Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1455 | ATGTCTTTGAGGAGTATAATCCAGGAAATGAGATCCAGGTCCCGCCGTGTGGTTCAGGACGGATCGACGGCCGAAGTCGGCGACGGTTTGGCGCAGAGCTGTTGGGCTCACATGCCTCAGGAGTTGCTGAGGGAGGTTCTGATTAGAATTGAGAGCTCTGAGAATGCTTGGCCTCCGCGGAAGAGCGTCGTGGCCTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACCAAGGAGATTGTTAAAACTCCCGAGGTTTCTGGCAGATTGACGTTTCCTATCTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCACTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAACTAAGATCTAATTTTTTAGGAACCAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGATTTCAAAAAGTCGCTCCTCTAGGCTTGTGGGCCTCAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGAGAGACTAATATGGTTTATATTGCCATCAGGGGTCCAAGGAGAATGCATTGTGTCATGGATGCCGTTCCTGCCTCCGCTATTGAACCAGGAGGGATGGCTCCAATACAGACTGAATTCTCCCCAAGCCGTATAGATTTTCTTCCATCATTGAGATTTTCCCGGTCAAAATCGAATCTAACAGACGATCAACCATCAGGATCTTCAACTAATCAGAAAGATGGAGGTCTGGTGCTGAGAAACAAGGCTCCTCGGTGGCACGAACAGCTCCAGTGTTGGTGTTTGAACTTTCATGGGCGAGTGACAATTGCTTCAGTGAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGAATTGCTGGACCTGAACATGAGAAGATCATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCATTTCAGGCTTTTGCCATCTGCCTCAGCAGCTTCGATACAAAGATCGCATGTGAATGA | 1194 | 47.07 | MSLRSIIQEMRSRSRRVVQDGSTAEVGDGLAQSCWAHMPQELLREVLIRIESSENAWPPRKSVVACAGVCRSWRRITKEIVKTPEVSGRLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRETNMVYIAIRGPRRMHCVMDAVPASAIEPGGMAPIQTEFSPSRIDFLPSLRFSRSKSNLTDDQPSGSSTNQKDGGLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGIAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE | 397 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 38444903 | 38448699 | - | Maker00031949 | Lcy11g1455 | 647356 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1455 | 397 | CDD | F-box_AtTLP-like | 35 | 79 | - | - | |
Lcy11g1455 | 397 | Gene3D | Tubby Protein; Chain A | 92 | 397 | IPR025659 | - | |
Lcy11g1455 | 397 | MobiDBLite | consensus disorder prediction | 287 | 306 | - | - | |
Lcy11g1455 | 397 | SUPERFAMILY | Tubby C-terminal domain-like | 84 | 397 | IPR025659 | - | |
Lcy11g1455 | 397 | ProSitePatterns | Tub family signature 1. | 327 | 340 | IPR018066 | - | |
Lcy11g1455 | 397 | PANTHER | TUBBY-RELATED | 30 | 396 | - | - | |
Lcy11g1455 | 397 | Pfam | Tub family | 96 | 392 | IPR000007 | - | |
Lcy11g1455 | 397 | PRINTS | Tubby superfamily signature | 166 | 190 | IPR000007 | - | |
Lcy11g1455 | 397 | PRINTS | Tubby superfamily signature | 309 | 326 | IPR000007 | - | |
Lcy11g1455 | 397 | PRINTS | Tubby superfamily signature | 327 | 343 | IPR000007 | - | |
Lcy11g1455 | 397 | PRINTS | Tubby superfamily signature | 215 | 242 | IPR000007 | - | |
Lcy11g1455 | 397 | PRINTS | Tubby superfamily signature | 354 | 373 | IPR000007 | - | |
Lcy11g1455 | 397 | PRINTS | Tubby superfamily signature | 375 | 397 | IPR000007 | - | |
Lcy11g1455 | 397 | PRINTS | Tubby superfamily signature | 150 | 166 | IPR000007 | - | |
Lcy11g1455 | 397 | ProSitePatterns | Tub family signature 2. | 382 | 397 | IPR018066 | - | |
Lcy11g1455 | 397 | FunFam | Tubby-like F-box protein | 92 | 397 | - | - | |
Lcy11g1455 | 397 | SUPERFAMILY | F-box domain | 29 | 78 | IPR036047 | GO:0005515(InterPro) | |
Lcy11g1455 | 397 | Gene3D | - | 29 | 82 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1455 | Lcy-Chr11:38444903 | Lcy6g0905 | Lcy-Chr6:9221119 | 5.71E-148 | dispersed | |
Lcy3g1980 | Lcy-Chr3:46927921 | Lcy11g1455 | Lcy-Chr11:38444903 | 8.62E-12 | transposed | |
Lcy11g1455 | Lcy-Chr11:38444903 | Lcy13g0203 | Lcy-Chr13:2099147 | 2.18E-227 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19131 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1455 | K19600 | - | csv:101217713 | 745.732 |