Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1454 ATGGGGTGTGTTTTTGGGCGAGAGGTATCGGCCAAGCCCGTCGAGAGAGAGGAGGGGAGGGAGAAAGCCGGGGAGGAAATTAGGGCTTCTGCGAAAGCGGAGGTCGGTGAGGTTCCGGTTAATGTCGATGGTAATGTTCGCAATGGCGGAAGTAGGAAGGAGGTTGAAGATGATAGAGGCTCGAGGCCGAGGCGGCGATCGTCCAGGCCGAATCCGAGATCGAGTAATCCGCCGAAGCATGTGCATGGCGAGCAAGTCGCTGCTGGTTGGCCGTCTTGGCTCTCCGCCGTCGCCGGCGAGGCTATCAATGGATGGATTCCTCGCCGTGCTGACAGTTTCGAGAAGCTTGATAAAATTGGGCAAGGGACGTATAGTAATGTGTACAAAGCAAGGGACACATTGACGGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCTGAGAGTGTGAGGTTTATGGCCCGGGAAATTCTCATCCTGCGACGTTTGGATCATCCAAATGTTGTAAAGCTCGAAGGCTTGGTGACGTCGCGGATGTCGTGTAGTTTGTATCTTGTATTTGAATACATGGAGCATGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTCACGGAACCGCAGGTTAAATGTTACATGAACCAATTGTTATCAGGGCTTGAACACTGTCACAACCGTCATGTGTTGCATCGTGATATAAAGGGATCAAATCTTCTGATTGATAATGGTGGGATCCTTAAGATAGCTGATTTTGGATTGGCTTCTGTCTTTGATCCCAACCACAAGCAGCCGATGACGAGTAGGGTGGTTACGCTTTGGTATCGACCTCCCGAACTTCTTCTTGGAGCTACTGATTATGGCGTTGGTGTAGACCTTTGGAGTGCTGGCTGCATTTTAGCTGAGCTGTTAGCTGGAAAGCCGATCATGCCCGGTCGCACGGAGGTCGAGCAGCTACATAAGATATTCAAGCTATGTGGCTCTCCTACAGAAGAATACTGGAAAAAGTCTAGATTGCCACATGCGACCATATTTAAGCCTCAACATTCATACAAGAGATGCATATCAGAGACGTTTAAAGACTTCCCGCCATCATCTCTGCCATTAATCGAGACACTTCTTGCAATCGACCCGGCTGAACGCCTAACTGCCACGGCTGCTTTACATAGTGAATTTTTCACTACCAAGCCATATGCTTGTGAGCCTTCCAGCCTTCCCAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTGCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGCAGAAGCAATGCAGATGGGGTGAAGAAAGCACGAGCACGTGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAACCTCGATAGGCGGCGTCTCATAACACACGCAAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGATGGAGCCCTTGGCTACCCACTGGGATCTTCGCATCACGTCGATCCAATCTACGATCCTCCCGACGTTCCATTTAGCACCATGAATTTCTCATATCCAAAAGCAAACATCCAAACATGGTCTGGTCCCTTGATGGACCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGTCATTCATCAAAATCATCCGACTTGCGGAAGGATAAAAATTCTGCTCGTATCTAA 1707 49.44 MGCVFGREVSAKPVEREEGREKAGEEIRASAKAEVGEVPVNVDGNVRNGGSRKEVEDDRGSRPRRRSSRPNPRSSNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIDNGGILKIADFGLASVFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEEYWKKSRLPHATIFKPQHSYKRCISETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKKARARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHVDPIYDPPDVPFSTMNFSYPKANIQTWSGPLMDPAAVGAPRRKKHTAGHSSKSSDLRKDKNSARI 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38437990 38442298 + Maker00031593 Lcy11g1454 647355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1454 568 FunFam probable serine/threonine-protein kinase At1g54610 100 195 - -
Lcy11g1454 568 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1454 568 MobiDBLite consensus disorder prediction 531 568 - -
Lcy11g1454 568 PANTHER CELL DIVISION PROTEIN KINASE 112 397 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lcy11g1454 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1454 568 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524(InterPro)
Lcy11g1454 568 MobiDBLite consensus disorder prediction 552 568 - -
Lcy11g1454 568 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1454 568 FunFam probable serine/threonine-protein kinase At1g54610 196 437 - -
Lcy11g1454 568 MobiDBLite consensus disorder prediction 10 32 - -
Lcy11g1454 568 SMART serkin_6 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1454 568 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
Lcy11g1454 568 MobiDBLite consensus disorder prediction 1 85 - -
Lcy11g1454 568 CDD STKc_CDK9_like 113 397 - -
Lcy11g1454 568 MobiDBLite consensus disorder prediction 49 65 - -
Lcy11g1454 568 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
Lcy11g1454 568 MobiDBLite consensus disorder prediction 477 498 - -
Lcy11g1454 568 Gene3D Transferase(Phosphotransferase) domain 1 196 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1454 K08819 - - csv:101217952 1014.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2039 Lcy-Chr10:44495150 Lcy11g1454 Lcy-Chr11:38437990 7.78E-179 dispersed
Lcy11g1454 Lcy-Chr11:38437990 Lcy4g1937 Lcy-Chr4:45705740 1.30E-261 dispersed
Lcy11g1454 Lcy-Chr11:38437990 Lcy2g1834 Lcy-Chr2:31184311 1.07E-289 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy7g0583 . 48 346 Core Cell Cycle Gene Families AT3G48750 82.6 1.2e-144 510.0
Lcy9g2355 . 11 301 Core Cell Cycle Gene Families AT3G48750 51.3 3.8e-87 318.9
Lcy1g1650 . 1 349 Core Cell Cycle Gene Families AT3G54180 74.5 6.9e-148 520.8
Lcy9g2355 . 11 304 Core Cell Cycle Gene Families AT3G54180 63.5 5.2e-111 398.3
Lcy7g0583 . 48 341 Core Cell Cycle Gene Families AT3G54180 51.8 1.5e-86 317.0
Lcy1g1650 . 1 349 Core Cell Cycle Gene Families AT2G38620 63.0 1.8e-117 419.5
Lcy9g2355 . 11 304 Core Cell Cycle Gene Families AT2G38620 55.7 2.5e-87 319.3
Lcy9g2355 . 1 301 Core Cell Cycle Gene Families AT1G76540 81.4 3.2e-148 521.9
Lcy1g1650 . 1 343 Core Cell Cycle Gene Families AT1G76540 58.0 1.8e-111 399.8
Lcy7g0583 . 48 341 Core Cell Cycle Gene Families AT1G76540 51.7 3.7e-88 322.4
Lcy9g2355 . 8 301 Core Cell Cycle Gene Families AT1G20930 84.7 8.9e-151 530.4
Lcy1g1650 . 1 349 Core Cell Cycle Gene Families AT1G20930 58.3 1.5e-113 406.8
Lcy7g0583 . 48 341 Core Cell Cycle Gene Families AT1G20930 53.3 4.7e-91 332.0
Lcy5g1356 . 346 869 Core Cell Cycle Gene Families AT5G10270 55.5 1.2e-149 527.3
Lcy8g2188 . 1 306 Core Cell Cycle Gene Families AT5G10270 70.4 2.2e-119 426.8
Lcy11g1454 . 105 421 Core Cell Cycle Gene Families AT5G10270 53.5 8.2e-98 355.1
Lcy6g0602 . 120 436 Core Cell Cycle Gene Families AT5G10270 55.0 1.4e-97 354.4
Lcy2g1834 . 113 431 Core Cell Cycle Gene Families AT5G10270 51.3 4.1e-97 352.8
Lcy5g2098 . 86 402 Core Cell Cycle Gene Families AT5G10270 53.5 2.6e-96 350.1
Lcy7g1603 . 221 448 Core Cell Cycle Gene Families AT5G10270 76.3 1.3e-95 347.8
Lcy8g1544 . 142 458 Core Cell Cycle Gene Families AT5G10270 52.9 1.3e-95 347.8
Lcy8g1543 . 128 454 Core Cell Cycle Gene Families AT5G10270 50.7 1.9e-94 344.0
Lcy4g1937 . 101 423 Core Cell Cycle Gene Families AT5G10270 51.0 2.5e-94 343.6
Lcy9g0129 . 139 458 Core Cell Cycle Gene Families AT5G10270 52.5 4.2e-94 342.8
Lcy5g2517 . 121 439 Core Cell Cycle Gene Families AT5G10270 51.0 2.3e-92 337.0
Lcy7g1665 . 9 311 Core Cell Cycle Gene Families AT5G10270 52.5 2.8e-90 330.1
Lcy8g2186 . 156 431 Core Cell Cycle Gene Families AT5G10270 58.8 5.2e-76 282.7
Lcy7g1607 . 148 338 Core Cell Cycle Gene Families AT5G10270 69.1 2.9e-66 250.4
Lcy5g1356 . 416 867 Core Cell Cycle Gene Families AT5G64960 58.2 4.7e-132 468.8
Lcy8g2188 . 96 306 Core Cell Cycle Gene Families AT5G64960 76.8 1.8e-91 334.0
Lcy6g0602 . 174 436 Core Cell Cycle Gene Families AT5G64960 54.7 1.3e-81 301.2
Lcy8g1543 . 182 446 Core Cell Cycle Gene Families AT5G64960 53.6 2.2e-81 300.4
Lcy8g1544 . 196 458 Core Cell Cycle Gene Families AT5G64960 53.6 6.4e-81 298.9
Lcy11g1454 . 159 421 Core Cell Cycle Gene Families AT5G64960 52.5 8.3e-81 298.5
Lcy5g2098 . 140 402 Core Cell Cycle Gene Families AT5G64960 53.2 1.1e-80 298.1
Lcy2g1834 . 167 431 Core Cell Cycle Gene Families AT5G64960 50.7 2.4e-80 297.0
Lcy7g1603 . 248 448 Core Cell Cycle Gene Families AT5G64960 74.1 9.2e-80 295.0
Lcy7g1665 . 49 311 Core Cell Cycle Gene Families AT5G64960 52.9 2.7e-79 293.5
Lcy9g0129 . 193 458 Core Cell Cycle Gene Families AT5G64960 53.0 6.6e-78 288.9
Lcy5g2517 . 175 439 Core Cell Cycle Gene Families AT5G64960 50.4 9.5e-77 285.0
Lcy8g2186 . 156 429 Core Cell Cycle Gene Families AT5G64960 58.7 7.8e-71 265.4
Lcy7g1607 . 175 338 Core Cell Cycle Gene Families AT5G64960 65.2 6.9e-51 199.1
Lcy2g0403 . 4 437 Core Cell Cycle Gene Families AT1G73690 70.5 1.8e-169 592.8
Lcy2g0403 . 12 365 Core Cell Cycle Gene Families AT1G66750 73.2 9.5e-154 540.4
Lcy2g0403 . 8 438 Core Cell Cycle Gene Families AT1G18040 71.7 2.8e-170 595.5
Lcy1g2133 . 33 315 Core Cell Cycle Gene Families AT5G63610 80.5 5.2e-139 491.9
Lcy4g2175 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.0 1.6e-172 603.2
Lcy10g1245 . 5 497 Core Cell Cycle Gene Families AT1G44110 59.9 1.0e-150 530.8
Lcy3g2082 . 226 504 Core Cell Cycle Gene Families AT1G44110 55.2 3.2e-88 323.2
Lcy9g1815 . 206 473 Core Cell Cycle Gene Families AT1G44110 57.8 5.4e-88 322.4
Lcy9g2059 . 113 382 Core Cell Cycle Gene Families AT1G44110 51.1 6.0e-79 292.4
Lcy9g1815 . 206 473 Core Cell Cycle Gene Families AT1G77390 54.1 2.2e-78 290.4
Lcy3g2082 . 225 500 Core Cell Cycle Gene Families AT1G77390 51.8 6.3e-78 288.9
Lcy9g2059 . 118 375 Core Cell Cycle Gene Families AT1G77390 50.4 1.3e-70 264.6
Lcy9g1815 . 16 484 Core Cell Cycle Gene Families AT5G25380 54.3 5.1e-120 428.7
Lcy3g2082 . 224 504 Core Cell Cycle Gene Families AT5G25380 64.1 4.5e-100 362.5
Lcy10g1245 . 217 490 Core Cell Cycle Gene Families AT5G25380 53.5 7.5e-79 292.0
Lcy9g2059 . 118 376 Core Cell Cycle Gene Families AT5G25380 50.9 5.2e-72 269.2
Lcy9g1815 . 44 422 Core Cell Cycle Gene Families AT5G11300 53.8 1.4e-95 347.4
Lcy10g1245 . 217 436 Core Cell Cycle Gene Families AT5G11300 55.5 2.8e-67 253.4
Lcy9g2059 . 113 319 Core Cell Cycle Gene Families AT5G11300 53.5 1.5e-57 221.1
Lcy13g2114 . 91 299 Core Cell Cycle Gene Families AT5G11300 50.7 3.2e-55 213.4
Lcy3g2082 . 190 504 Core Cell Cycle Gene Families AT1G15570 65.3 3.7e-118 422.5
Lcy10g1245 . 218 494 Core Cell Cycle Gene Families AT1G15570 53.2 6.5e-78 288.9
Lcy3g2082 . 4 504 Core Cell Cycle Gene Families AT1G80370 50.6 5.0e-118 422.2
Lcy9g1815 . 17 484 Core Cell Cycle Gene Families AT1G80370 50.2 5.2e-107 385.6
Lcy10g1245 . 218 495 Core Cell Cycle Gene Families AT1G80370 54.1 4.6e-79 292.7
Lcy9g2059 . 113 371 Core Cell Cycle Gene Families AT1G80370 51.3 1.7e-73 274.2
Lcy13g2114 . 3 361 Core Cell Cycle Gene Families AT5G43080 58.1 1.2e-111 400.6
Lcy9g2059 . 23 386 Core Cell Cycle Gene Families AT5G43080 56.1 2.7e-108 389.4
Lcy9g1815 . 208 474 Core Cell Cycle Gene Families AT5G43080 54.7 3.5e-79 292.7
Lcy10g1245 . 219 497 Core Cell Cycle Gene Families AT5G43080 51.8 1.3e-78 290.8
Lcy3g2082 . 227 505 Core Cell Cycle Gene Families AT5G43080 51.1 1.8e-75 280.4
Lcy13g2114 . 1 361 Core Cell Cycle Gene Families AT1G47210 57.8 2.0e-117 419.9
Lcy9g2059 . 23 386 Core Cell Cycle Gene Families AT1G47210 54.1 7.6e-109 391.3
Lcy3g2082 . 227 505 Core Cell Cycle Gene Families AT1G47210 51.1 2.2e-76 283.5
Lcy9g1815 . 208 474 Core Cell Cycle Gene Families AT1G47210 52.4 3.8e-76 282.7
Lcy4g0192 . 177 450 Core Cell Cycle Gene Families AT1G47210 52.4 6.5e-76 282.0
Lcy9g2059 . 113 383 Core Cell Cycle Gene Families AT1G47220 57.7 5.9e-89 325.1
Lcy13g2114 . 91 361 Core Cell Cycle Gene Families AT1G47220 56.6 5.2e-85 312.0
Lcy9g1815 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.3 1.1e-71 267.7
Lcy13g2114 . 1 361 Core Cell Cycle Gene Families AT1G47230 55.6 9.6e-112 401.0
Lcy9g2059 . 23 385 Core Cell Cycle Gene Families AT1G47230 55.6 8.1e-111 397.9
Lcy4g0192 . 159 450 Core Cell Cycle Gene Families AT1G47230 52.4 9.1e-78 288.1
Lcy10g1245 . 220 499 Core Cell Cycle Gene Families AT1G47230 51.1 3.8e-76 282.7
Lcy3g2082 . 229 499 Core Cell Cycle Gene Families AT1G47230 52.0 2.3e-73 273.5
Lcy9g1815 . 209 474 Core Cell Cycle Gene Families AT1G47230 51.3 1.3e-71 267.7
Lcy1g1775 . 1 450 Core Cell Cycle Gene Families AT4G37490 55.6 1.0e-117 421.0
Lcy1g1775 . 1 347 Core Cell Cycle Gene Families AT5G06150 54.0 5.0e-83 305.4
Lcy1g0554 . 169 343 Core Cell Cycle Gene Families AT5G06150 53.1 1.7e-43 174.1
Lcy1g1775 . 1 407 Core Cell Cycle Gene Families AT3G11520 57.4 2.5e-107 386.3
Lcy1g0554 . 170 395 Core Cell Cycle Gene Families AT3G11520 52.2 8.0e-61 231.9
Lcy1g1775 . 94 443 Core Cell Cycle Gene Families AT2G26760 55.2 2.6e-99 359.8
Lcy8g2036 . 80 479 Core Cell Cycle Gene Families AT2G26760 51.6 3.7e-98 355.9
Lcy1g0554 . 24 438 Core Cell Cycle Gene Families AT2G17620 61.7 5.9e-129 458.4
Lcy9g2319 . 37 435 Core Cell Cycle Gene Families AT2G17620 53.4 6.3e-107 385.2
Lcy1g0554 . 5 395 Core Cell Cycle Gene Families AT4G35620 58.4 2.8e-106 382.9
Lcy9g2319 . 37 392 Core Cell Cycle Gene Families AT4G35620 53.0 2.6e-88 323.2
Lcy9g2319 . 1 435 Core Cell Cycle Gene Families AT1G20610 64.6 3.4e-145 512.3
Lcy1g0554 . 1 438 Core Cell Cycle Gene Families AT1G20610 56.8 3.1e-122 436.0
Lcy9g2319 . 1 332 Core Cell Cycle Gene Families AT1G76310 64.1 8.8e-104 374.4
Lcy1g0554 . 1 335 Core Cell Cycle Gene Families AT1G76310 52.2 1.1e-77 287.7
Lcy8g2036 . 203 372 Core Cell Cycle Gene Families AT1G76310 52.9 3.6e-41 166.4
Lcy1g1775 . 178 343 Core Cell Cycle Gene Families AT1G76310 52.4 1.8e-40 164.1
Lcy7g0207 . 1 327 Core Cell Cycle Gene Families AT1G70210 63.6 1.2e-105 380.6
Lcy6g0441 . 46 243 Core Cell Cycle Gene Families AT1G70210 50.5 6.2e-49 192.2
Lcy1g0824 . 40 333 Core Cell Cycle Gene Families AT2G22490 54.1 3.8e-81 299.3
Lcy13g2102 . 43 318 Core Cell Cycle Gene Families AT4G34160 51.2 9.2e-70 261.5
Lcy1g0824 . 58 277 Core Cell Cycle Gene Families AT5G65420 58.6 3.7e-68 255.8
Lcy13g1500 . 69 268 Core Cell Cycle Gene Families AT5G65420 55.9 2.8e-60 229.6
Lcy1g0824 . 53 232 Core Cell Cycle Gene Families AT5G10440 58.0 6.5e-55 211.5
Lcy13g1500 . 64 242 Core Cell Cycle Gene Families AT5G10440 53.3 8.2e-50 194.5
Lcy5g1020 . 1 88 Core Cell Cycle Gene Families AT2G27960 94.3 2.4e-45 178.3
Lcy8g1946 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 2.9e-43 171.4
Lcy5g1020 . 1 83 Core Cell Cycle Gene Families AT2G27970 86.7 3.8e-40 161.0
Lcy8g1946 . 1 76 Core Cell Cycle Gene Families AT2G27970 93.4 1.1e-39 159.5
Lcy7g0716 . 243 1182 Core Cell Cycle Gene Families AT3G12280 73.8 0.0e+00 1335.1
Lcy3g1710 . 14 482 Core Cell Cycle Gene Families AT1G02970 60.4 4.5e-157 552.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000603 3 3 4 2 3 3 5 2 2 3 3 3 5 3 3 5 2 4 5 2 3 3 3 3 3 3 3 3 1 2 92
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65455 None None None None Lcy PK