Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1468 ATGGCGATTGAAGAGTGGAAGGAAATTGAAAATGGCGATGGAGATCATTTGGAGAAGCCATTGATGAGAAGAAATGAAGAATTGGAAGAACAAGCTTCAAGGAGTTGTGAAAATGGAAGCATTGGAATGGTTTATCTCAGTACTTTTGTTGCTGTTTGTGGCTCTTTTCAATTTGGATCATGTGTGGGATATTCTGCACCAGCTCAAGCTGCAATAAGGGAAGATCTTAATCTCTCTCTATCTGAGGCAATGAGAATGTCAGCTTGTTTCTGCATTGTAGGATGGATTGCAATCTATTTTTCAAAGGGATCTCTATCATTGGACATTGGGAGGCTACTCACAGGATATGGCATTGGAGTCTTCTCCTATGTGGTCCCAATATTTATAGGCGAAATAGCTCCGAAGAATCTTCGAGGAGGGCTTACTACGCTAAATCAGCTATTGATTGTTACTGGTTCATCGGTCGCCTTCTTACTAGGAACTGTTGTAACATGGAGAACACTTGCTCTCACAGAAGCTGCTGAGATCCAAATTGGGGTGGGATTGATGGTGTTCCAGCAATTTGGAGGGATCAACGGAATAGGTTTCTTTGCCAGTGAAACGTTCGCCTCAGCAAGTCCATCAGCAGGCAAAATTGGAACCATTGCTTATGCTTGTATTCAGGTTCCAATCACTGTGGCTGGTGTAATCTTAATGGACAAATCTGGAAGAAGGCCACTTATTATGGGTCGCGGTTTGCTGCTCGGGTTCGTGCCCGTGCTCGTGGTCTCCGGAGTGTTGATATTTCCAATTAATGTGAAAGGAAGTGCTGGGAGCATAGTGGTGTTGGTGAACTGGTTAGGTGCTTGGATTGTCTCTTTTACCTTCAACTTCTTCATGACCTGGAGTTCTTCTGGGACATTTTTCATTTATTCTTTAGTATCTTTGATGACAATTCTATTTGTGATCAAATTGGTGCCAGAAACCAAAGGAAAAACCCTAGAAGAAATTCAAGCATCCATTGATTCACAAACAAAAGTAGAAATCTTGAATTGA 1035 42.03 MAIEEWKEIENGDGDHLEKPLMRRNEELEEQASRSCENGSIGMVYLSTFVAVCGSFQFGSCVGYSAPAQAAIREDLNLSLSEAMRMSACFCIVGWIAIYFSKGSLSLDIGRLLTGYGIGVFSYVVPIFIGEIAPKNLRGGLTTLNQLLIVTGSSVAFLLGTVVTWRTLALTEAAEIQIGVGLMVFQQFGGINGIGFFASETFASASPSAGKIGTIAYACIQVPITVAGVILMDKSGRRPLIMGRGLLLGFVPVLVVSGVLIFPINVKGSAGSIVVLVNWLGAWIVSFTFNFFMTWSSSGTFFIYSLVSLMTILFVIKLVPETKGKTLEEIQASIDSQTKVEILN 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38603012 38613158 + Maker00031510 Lcy11g1468 647369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1468 344 Pfam Sugar (and other) transporter 164 243 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy11g1468 344 Pfam Sugar (and other) transporter 249 332 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy11g1468 344 Pfam Sugar (and other) transporter 79 162 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy11g1468 344 PANTHER - 248 332 IPR050549 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Lcy11g1468 344 Gene3D MFS general substrate transporter like domains 38 172 IPR036259 -
Lcy11g1468 344 Gene3D MFS general substrate transporter like domains 173 338 IPR036259 -
Lcy11g1468 344 SUPERFAMILY MFS general substrate transporter 48 331 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1468 K03444 - - vvi:132252501 248.054
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1468 Lcy-Chr11:38603012 Lcy12g2220 Lcy-Chr12:43417352 8.80E-97 dispersed
Lcy11g1468 Lcy-Chr11:38603012 Lcy13g0217 Lcy-Chr13:2236348 4.25E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g393 . . . Bda08g00350 . . . . . . . . . . . . . Bhi01g00899 . . . Hepe05g1199 . Lcy11g1468 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000288 3 7 2 3 2 5 5 5 5 5 4 5 4 4 5 5 5 5 4 5 4 5 4 5 5 4 3 4 6 19 147