGAATTAATTACCATTCCAGCGGGCAGGAGAAGGAAATATCATGATGATGTAACTGTTATTGTAATCATCCTTGGAACAAATCAGCGCACCACAAGGGCATCTACTAGCATGTAA 1842 40.77 MLGIALEKLPEELDAQLQLEICICQLVTAMMHTSIFSQLIDIIHIGFKTLRCPSPILHGLKLYSMLQEASTKPEGELEVSFGYKCNVNIDGIHGVSDKFEIQPGLRRISSFSCLSGAALSANATLANTNICNGLIGEEILPTWDSPNSFRKVPSSPTLSRLDILSTSLQSSLSNLSCSPSTPTSEYDSYLLKSMSAPSGNEGFLNVKEVQVAGGAAGEDRVQAVCSEENGWLYCAIYDGFNGRDAADFLAGTLYETIVFYFNLLDWEARNETSEGSDMDNSHLLENSSTTPGRFSPLRNNRKNASDMNNTFENHSHSKAGMTNYPLRHGVLDSLQRALSQTENDFLHMVEQEMEDRPDLVSVGSCVLVVLLHGKDLYTLNLGDSRAVLATLDEDAMRGNGGLKAIQLTESHTVDNELERAQLQHDHPDDPTIIVGGKVKGKLKVTRAFGVGYLKTLCLNHACSLYESTTPTATFDYYTFISLQKKFNDALMGILQVRNLISPPYISTQPALSVHRISKSDCFVIVGSDGLFDFFGNDEAVSLVHSYILSNPTGDPAKFLLEQLLLKAANCAGFSKEELITIPAGRRRKYHDDVTVIVIILGTNQRTTRASTSM 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38014553 38023410 + Maker00031891 Lcy11g1418 647319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1418 613 Gene3D - 183 609 IPR036457 -
Lcy11g1418 613 MobiDBLite consensus disorder prediction 272 298 - -
Lcy11g1418 613 Pfam Protein phosphatase 2C 334 551 IPR001932 -
Lcy11g1418 613 CDD PP2Cc 216 600 IPR001932 -
Lcy11g1418 613 PANTHER PROTEIN PHOSPHATASE 2C 212 598 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lcy11g1418 613 SUPERFAMILY PP2C-like 217 601 IPR036457 -
Lcy11g1418 613 ProSiteProfiles PPM-type phosphatase domain profile. 203 600 IPR001932 -
Lcy11g1418 613 SMART PP2C_4 194 598 IPR001932 -
Lcy11g1418 613 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1418 Lcy-Chr11:38014553 Lcy6g2205 Lcy-Chr6:46334184 4.87E-59 dispersed
Lcy11g1418 Lcy-Chr11:38014553 Lcy1g1438 Lcy-Chr1:13958390 1.90E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1418 - - - 0.0