Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1435 ATGGCTGGAAAACCCTCTCGTTACGGCATCCCAAAACCCGCGAACTTGCTCTGCAATTTGCCGCTTCATCTGGATTTGGAAATGGCGGCCATTTCAATTTGCTTCGTTCCACAAGCTCTTGCACGGCCCAGAATTCGAAACCCTAGAAGAATACCGTTGCCCAAGAAGCTTCGTGGGAACAACAAGCTCGAGCGCAATAGCGTCAAGATCAGAACCAATTCGAAGGAGTTATCTTCCATTGGCGTTGAAGCCACCACCTACACTCGCCTCCCTCCCAGGGAAGACTTCTCTCTTCTTAGCTTTGATTCTGCTTCTTCTTCGAAGGATTCGTCTGAGGTGAAGCTTTTGGATTCGGATGTTGCGATAATTGAGGAGGAAGAGGATTTGGATTCTTTGAACTACGAAGAGCGGGAGGAGGAAGTGGAAGGAGGATTGGATGGTAATTTGGGGTTTGGGAATGGTTATGGGAAGTTTGAAGTGTTTGAGGGGGAATATGACTCGGAAATGGAGGAGTATGGCGATGATGGTGATGTGGAAGAGGAAGATGAAGAAGGAGAGAAGGTTTTGGCATTTAGGAAGGGGAATTTTGTTGATACTGATGAAGCGGGTAGTGATTATGTTGGTGTTTATGAAGCTGGTGAAGGAGCAAGCTCTTTCTTCGACGGAGGAGATGTGAAGGAGAAGGGGCTGCCAGCGGTAATGCGGTGCTTTGATCGAGCAAAAATCTACGTTAAAGCTGGTGATGGTGGCAATGGCGTTGTGGCATTTCGGCGCGAGAAGTATGTGCCGATGGGTGGCCCTTCAGGAGGAGATGGAGGGAGAGGTGGGAATGTGTATGTTGAAGTTGATGGGTCGATGAATTCGCTTTTGCCATTTCGAAATGGTATACATTTTCGTGCAGGAAGGGGTAGTCATGGGCAGGGGAGAATGCAAAACGGGGCAAAGGGTGAGGATGTAGTGGTGAAAGTGGCACCTGGAACAGTGATTAGAGACGCATTCAGCCAAGAGGTTCTGCTGGAATTGCTGCATCCAGGGCAGCGGGCTCTGTTGCTGCGCGGTGGAAGAGGTGGGAGAGGCAATGCATCATTTAAGTCTGGGACAAATAAGGTTCCAAAGATTTCAGAAAATGGAGAAGAGGGTTCAGAAATGTGGTTGGAGTTGGAGCTAAAGCTTGTTGCAGACGTTGGAATCGTGGGGGCACCAAATGCAGGGAAAAGCACACTTTTGAGTGTGATAAGTGCTGCACAGCCAGCCATAGCAAACTACCCTTTTACCACTCTACTCCCAAACTTGGGTGTTGTTTCATTCGACTATGATTCAACTATGGTGGTAGCAGATCTTCCAGGATTACTTGAAGGGGCACACGAGGGCTTTGGTTTAGGCCATGAATTTCTACGTCACACTGAAAGATGTTCTGCACTGGTGCATGTGGTTGATGGATCAGGACCACAACCTGAATATGAATTTGATGCTGTTCGTTTGGAGTTGGAGCTCTTTAGCCCTGAACTAGCTGAAAAGCCCTATCTTGTTGCCTATAATAAAATGGATCTTCCTGAAGCGTACGAAAACTGGCCAGCATTCAAGGAAAAGCTACAAGCTCGTGGGATTGAACCTTTTTGCATGAGTGCTGTAAAAAGAGAGGGCACTCATGAAGTCATTAGTGCTGCATATCAGCTGCTAAGGGAAAATGAAGAAGCCAACAGGGAATTTCAAGGTGGCAAAATACCAGAGAATCTGGACCATGTGGCAGATAGAATACACAAGCAGCGTAGTGCTTCTATTGATGACTTTGAAATTATTCATGATAGCGGTTCCTGGCATGTAGTAGGATCTGGTTTACAACGTTTTGTTCAAATGACAAATTGGCGTTACATGGAGTCCGAAAGAAGGTTCCAACATGTCATGGAGGCTTGTGGTGTCAACAAGTCTCTCAGAAAACTTGGCATTAAGGAGGGTGACACAGTATTTGTTGCAGAGATGGAGATGATCTGGCATGATTCACCAAATAGTTCTGGTCCATCTAATATGAAGAAAAGATCAGATTCGGTCAAATGGCCAGAGTGGAAGTAA 2070 46.62 MAGKPSRYGIPKPANLLCNLPLHLDLEMAAISICFVPQALARPRIRNPRRIPLPKKLRGNNKLERNSVKIRTNSKELSSIGVEATTYTRLPPREDFSLLSFDSASSSKDSSEVKLLDSDVAIIEEEEDLDSLNYEEREEEVEGGLDGNLGFGNGYGKFEVFEGEYDSEMEEYGDDGDVEEEDEEGEKVLAFRKGNFVDTDEAGSDYVGVYEAGEGASSFFDGGDVKEKGLPAVMRCFDRAKIYVKAGDGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDGSMNSLLPFRNGIHFRAGRGSHGQGRMQNGAKGEDVVVKVAPGTVIRDAFSQEVLLELLHPGQRALLLRGGRGGRGNASFKSGTNKVPKISENGEEGSEMWLELELKLVADVGIVGAPNAGKSTLLSVISAAQPAIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHEGFGLGHEFLRHTERCSALVHVVDGSGPQPEYEFDAVRLELELFSPELAEKPYLVAYNKMDLPEAYENWPAFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLRENEEANREFQGGKIPENLDHVADRIHKQRSASIDDFEIIHDSGSWHVVGSGLQRFVQMTNWRYMESERRFQHVMEACGVNKSLRKLGIKEGDTVFVAEMEMIWHDSPNSSGPSNMKKRSDSVKWPEWK 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38255398 38263580 - Maker00031975 Lcy11g1435 647336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1435 689 ProSiteProfiles Obg C-terminal (OCT) domain profile. 589 666 IPR015349 GO:0000166(InterPro)
Lcy11g1435 689 MobiDBLite consensus disorder prediction 667 689 - -
Lcy11g1435 689 Coils Coil 122 142 - -
Lcy11g1435 689 Gene3D - 392 571 IPR027417 -
Lcy11g1435 689 ProSiteProfiles Obg domain profile. 234 392 IPR006169 -
Lcy11g1435 689 Pfam Domain of unknown function (DUF1967) 597 664 IPR015349 GO:0000166(InterPro)
Lcy11g1435 689 Gene3D GTP1/OBG domain 232 391 IPR036726 -
Lcy11g1435 689 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 393 561 IPR031167 GO:0005525(InterPro)
Lcy11g1435 689 Pfam GTP1/OBG 238 391 IPR006169 -
Lcy11g1435 689 FunFam GTPase Obg 392 571 - -
Lcy11g1435 689 SUPERFAMILY Obg GTP-binding protein C-terminal domain 596 666 IPR036346 -
Lcy11g1435 689 CDD Obg 393 560 IPR031167 GO:0005525(InterPro)
Lcy11g1435 689 PRINTS GTP1/OBG GTP-binding protein family signature 416 434 IPR006073 GO:0005525(InterPro)
Lcy11g1435 689 PRINTS GTP1/OBG GTP-binding protein family signature 461 479 IPR006073 GO:0005525(InterPro)
Lcy11g1435 689 PRINTS GTP1/OBG GTP-binding protein family signature 395 415 IPR006073 GO:0005525(InterPro)
Lcy11g1435 689 PRINTS GTP1/OBG GTP-binding protein family signature 444 459 IPR006073 GO:0005525(InterPro)
Lcy11g1435 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 564 IPR027417 -
Lcy11g1435 689 ProSitePatterns GTP1/OBG family signature. 446 459 IPR006074 GO:0005525(InterPro)
Lcy11g1435 689 Pfam 50S ribosome-binding GTPase 394 514 IPR006073 GO:0005525(InterPro)
Lcy11g1435 689 SUPERFAMILY Obg GTP-binding protein N-terminal domain 237 391 IPR036726 -
Lcy11g1435 689 FunFam GTPase Obg 234 391 - -
Lcy11g1435 689 NCBIfam Obg family GTPase CgtA C-terminal domain 597 664 IPR015349 GO:0000166(InterPro)
Lcy11g1435 689 Hamap GTPase Obg [obg]. 235 561 IPR014100 GO:0000287(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy11g1435 689 NCBIfam Obg family GTPase CgtA 237 560 IPR014100 GO:0000287(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy11g1435 689 Gene3D - 599 667 IPR036346 -
Lcy11g1435 689 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 224 568 IPR045086 GO:0003924(PANTHER)|GO:0003924(InterPro)|GO:0005525(PANTHER)|GO:0005525(InterPro)|GO:0005739(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1435 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0190 Lcy-Chr11:2163733 Lcy11g1435 Lcy-Chr11:38255398 9.68E-39 dispersed
Lcy11g1435 Lcy-Chr11:38255398 Lcy9g2231 Lcy-Chr9:46860886 1.96E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009907 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33