Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1459 ATGAATCAGTACCACATCTATGAAGCCATTGGCCGTGGGAAGTACTCGACCGTGTATAAAGGGAGGAAGAAGAAGACGATCGAGTACTCTGCGATTAAAAGCGTGGATAAATCGCAGAAGAACAAGATCCTCCAAGAAGTCAGAATACTTCACTCCCTTGATCACCCAAATGTACTCAAGTTTTACTCCTGGTATGAAACTTCTGCTCACTTATGGCTGGTATTAGAGTACTGTGTTGGAGGAGATCTCATGAGCATCCTGCGCCAGGATGGAAAACTACCTGAAGATTCTATTCATGACATTGCTAGTGATCTTGTCAGAGGATTGCAGTACTTACATTCGAAAGGAATCATATACTGTGATTTGAAGCCATCAAATATCCTACTGGACGAAAATGGACATATAAAGTTATGTGATTTCGAGCTAGCTAGAAAGTTAAGTGAGATATCAAAAACAAATTCATCGGTGCCACAAACAAAACGAGGCACACCCTGTTACATGGCTCCTGAATTGTTCAAGGATGATGGTGTCCACTCCTATTCATCTGACCTGTGGGCGCTTGGTTGTGTGCTATATGAATGCTTTGTTGGGAGGCCTCCTTTTATGGGAAGAGAATTCACTCAACTAGTAAAATCTATCCTTTCAGATCCTACCCCTATCCTCCCTGGTAGCCCTAGTCGTCCTTTTGTTAATTTGATTAATTCGTTGCTAGTAAAAGATCCAGCTGAAAGAATACAGTGGCCAGAGCTTTGTGGTCATGCTTTCTGGCGAACTAAAATCACTCAAGTATCTTTACCTCCACAACCAGCTTTCGCAAATATGATAGATCAGTATTCCAAACCTTGTTTGTCGGAAAGAAATGGTGAAAAACTTATCCAAAATAGGACTCCTCCTAAATATCGAGAAAAAGATGTGAAGGGCACTTTAAGACAAAATGAAAACTCTGCTTTTGGCTCAAGTAAAAATGAAACCCTTGTTAAAGGTACTCCAGGCAGTCAAAAAACTCAATCAAAGGTTTCTAGCAAAGTGGTTGAGGATAAGAAGTTGAAAGAAACTCCCTCTGCTTCCAAGGGAGTAAACCTTTTAAGACTCTCAAGGATAGCAAAATTAAACTTGCAAAGAGAGAATGATAAAGAAAATTACAGGAGACCCATTCCTAGCAACTCTGAAAATGATTCTGAGGTTGAAATTAAGAACACTGATATGGAGCTTGATTTTAATGAGAATGTTGAAGACGAGGCTCATGAAGAACCTGATGAGTCTGATAATTTAAATTGCAATCAGGAAGACAAGTCATCAAATCAGAATCCTCTAGGGAAGGAAGATGCACAAAATATGGGAGGAGACCTTTCAGATTATTCACCAGCTGTTAATAACAATGCCTCAGATCTATCAAATAGGCATAATCAGGAATCACCATTGGTTCCTACAGAAGTGGTTGCTACCTCACCTAGTGCTAGTCCTCAACTTAAGAACCAAAGAACTAAAGAAGGTTCAACATATGCTGTTGATCCTAATTCTCTGAAGTCATCCAATAACATGTCAGAGTTTTTCTGGCATCAATCTGATCTTTCGGTTAAACCAGTAATGCCGGGCAGAAAAGCTGTACCAGATGTTAATCATACTCTTCCTTTTGAGGGATTACAAACATCTGATTTTGTGAAGATGCCTAAGGAGCAGCAGGATGCACTGGGCAGTAAGATTATTGCCATTCTCAGTGGAAATACTAGTATTGGTGAGAAGCAAAATATGATTAGATATCTTGAGATGCTCAGTAATAATGCTGATGCAGCTAATATTTTGACAAATGGTTCAGTAATGCTCATGCTTGTAAAAATGCTCAAGCAGTCCAAAGTTTTGCAATTGCGTGTTCAACTCACATCACTAATTGGCTTGCTGATACGCCATTCTACTTTTATAGCGAATGACTTGGCAAATTCTGGTCTTTTAGTATCACTTACTGATGGACTCAGAGACAAACAAGAAAAAGTCAGGAGATTTTCTATGGCTGCTTTAGGTGAGTTGCTTTTTTACATCTCTACTCAGGAAGAGCATAATAATAGCAATGCCAATCCTCCAGAGTCTCCTTTGAAGGACATTAGATCCCCATCTGGATGGCAGGTTCCAAATTCATTAATTTCTTTAGTCTCATCAATTCTTCGAAAAGGAGAGGATGATATAACTCAACTATATGCATTGAGGACCATTGAAAACATCTGTAGTCAAGGAGCAATCTGGGCATCTCGCTTTATGAGCCAAGATGTGATTAACAATTTATGCTACATATATAGAGCTTCTGGGAAATCAGAGAATATGAGGCTCACGGCAGGATCATGTTTGGTTCGCCTAATCCGTTTCAATCCTTCTAGCATTCAGTCAGGTAGGGATGACTTCCAGATAACATTACTTCGAGTTATTGAATCTATCACAGAGGAATTCTCGGTCATACTTGAAAACCCAGATATTTTTGTCCATAAAATTCTCCCCAGTTTGGCTGTTCTTTACAAAGGTAACAAGGATGGGGATGCAAGGTTCTTATGCCTAAAAATTCTTTTTGATGTGATGGTCATTTTCCTGAATGAACCGTCCTTAGATGGGCAAAGGTTGGAGGATCTAAAGCTGATAGCAAATTTGCACTTCCTCCCTCTCTATCCTGCCTTGATAGAAGATGATGACCCCATACCCATGTATGCACAGAAACTTCTTGTGATGCTCATAGAGTGTAATTACATTAAAATTTCTGACATTTTACATCTAAAGACAATCTCCCAATGCTTTGAGTTTTTGCTTGGCGACCTCTCAAATGCAAATGTAAGTAATGTTAAGCTGTGTTTGGCACTGGCATCTGCTCCTGAAATGGAATCAAGAATACTTTCTCAACTCAAAGTTGTTAGAAGAATAGGGATTCTTTTAGAGTTTGTATATGCAAAGGATATGGAGGATTTTCTCGAACCAACTCTTGGCCTTTGTAGAGCTCTCCTTTTGCGTTCTGTCAGTTGTAGAAAGGGATTCACCTACTCAAAAGAACCAGTTCTTCTGGGTGATGGTACTCCCGAGCAAAATGTTCTTGTTAACCAGCAGGAATGCATAAGAGATATATCCGACTTTGGTAACAATGTTGGCGTCTTATTGGAGTTGAGTGGGTCTTCAGAAGCGAATATTGCCGACATTGCTTCTGAATGTATAGTGTTTTTGGTTATGGCGGCTCCTAGGGAAGGTACCACTGGTCTTCTTACAAACCTTCACAAGGTTAGTTTAATCCTGGAGTCCTGGCGAAGAGGTGGTTGCCTCTTGTTTGTGCAGAGAATGCTGCATGCTCTTGGTTATGCTTGTAGACAGTACTTGGCCCATGCAATGATATTATCACTATCCACATCTGAAATTTCACGAATCGAGGCTATCATTTCTGAGATCAAGAGCTCAGGCACGTCGCGACTAGCTAATGATGCAGTGCTTGTGGCGATGGAGTTGCAACGACTTCATCGTTGTATTTAA 3495 40.11 MNQYHIYEAIGRGKYSTVYKGRKKKTIEYSAIKSVDKSQKNKILQEVRILHSLDHPNVLKFYSWYETSAHLWLVLEYCVGGDLMSILRQDGKLPEDSIHDIASDLVRGLQYLHSKGIIYCDLKPSNILLDENGHIKLCDFELARKLSEISKTNSSVPQTKRGTPCYMAPELFKDDGVHSYSSDLWALGCVLYECFVGRPPFMGREFTQLVKSILSDPTPILPGSPSRPFVNLINSLLVKDPAERIQWPELCGHAFWRTKITQVSLPPQPAFANMIDQYSKPCLSERNGEKLIQNRTPPKYREKDVKGTLRQNENSAFGSSKNETLVKGTPGSQKTQSKVSSKVVEDKKLKETPSASKGVNLLRLSRIAKLNLQRENDKENYRRPIPSNSENDSEVEIKNTDMELDFNENVEDEAHEEPDESDNLNCNQEDKSSNQNPLGKEDAQNMGGDLSDYSPAVNNNASDLSNRHNQESPLVPTEVVATSPSASPQLKNQRTKEGSTYAVDPNSLKSSNNMSEFFWHQSDLSVKPVMPGRKAVPDVNHTLPFEGLQTSDFVKMPKEQQDALGSKIIAILSGNTSIGEKQNMIRYLEMLSNNADAANILTNGSVMLMLVKMLKQSKVLQLRVQLTSLIGLLIRHSTFIANDLANSGLLVSLTDGLRDKQEKVRRFSMAALGELLFYISTQEEHNNSNANPPESPLKDIRSPSGWQVPNSLISLVSSILRKGEDDITQLYALRTIENICSQGAIWASRFMSQDVINNLCYIYRASGKSENMRLTAGSCLVRLIRFNPSSIQSGRDDFQITLLRVIESITEEFSVILENPDIFVHKILPSLAVLYKGNKDGDARFLCLKILFDVMVIFLNEPSLDGQRLEDLKLIANLHFLPLYPALIEDDDPIPMYAQKLLVMLIECNYIKISDILHLKTISQCFEFLLGDLSNANVSNVKLCLALASAPEMESRILSQLKVVRRIGILLEFVYAKDMEDFLEPTLGLCRALLLRSVSCRKGFTYSKEPVLLGDGTPEQNVLVNQQECIRDISDFGNNVGVLLELSGSSEANIADIASECIVFLVMAAPREGTTGLLTNLHKVSLILESWRRGGCLLFVQRMLHALGYACRQYLAHAMILSLSTSEISRIEAIISEIKSSGTSRLANDAVLVAMELQRLHRCI 1164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38492822 38499816 - Maker00031997 Lcy11g1459 647360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1459 1164 MobiDBLite consensus disorder prediction 411 507 - -
Lcy11g1459 1164 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 794 1163 IPR044591 GO:0000911(InterPro)|GO:0000914(InterPro)|GO:0008017(InterPro)
Lcy11g1459 1164 MobiDBLite consensus disorder prediction 295 309 - -
Lcy11g1459 1164 Gene3D Transferase(Phosphotransferase) domain 1 1 329 - -
Lcy11g1459 1164 CDD STKc_ULK4 3 256 - -
Lcy11g1459 1164 MobiDBLite consensus disorder prediction 378 397 - -
Lcy11g1459 1164 SUPERFAMILY ARM repeat 567 797 IPR016024 -
Lcy11g1459 1164 FunFam Maternal embryonic leucine zipper kinase 1 285 - -
Lcy11g1459 1164 MobiDBLite consensus disorder prediction 427 441 - -
Lcy11g1459 1164 Pfam Protein kinase domain 4 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1459 1164 SMART serkin_6 4 256 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1459 1164 ProSiteProfiles Protein kinase domain profile. 4 256 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1459 1164 MobiDBLite consensus disorder prediction 451 507 - -
Lcy11g1459 1164 Gene3D - 565 816 IPR011989 -
Lcy11g1459 1164 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
Lcy11g1459 1164 FunFam Aurora kinase A 1 81 - -
Lcy11g1459 1164 SUPERFAMILY Protein kinase-like (PK-like) 1 285 IPR011009 -
Lcy11g1459 1164 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1459 1164 MobiDBLite consensus disorder prediction 310 339 - -
Lcy11g1459 1164 MobiDBLite consensus disorder prediction 286 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1459 K28092 - - csv:101217007 1422.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1459 Lcy-Chr11:38492822 Lcy4g1024 Lcy-Chr4:18367462 6.29E-37 dispersed
Lcy11g1459 Lcy-Chr11:38492822 Lcy9g0888 Lcy-Chr9:29709833 9.75E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g370 . . . . . Bpe14g01152 . . . . . Cma14g01648 . Car14g01481 . . Cpe03g01392 Bhi01g00926 . . . . . Lcy11g1459 . . . . . . . . . Cone7ag0183 Cone4ag0178 Lsi05g01496 . . Cme06g00683 Blo02g00576 . . . . . . . . . Cmo14g01692 . . . . . . . . . . . . . Cla05g00610 . . . . . . . Csa03g01408 Chy06g00651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009196 1 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65456 None None None None Lcy PK