Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1455 ATGTCTTTGAGGAGTATAATCCAGGAAATGAGATCCAGGTCCCGCCGTGTGGTTCAGGACGGATCGACGGCCGAAGTCGGCGACGGTTTGGCGCAGAGCTGTTGGGCTCACATGCCTCAGGAGTTGCTGAGGGAGGTTCTGATTAGAATTGAGAGCTCTGAGAATGCTTGGCCTCCGCGGAAGAGCGTCGTGGCCTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACCAAGGAGATTGTTAAAACTCCCGAGGTTTCTGGCAGATTGACGTTTCCTATCTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCACTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAACTAAGATCTAATTTTTTAGGAACCAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGATTTCAAAAAGTCGCTCCTCTAGGCTTGTGGGCCTCAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGAGAGACTAATATGGTTTATATTGCCATCAGGGGTCCAAGGAGAATGCATTGTGTCATGGATGCCGTTCCTGCCTCCGCTATTGAACCAGGAGGGATGGCTCCAATACAGACTGAATTCTCCCCAAGCCGTATAGATTTTCTTCCATCATTGAGATTTTCCCGGTCAAAATCGAATCTAACAGACGATCAACCATCAGGATCTTCAACTAATCAGAAAGATGGAGGTCTGGTGCTGAGAAACAAGGCTCCTCGGTGGCACGAACAGCTCCAGTGTTGGTGTTTGAACTTTCATGGGCGAGTGACAATTGCTTCAGTGAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGAATTGCTGGACCTGAACATGAGAAGATCATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCATTTCAGGCTTTTGCCATCTGCCTCAGCAGCTTCGATACAAAGATCGCATGTGAATGA 1194 47.07 MSLRSIIQEMRSRSRRVVQDGSTAEVGDGLAQSCWAHMPQELLREVLIRIESSENAWPPRKSVVACAGVCRSWRRITKEIVKTPEVSGRLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRETNMVYIAIRGPRRMHCVMDAVPASAIEPGGMAPIQTEFSPSRIDFLPSLRFSRSKSNLTDDQPSGSSTNQKDGGLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGIAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38444903 38448699 - Maker00031949 Lcy11g1455 647356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1455 397 CDD F-box_AtTLP-like 35 79 - -
Lcy11g1455 397 Gene3D Tubby Protein; Chain A 92 397 IPR025659 -
Lcy11g1455 397 MobiDBLite consensus disorder prediction 287 306 - -
Lcy11g1455 397 SUPERFAMILY Tubby C-terminal domain-like 84 397 IPR025659 -
Lcy11g1455 397 ProSitePatterns Tub family signature 1. 327 340 IPR018066 -
Lcy11g1455 397 PANTHER TUBBY-RELATED 30 396 - -
Lcy11g1455 397 Pfam Tub family 96 392 IPR000007 -
Lcy11g1455 397 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Lcy11g1455 397 PRINTS Tubby superfamily signature 309 326 IPR000007 -
Lcy11g1455 397 PRINTS Tubby superfamily signature 327 343 IPR000007 -
Lcy11g1455 397 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Lcy11g1455 397 PRINTS Tubby superfamily signature 354 373 IPR000007 -
Lcy11g1455 397 PRINTS Tubby superfamily signature 375 397 IPR000007 -
Lcy11g1455 397 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Lcy11g1455 397 ProSitePatterns Tub family signature 2. 382 397 IPR018066 -
Lcy11g1455 397 FunFam Tubby-like F-box protein 92 397 - -
Lcy11g1455 397 SUPERFAMILY F-box domain 29 78 IPR036047 GO:0005515(InterPro)
Lcy11g1455 397 Gene3D - 29 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1455 Lcy-Chr11:38444903 Lcy6g0905 Lcy-Chr6:9221119 5.71E-148 dispersed
Lcy3g1980 Lcy-Chr3:46927921 Lcy11g1455 Lcy-Chr11:38444903 8.62E-12 transposed
Lcy11g1455 Lcy-Chr11:38444903 Lcy13g0203 Lcy-Chr13:2099147 2.18E-227 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19131 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1455 K19600 - csv:101217713 745.732