Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1454 | ATGGGGTGTGTTTTTGGGCGAGAGGTATCGGCCAAGCCCGTCGAGAGAGAGGAGGGGAGGGAGAAAGCCGGGGAGGAAATTAGGGCTTCTGCGAAAGCGGAGGTCGGTGAGGTTCCGGTTAATGTCGATGGTAATGTTCGCAATGGCGGAAGTAGGAAGGAGGTTGAAGATGATAGAGGCTCGAGGCCGAGGCGGCGATCGTCCAGGCCGAATCCGAGATCGAGTAATCCGCCGAAGCATGTGCATGGCGAGCAAGTCGCTGCTGGTTGGCCGTCTTGGCTCTCCGCCGTCGCCGGCGAGGCTATCAATGGATGGATTCCTCGCCGTGCTGACAGTTTCGAGAAGCTTGATAAAATTGGGCAAGGGACGTATAGTAATGTGTACAAAGCAAGGGACACATTGACGGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCTGAGAGTGTGAGGTTTATGGCCCGGGAAATTCTCATCCTGCGACGTTTGGATCATCCAAATGTTGTAAAGCTCGAAGGCTTGGTGACGTCGCGGATGTCGTGTAGTTTGTATCTTGTATTTGAATACATGGAGCATGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTCACGGAACCGCAGGTTAAATGTTACATGAACCAATTGTTATCAGGGCTTGAACACTGTCACAACCGTCATGTGTTGCATCGTGATATAAAGGGATCAAATCTTCTGATTGATAATGGTGGGATCCTTAAGATAGCTGATTTTGGATTGGCTTCTGTCTTTGATCCCAACCACAAGCAGCCGATGACGAGTAGGGTGGTTACGCTTTGGTATCGACCTCCCGAACTTCTTCTTGGAGCTACTGATTATGGCGTTGGTGTAGACCTTTGGAGTGCTGGCTGCATTTTAGCTGAGCTGTTAGCTGGAAAGCCGATCATGCCCGGTCGCACGGAGGTCGAGCAGCTACATAAGATATTCAAGCTATGTGGCTCTCCTACAGAAGAATACTGGAAAAAGTCTAGATTGCCACATGCGACCATATTTAAGCCTCAACATTCATACAAGAGATGCATATCAGAGACGTTTAAAGACTTCCCGCCATCATCTCTGCCATTAATCGAGACACTTCTTGCAATCGACCCGGCTGAACGCCTAACTGCCACGGCTGCTTTACATAGTGAATTTTTCACTACCAAGCCATATGCTTGTGAGCCTTCCAGCCTTCCCAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTGCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGCAGAAGCAATGCAGATGGGGTGAAGAAAGCACGAGCACGTGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAACCTCGATAGGCGGCGTCTCATAACACACGCAAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGATGGAGCCCTTGGCTACCCACTGGGATCTTCGCATCACGTCGATCCAATCTACGATCCTCCCGACGTTCCATTTAGCACCATGAATTTCTCATATCCAAAAGCAAACATCCAAACATGGTCTGGTCCCTTGATGGACCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGTCATTCATCAAAATCATCCGACTTGCGGAAGGATAAAAATTCTGCTCGTATCTAA | 1707 | 49.44 | MGCVFGREVSAKPVEREEGREKAGEEIRASAKAEVGEVPVNVDGNVRNGGSRKEVEDDRGSRPRRRSSRPNPRSSNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIDNGGILKIADFGLASVFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEEYWKKSRLPHATIFKPQHSYKRCISETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKKARARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHVDPIYDPPDVPFSTMNFSYPKANIQTWSGPLMDPAAVGAPRRKKHTAGHSSKSSDLRKDKNSARI | 568 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 38437990 | 38442298 | + | Maker00031593 | Lcy11g1454 | 647355 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1454 | 568 | FunFam | probable serine/threonine-protein kinase At1g54610 | 100 | 195 | - | - | |
Lcy11g1454 | 568 | Pfam | Protein kinase domain | 113 | 397 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g1454 | 568 | MobiDBLite | consensus disorder prediction | 531 | 568 | - | - | |
Lcy11g1454 | 568 | PANTHER | CELL DIVISION PROTEIN KINASE | 112 | 397 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Lcy11g1454 | 568 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 233 | 245 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy11g1454 | 568 | ProSitePatterns | Protein kinases ATP-binding region signature. | 119 | 142 | IPR017441 | GO:0005524(InterPro) | |
Lcy11g1454 | 568 | MobiDBLite | consensus disorder prediction | 552 | 568 | - | - | |
Lcy11g1454 | 568 | ProSiteProfiles | Protein kinase domain profile. | 113 | 397 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g1454 | 568 | FunFam | probable serine/threonine-protein kinase At1g54610 | 196 | 437 | - | - | |
Lcy11g1454 | 568 | MobiDBLite | consensus disorder prediction | 10 | 32 | - | - | |
Lcy11g1454 | 568 | SMART | serkin_6 | 113 | 397 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g1454 | 568 | Gene3D | Phosphorylase Kinase; domain 1 | 100 | 195 | - | - | |
Lcy11g1454 | 568 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
Lcy11g1454 | 568 | CDD | STKc_CDK9_like | 113 | 397 | - | - | |
Lcy11g1454 | 568 | MobiDBLite | consensus disorder prediction | 49 | 65 | - | - | |
Lcy11g1454 | 568 | SUPERFAMILY | Protein kinase-like (PK-like) | 106 | 402 | IPR011009 | - | |
Lcy11g1454 | 568 | MobiDBLite | consensus disorder prediction | 477 | 498 | - | - | |
Lcy11g1454 | 568 | Gene3D | Transferase(Phosphotransferase) domain 1 | 196 | 436 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g2039 | Lcy-Chr10:44495150 | Lcy11g1454 | Lcy-Chr11:38437990 | 7.78E-179 | dispersed | |
Lcy11g1454 | Lcy-Chr11:38437990 | Lcy4g1937 | Lcy-Chr4:45705740 | 1.30E-261 | dispersed | |
Lcy11g1454 | Lcy-Chr11:38437990 | Lcy2g1834 | Lcy-Chr2:31184311 | 1.07E-289 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65455 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1454 | K08819 | - | csv:101217952 | 1014.99 |