Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1433 ATGGACCGCTTCCGGACCCGATACACCCCATGGAGGTCACTGCATTCCGACTTCACTCTTGATTTCTGCAGATTTTCCCTCCGATTCGTCGCTTTTACTGCTTTCTGCGCCCTGTTTCTTTCTTTGATTCTGATTTTTCCGATAATGCAGACCCGCTTTGGCCCTTGGGATCCAGGGAACGGGAATCGTACCCCGAACGGCCTGAAGAGGCCGATTGTATATACTATCTACGTACCGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCTCGTGAGCGTGGCGCGGTATTCCTGTCGATCTTTTTCTCTTTCACTGAATTGTTCTAATTTAGGGCTTACTTTTGAGGTTTTGGGAGGTTCCAGACCTGGTGGAAGAGACTATCCCGAACGAGTAGGGCAGCCTGTGTGCCAGTATTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAAAAGGTTCTCTCAGCCCTGTGTCGCTGAATTTCTATGGCTACCCACTACGGCCGGTCTGTGTCTACTTCCTCTTGCATGCTTTATTCGGTGAAAAGGAGTGCTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCTGAACCGGCGGGCTTGCAGTTTCCAGCACCATCACCCGTTCAGGTTACACCAGTGCCAGCTCCAGTCCCTGCACCCTCTGTTTATCCTCCTGTGCAGTCTCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGGTCTCCATTGCTGCCGAGCCCATATGTTCATGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGGGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCGGGGCAACTTTATGGTATGGCACAAGTTTCGCCTTCTGCACCTGCCTATGCAGGATCTTATCAGCCCATGCCTTCTGCTGGTCCGTCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGACAGACCTGGTCAACCAGAGTGCCAATATTACATGAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCATCCGCCAGAATTGGTTACTTCGAGGTCAAGTGTTGTCCTTAGCCAACTAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGTAAGTTTGGCCCTGCATGCAAATTCGACCACTCGATGGAACGACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCGGTAGTCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACAATTTTCAGGTTCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCAAGGACAGAAATGCCTTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGTCCGTCGGTGAGCAGTACCTCCAGCACCACCAGTGTGGAGGGTCGTACTTGA 1599 49.16 MDRFRTRYTPWRSLHSDFTLDFCRFSLRFVAFTAFCALFLSLILIFPIMQTRFGPWDPGNGNRTPNGLKRPIVYTIYVPDFVDMALVVGSIILVSVARYSCRSFSLSLNCSNLGLTFEVLGGSRPGGRDYPERVGQPVCQYYMRTGMCKFGASCKYHHPQQEKGSLSPVSLNFYGYPLRPVCVYFLLHALFGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPVPAPVPAPSVYPPVQSPSAHSSQQYGVILARSPLLPSPYVHGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGQLYGMAQVSPSAPAYAGSYQPMPSAGPSSTSQKEHSFPDRPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRSSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVVGTLAPSSSSSELRPEQFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMPSHSSVQRSSQSSGPSVSSTSSTTSVEGRT 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38234292 38238334 + Maker00031426 Lcy11g1433 647334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1433 532 ProSiteProfiles Zinc finger C3H1-type profile. 354 382 IPR000571 GO:0046872(InterPro)
Lcy11g1433 532 ProSiteProfiles Zinc finger C3H1-type profile. 400 428 IPR000571 GO:0046872(InterPro)
Lcy11g1433 532 MobiDBLite consensus disorder prediction 330 357 - -
Lcy11g1433 532 FunFam CCCH type zinc finger protein 352 437 - -
Lcy11g1433 532 Gene3D - 345 394 - -
Lcy11g1433 532 Gene3D - 132 224 - -
Lcy11g1433 532 SUPERFAMILY CCCH zinc finger 359 381 IPR036855 GO:0046872(InterPro)
Lcy11g1433 532 SUPERFAMILY CCCH zinc finger 136 162 IPR036855 GO:0046872(InterPro)
Lcy11g1433 532 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872(InterPro)
Lcy11g1433 532 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 402 427 IPR000571 GO:0046872(InterPro)
Lcy11g1433 532 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 355 381 IPR000571 GO:0046872(InterPro)
Lcy11g1433 532 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 160 IPR000571 GO:0046872(InterPro)
Lcy11g1433 532 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 191 217 IPR000571 GO:0046872(InterPro)
Lcy11g1433 532 SUPERFAMILY CCCH zinc finger 404 431 IPR036855 GO:0046872(InterPro)
Lcy11g1433 532 PANTHER PROTEIN PHOSPHATASE RELATED 112 428 IPR050974 GO:0003729(PANTHER)
Lcy11g1433 532 MobiDBLite consensus disorder prediction 456 532 - -
Lcy11g1433 532 Gene3D - 397 443 - -
Lcy11g1433 532 SUPERFAMILY CCCH zinc finger 188 218 IPR036855 GO:0046872(InterPro)
Lcy11g1433 532 ProSiteProfiles Zinc finger C3H1-type profile. 190 218 IPR000571 GO:0046872(InterPro)
Lcy11g1433 532 SMART c3hfinal6 354 381 IPR000571 GO:0046872(InterPro)
Lcy11g1433 532 SMART c3hfinal6 133 160 IPR000571 GO:0046872(InterPro)
Lcy11g1433 532 SMART c3hfinal6 190 217 IPR000571 GO:0046872(InterPro)
Lcy11g1433 532 SMART c3hfinal6 400 427 IPR000571 GO:0046872(InterPro)
Lcy11g1433 532 MobiDBLite consensus disorder prediction 336 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1433 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1433 Lcy-Chr11:38234292 Lcy2g1465 Lcy-Chr2:18399312 3.46E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g338 . Blo12g00022 . . . . . . . . Cma06g01483 Cma14g01634 Car06g01276 Car14g01459 Sed02g1209 Cpe08g00200 Cpe03g01375 Bhi01g00972 Tan10g0977 Cmetu06g2468 . Hepe05g1466 . Lcy11g1433 . . . . . . . Cone14ag0775 Cone15ag0782 . . Lsi05g01521 . . Cme06g00709 . Blo07g00181 . . . Bpe13g00654 . Bma06g01512 . Cmo06g01479 Cmo14g01672 . . . . . . . . . . . . . Cla05g00632 Cam05g0692 Cec05g0702 Cco05g0698 Clacu05g0686 Cmu05g0654 Cre05g0725 . Csa03g01433 Chy06g00673 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003136 3 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 1 1 1 1 1 4 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19128 None None None None Lcy TF