Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1461 ATGGCGGCTGCACAAAATGTTGAGTTAGAGGCAGCGAAGTTTCTGCACAAACTCATCCAGGAATCTAGAGACGAGCCAGCAAAATTGGCTACAAAACTCTACGTGATACTACAACACATGAAATCAAGTGGGAAAGAACATTCCATGCCATATCAAGTAATATCAAGGGCCATGGAGACTGTCATCAATCAACATGGTCTTGATATTGAAGCTTTGAGGGCATCACGCCTTCCTCTGACTGGTGGAACTCAGATGGGTGATTCTTCAACTGCGCAATATGCAGGTTCTTCCAGTGTTGTCGGTTCTGCTAAAGATTCCAAAATGGGTATATCTGGAAGTGACATGTCCAAAAGTGGCGCACTTGCTTCAAGCAAGCCACCTGTTGGCCCAAGTAGTACAGATCATGATTATTATCAAGGATCTGCAACTCATCGGAGTGGTCAATCTTTTGATCAAGAAAGTCCGTCTAGTTTGGATTCGAGGTCTGCCAACTCACAGTCACAAGAGAAGCATGATTCAGTGAATTGGGACAAACAATTAAATGATAAGGATGGGAAGAAGGGCACCAAGAAAAGGAAGAAGGTGGATACATCAGTTGTGGAACCATCTAGTGACAATACTCATCAACTTGATACACGCAATTCATTGGTTAATCCTAGGAATGTAAAGACAAACAGGGTTGAACCACCGACATATCTAGTTAAGGGAGGCAATATTGAACAGGCAAAGCATGGATTAACAAAAGCTGCTGAAAAGCCTATCGACCCTCAAATGTATTCTGTGAACCGAGGTGATGGGACATCTGCCTCTGGTGAAAAGGTTTTGGAGAGTGAACTACCTATATCTAGCACATCATCTGTTGATGCTACGAAAATGATTCAGGGTGCATGGCGGAACAATGGACCAGAAATGAGTATGTTACGGAACCCAGTCTCTAGAGAAGCAGGAAAGCTTCCTGTTTCTCAGGTTCCTACCTCTTCCCAATCTCGTTTGCCTTTCAAGGAACAACAATTGAAGCAACTTAGGGCTCAGTGCCTTGTGTTTTTAGCATTCAGAAATGGTTTAATGCCAAAGAAACTGCATCTTGAAATTGCCCTCGGGAATAATTTTCCTAAAGAAGAGGGGCTTCGCAAAGATGTTGATCCTAGAGGTATTGCTCAATCTTTTAATGAGGCGAGAAGTACCACTGAAGTCATGATGCCATCAGGAAAGTTGGATGCTGCAAGGGAAACAGGTACGGTGATCCCAGGTGCCATATCTGCTGGAAGAATCTATGAGGCTGACTCCATGAAGGAAGTAGATAACAGGAGGGTAGAGGATAAAAAGGGTACACCTTCTGATTATTCTGTTCAAGCAGAAGGAAGAAAGCCAGAGGCTGAACTAATGCGAGAAAAAGCAATTTCTCAAACAGGCTTGAGCACTGCATTGCATCCGCCTGACTTTTCAGGTGCAAGGGGGGGTTTAACTGCAAATAATCCTGTTGAGGATTTGGAGAATAGCAATCTTCTGATTGGACAGACCAATCAAGCCACTGCTGCCGTGGGTATGAGTAAGCCTCTAAACCCTGAAACAGTTAGCTGGACAGGAATTGGCAGCACAAATGAGGTTTCTAGGGGAAGTCTACCAGCCTTCGCTAGTCAGCATGAGCTGGTAGTTGATAGAAAGAATGACGTGTCTGCTCAGTTGCACGTTGTTCGAAACAATAGTGGTTTAGGAAGTCAACATATTGATAGCCAGTCTTCTTTTTCAATGGGAGAGCGATGGAAACCTATCTCTGGGACTTATGATCAATACCACACTATAATGCCTTCCAGAGATGCTAGTGTGATCCCAAATCTTGCATCTCATGATGATATGAATGTGCCAGAATCTGAATCCAGATGCATCACAGAAGTGCACAAAGTGGCATCTGTTGATGAAGGGAAAAATGGCAGCCTAAATGCTATGGAACAAGACGATGATGGTAAGTCAGTGCCATCTGATTTGCCGATGTCTCCAAAGTACACCATGTCAGAGAAATGGGTAATGGATCGGCAGAAAAAGAAACTCCTAACTGAGCAAAATTGGTTACTGAAACAACAAAAAACTGAGAAACATATTGCCACTTGTTTTGATAAGTTAAAGAAGCACAAATCTATTCATGTTTTGATGCTGAATTGGCCTGTAGTTAATGCCTCTGGGATATTGCTGGAACTTGCAGATACTGTCAGCTCGTCTGAAGATATATCTGCAAAAACTAGAAGTGTAATAGAATTGAAAAAACTTCAACTCTTGCAGCTTCAGCGCCGCCTCAGGAATGATTTTCTTAATGATTTCTTCAAACCAATTTCAACTGAGATGGACCGCTTGAAATCTTTCAAGAAGCACAAACATGGTAGGAGGATTAAACAACTAGAAAAATTTGAGCAGAGAATGAAGGAGGAGAGGCAAAAGAGAATACGGGAGAGGCAAAAGGAATTCTTTGGTGAGATTGAAGTTCACAAGGAAAAACTTGATGACGTATTTAAAGTTAAGAGAGAGAGGTGGAAGGGTTTCAATAAGTATGTCAAGGAGTTCCACAAGAGGAAGGAACGAATTCATCGTGAGAAGATTGATAGAATCCAGCGTGAGAAGATCAATCTTTTGAAGATCAACGATGTAGAGGGGTATCTGCGAATGGTGCAGGATGCAAAATCGGATCGTGTTAAGCAACTTCTCAAGGAGACTGAGAAATATCTTCAAAAGCTTGGATCCAAGCTACAGGAGGCAAAGTCCATGGCAAGTCGGTTTGAGCATGATATGGACGATGGAGGAGGTGTGAATGTTGCTGAAAAAAGTGAAACTGCGATTGAGAATGAAGATGAAAGCGATCAGGCGAAGGCAAGTGGTTTTCTCTCACTTTCTTGCATTAGTTTTTTTTCATTCACTGATTACATCGACTTTCTTCTTACAGCATTATTTGGAAATGTTAAGGAAAGCATAGCTGAGCAGCCGGCTTGTCTTCAGGGAGGAAAGTTGAGGGAGTATCAGATGAATGGCCTTAGGTGGCTCGTTTCATTATACAACAACCATTTGAATGGAATTCTTGCTGATGAAATGGGGCTTGGAAAAACTGTTCAGGTAATTTCCCTAATCTGTTATTTGATGGAGACTAAGAATGACCGAGGTCCCTTTTTGGTGGTTGTGCCGTCATCAGTTTTACCTGGATGGGAGTCAGAGATCAACTTCTGGGCCCCAAGTGTGCTTAAAATTGTTTATTCTGGACCTCCAGAAGAGAGGCGCAAACTATTCAAGGAGAGAATCGTTCATCAGAAATTTAATGTACTTCTGACCACATACGAATATCTGATGAACAAGCATGATAGGCCAAAACTAAGCAAAATTCATTGGCACTATATTATAATTGATGAAGGGCATCGCATAAAGAATGCTTCATGCAAGTTGAATGCTGATCTGAAGCACTATCAGAGTTCTCACAGATTACTCTTAACTGGAACACCGCTACAGCCGAATAGTGCATCTGAGAACAACCTTGAGGAGCTGTGGGCATTACTGAACTTTTTGTTGCCAAATATTTTTAATTCATCGGAGGATTTTTCACAGTGGTTCAACAAACCATTTGAGAGTAATGGTGATAATTCAGCTGACGAAGCCTTGCTTTCTGAAGAGGAGAATCTTTTGATCATAAATCGACTTCACCAAGTTCTTCGCCCGTTTGTTCTTCGGAGGCTTAAACACAAGGAGAATGCAACAAGACCTCCTCTATCATAG 3750 42.13 MAAAQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQHGLDIEALRASRLPLTGGTQMGDSSTAQYAGSSSVVGSAKDSKMGISGSDMSKSGALASSKPPVGPSSTDHDYYQGSATHRSGQSFDQESPSSLDSRSANSQSQEKHDSVNWDKQLNDKDGKKGTKKRKKVDTSVVEPSSDNTHQLDTRNSLVNPRNVKTNRVEPPTYLVKGGNIEQAKHGLTKAAEKPIDPQMYSVNRGDGTSASGEKVLESELPISSTSSVDATKMIQGAWRNNGPEMSMLRNPVSREAGKLPVSQVPTSSQSRLPFKEQQLKQLRAQCLVFLAFRNGLMPKKLHLEIALGNNFPKEEGLRKDVDPRGIAQSFNEARSTTEVMMPSGKLDAARETGTVIPGAISAGRIYEADSMKEVDNRRVEDKKGTPSDYSVQAEGRKPEAELMREKAISQTGLSTALHPPDFSGARGGLTANNPVEDLENSNLLIGQTNQATAAVGMSKPLNPETVSWTGIGSTNEVSRGSLPAFASQHELVVDRKNDVSAQLHVVRNNSGLGSQHIDSQSSFSMGERWKPISGTYDQYHTIMPSRDASVIPNLASHDDMNVPESESRCITEVHKVASVDEGKNGSLNAMEQDDDGKSVPSDLPMSPKYTMSEKWVMDRQKKKLLTEQNWLLKQQKTEKHIATCFDKLKKHKSIHVLMLNWPVVNASGILLELADTVSSSEDISAKTRSVIELKKLQLLQLQRRLRNDFLNDFFKPISTEMDRLKSFKKHKHGRRIKQLEKFEQRMKEERQKRIRERQKEFFGEIEVHKEKLDDVFKVKRERWKGFNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQEAKSMASRFEHDMDDGGGVNVAEKSETAIENEDESDQAKASGFLSLSCISFFSFTDYIDFLLTALFGNVKESIAEQPACLQGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPSVLKIVYSGPPEERRKLFKERIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQPNSASENNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSADEALLSEEENLLIINRLHQVLRPFVLRRLKHKENATRPPLS 1249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38512723 38536429 + Maker00032093 Lcy11g1461 647362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1461 1249 MobiDBLite consensus disorder prediction 171 199 - -
Lcy11g1461 1249 CDD DEXHc_SMARCA2_SMARCA4 996 1238 - -
Lcy11g1461 1249 Coils Coil 798 818 - -
Lcy11g1461 1249 Coils Coil 899 919 - -
Lcy11g1461 1249 SMART QLQ_2 331 366 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy11g1461 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 972 1236 IPR027417 -
Lcy11g1461 1249 SMART ultradead3 995 1195 IPR014001 -
Lcy11g1461 1249 MobiDBLite consensus disorder prediction 200 223 - -
Lcy11g1461 1249 Gene3D - 979 1247 IPR038718 -
Lcy11g1461 1249 Pfam SNF2-related domain 1002 1240 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Lcy11g1461 1249 ProSiteProfiles HSA domain profile. 803 877 IPR014012 -
Lcy11g1461 1249 MobiDBLite consensus disorder prediction 83 223 - -
Lcy11g1461 1249 MobiDBLite consensus disorder prediction 434 457 - -
Lcy11g1461 1249 PANTHER SNF2/RAD54 HELICASE FAMILY 523 1240 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0008094(PANTHER)|GO:0045944(PANTHER)
Lcy11g1461 1249 FunFam Chromatin structure-remodeling complex protein SYD 990 1244 - -
Lcy11g1461 1249 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1011 1178 IPR014001 -
Lcy11g1461 1249 MobiDBLite consensus disorder prediction 641 663 - -
Lcy11g1461 1249 MobiDBLite consensus disorder prediction 83 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1461 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1461 Lcy-Chr11:38512723 Lcy13g0261 Lcy-Chr13:2741865 5.09E-87 dispersed
Lcy11g1461 Lcy-Chr11:38512723 Lcy7g1517 Lcy-Chr7:26891703 1.94E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g371 . . . . . Bpe14g01153 . . . . Cma06g01457 Cma14g01649 Car06g01259 Car14g01483 Sed02g1676 Cpe08g00220 Cpe03g01393 Bhi01g00925 Tan10g0941 Cmetu06g0809 . Hepe05g1489 . Lcy11g1461 . . . . . . . Cone14ag0789 Cone15ag0790 . . Lsi05g01493 . . Cme06g00682 Blo02g00553 . . . . . Bma02g00714 . . Cmo06g01459 Cmo14g01693 . . . . . . . . . . . . . Cla05g00609 Cam05g0669 Cec05g0679 Cco05g0673 Clacu05g0664 Cmu05g0632 Cre05g0702 . Csa03g01407 Chy06g00650 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006639 1 1 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 0 2 1 0 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19132 None None None None Lcy TR