Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1419 ATGGCTGTGGTGGGTACTGAAGCAGCCTCACAACCACTTAGAGCACAGGTTTGGGTCTTGAAAGTTTCTATTCACTGTGAAGGATGCAAGAGGAAGGTTAAGAAAGTTCTACAGAGCATTGATGGTGTTTACACTACCACCATTGACTCAGAACAACAGAAAGTTACGGTCACCGGAAACGTCAGTCTTGAGACTCTGACCAAGAGGCTAGCAAGAGCAGGTAAACACGCGGAAATTTGGCCAGAAAAGCCAGCGGGAAAAGAGAAACAGTTCACCAAGCTGTTGGCAACTGACAAAGGGAATGGTCAAGAAAATGGAAGAAGTCCGAGTACTAATAAAGCTTCAGCAAAGAAGGTTGAGTTCAAGGTAAGCCCTGTCAAGAATAACCGTGAAGAACAGATTGAAAAGTCAAAGAATAATGGAAGCTCTCCCAAAAAGCCTCCGGCGGCCAAATCCGAGGGCAATACTACTGGACATGAGGGTTGTTCTCCAGACAAAAGTGTAGGACAAAGTGGTGAAAAGAACAAAAAGAAGGGGCAACCAGGTAATAACAATAGTGATAAATCAGGTTCAAACTCCCAAAATGGACATGGGACACTCAATGTGGATCAAGATGTGGGCCTAAGTAATGGTAACCTACTGGCCCAACAAATATACACGGGCCCAAAGGGTTATTATTTCCCTCAACCTATATTGGGGTTAAATTACAATGCGCCGCATTTAGGGAGAGGTCCTGAATTTCTTTACCATGTGCCACCGATTCCATTTTCATATTCGAATGATCAGACAGGAAATTATGAGGATCAAGCAAAGCCACAGACCTACCTGGATTATTTCAGTGAAGAAAATGCCCATGGTTGCTTCATCATGTGA 873 43.87 MAVVGTEAASQPLRAQVWVLKVSIHCEGCKRKVKKVLQSIDGVYTTTIDSEQQKVTVTGNVSLETLTKRLARAGKHAEIWPEKPAGKEKQFTKLLATDKGNGQENGRSPSTNKASAKKVEFKVSPVKNNREEQIEKSKNNGSSPKKPPAAKSEGNTTGHEGCSPDKSVGQSGEKNKKKGQPGNNNSDKSGSNSQNGHGTLNVDQDVGLSNGNLLAQQIYTGPKGYYFPQPILGLNYNAPHLGRGPEFLYHVPPIPFSYSNDQTGNYEDQAKPQTYLDYFSEENAHGCFIM 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38020372 38021583 - Maker00031753 Lcy11g1419 647320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1419 290 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 16 290 - -
Lcy11g1419 290 MobiDBLite consensus disorder prediction 174 204 - -
Lcy11g1419 290 CDD HMA 19 78 IPR006121 GO:0046872(InterPro)
Lcy11g1419 290 MobiDBLite consensus disorder prediction 97 117 - -
Lcy11g1419 290 FunFam Copper transport protein ATOX1 14 82 - -
Lcy11g1419 290 Pfam Heavy-metal-associated domain 20 76 IPR006121 GO:0046872(InterPro)
Lcy11g1419 290 SUPERFAMILY HMA, heavy metal-associated domain 15 81 IPR036163 GO:0046872(InterPro)
Lcy11g1419 290 ProSiteProfiles Heavy-metal-associated domain profile. 15 78 IPR006121 GO:0046872(InterPro)
Lcy11g1419 290 Gene3D - 15 79 - -
Lcy11g1419 290 MobiDBLite consensus disorder prediction 140 164 - -
Lcy11g1419 290 MobiDBLite consensus disorder prediction 97 204 - -
Lcy11g1419 290 MobiDBLite consensus disorder prediction 123 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1419 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2176 Lcy-Chr10:45690340 Lcy11g1419 Lcy-Chr11:38020372 4.37E-10 dispersed
Lcy11g1419 Lcy-Chr11:38020372 Lcy4g1831 Lcy-Chr4:44376737 2.37E-23 dispersed
Lcy11g1419 Lcy-Chr11:38020372 Lcy11g1507 Lcy-Chr11:38947719 1.77E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g319 . . . . . . . . . . . Cma14g01622 . Car14g01447 . . . Bhi01g01001 . . . Hepe05g1452 . Lcy11g1419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008753 2 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 0 3 34