Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1454 ATGGGGTGTGTTTTTGGGCGAGAGGTATCGGCCAAGCCCGTCGAGAGAGAGGAGGGGAGGGAGAAAGCCGGGGAGGAAATTAGGGCTTCTGCGAAAGCGGAGGTCGGTGAGGTTCCGGTTAATGTCGATGGTAATGTTCGCAATGGCGGAAGTAGGAAGGAGGTTGAAGATGATAGAGGCTCGAGGCCGAGGCGGCGATCGTCCAGGCCGAATCCGAGATCGAGTAATCCGCCGAAGCATGTGCATGGCGAGCAAGTCGCTGCTGGTTGGCCGTCTTGGCTCTCCGCCGTCGCCGGCGAGGCTATCAATGGATGGATTCCTCGCCGTGCTGACAGTTTCGAGAAGCTTGATAAAATTGGGCAAGGGACGTATAGTAATGTGTACAAAGCAAGGGACACATTGACGGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCTGAGAGTGTGAGGTTTATGGCCCGGGAAATTCTCATCCTGCGACGTTTGGATCATCCAAATGTTGTAAAGCTCGAAGGCTTGGTGACGTCGCGGATGTCGTGTAGTTTGTATCTTGTATTTGAATACATGGAGCATGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTCACGGAACCGCAGGTTAAATGTTACATGAACCAATTGTTATCAGGGCTTGAACACTGTCACAACCGTCATGTGTTGCATCGTGATATAAAGGGATCAAATCTTCTGATTGATAATGGTGGGATCCTTAAGATAGCTGATTTTGGATTGGCTTCTGTCTTTGATCCCAACCACAAGCAGCCGATGACGAGTAGGGTGGTTACGCTTTGGTATCGACCTCCCGAACTTCTTCTTGGAGCTACTGATTATGGCGTTGGTGTAGACCTTTGGAGTGCTGGCTGCATTTTAGCTGAGCTGTTAGCTGGAAAGCCGATCATGCCCGGTCGCACGGAGGTCGAGCAGCTACATAAGATATTCAAGCTATGTGGCTCTCCTACAGAAGAATACTGGAAAAAGTCTAGATTGCCACATGCGACCATATTTAAGCCTCAACATTCATACAAGAGATGCATATCAGAGACGTTTAAAGACTTCCCGCCATCATCTCTGCCATTAATCGAGACACTTCTTGCAATCGACCCGGCTGAACGCCTAACTGCCACGGCTGCTTTACATAGTGAATTTTTCACTACCAAGCCATATGCTTGTGAGCCTTCCAGCCTTCCCAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTGCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGCAGAAGCAATGCAGATGGGGTGAAGAAAGCACGAGCACGTGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAACCTCGATAGGCGGCGTCTCATAACACACGCAAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGATGGAGCCCTTGGCTACCCACTGGGATCTTCGCATCACGTCGATCCAATCTACGATCCTCCCGACGTTCCATTTAGCACCATGAATTTCTCATATCCAAAAGCAAACATCCAAACATGGTCTGGTCCCTTGATGGACCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGTCATTCATCAAAATCATCCGACTTGCGGAAGGATAAAAATTCTGCTCGTATCTAA 1707 49.44 MGCVFGREVSAKPVEREEGREKAGEEIRASAKAEVGEVPVNVDGNVRNGGSRKEVEDDRGSRPRRRSSRPNPRSSNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIDNGGILKIADFGLASVFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEEYWKKSRLPHATIFKPQHSYKRCISETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKKARARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHVDPIYDPPDVPFSTMNFSYPKANIQTWSGPLMDPAAVGAPRRKKHTAGHSSKSSDLRKDKNSARI 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38437990 38442298 + Maker00031593 Lcy11g1454 647355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1454 568 FunFam probable serine/threonine-protein kinase At1g54610 100 195 - -
Lcy11g1454 568 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1454 568 MobiDBLite consensus disorder prediction 531 568 - -
Lcy11g1454 568 PANTHER CELL DIVISION PROTEIN KINASE 112 397 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lcy11g1454 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1454 568 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524(InterPro)
Lcy11g1454 568 MobiDBLite consensus disorder prediction 552 568 - -
Lcy11g1454 568 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1454 568 FunFam probable serine/threonine-protein kinase At1g54610 196 437 - -
Lcy11g1454 568 MobiDBLite consensus disorder prediction 10 32 - -
Lcy11g1454 568 SMART serkin_6 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1454 568 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
Lcy11g1454 568 MobiDBLite consensus disorder prediction 1 85 - -
Lcy11g1454 568 CDD STKc_CDK9_like 113 397 - -
Lcy11g1454 568 MobiDBLite consensus disorder prediction 49 65 - -
Lcy11g1454 568 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
Lcy11g1454 568 MobiDBLite consensus disorder prediction 477 498 - -
Lcy11g1454 568 Gene3D Transferase(Phosphotransferase) domain 1 196 436 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2039 Lcy-Chr10:44495150 Lcy11g1454 Lcy-Chr11:38437990 7.78E-179 dispersed
Lcy11g1454 Lcy-Chr11:38437990 Lcy4g1937 Lcy-Chr4:45705740 1.30E-261 dispersed
Lcy11g1454 Lcy-Chr11:38437990 Lcy2g1834 Lcy-Chr2:31184311 1.07E-289 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65455 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1454 K08819 - csv:101217952 1014.99