Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1476 ATGGCAGGGCTGATTGGAGGGGGAAGAATGTCTTCCTTAATGCATGGATCACTGCTGCAGACTATAGCAGATTGTGAACAAGGATTGTTGAGGAGGGGGAAGTACCATGTGGGTCACTCCCATCTTCTCAAAGAAAAACATTCATCTTTGAGGGCAAACAGGGGTGGTAGAAGTAAAGGTATTTGCTGCCAAGACTTGCATATCAGTGGCCCAAAGTCTGAGAGACATGAGCCGCCCAATCGCCACGGTTCGAGAGCCGACGCGGTCCTTAGCCCAGTAATACCTACTACCAATAAGAGAGTATTTACTTTTGGAAAAGGAAGGAGTGAGGGTAACAAGAGCATGAAGTCCTTGTTGGGAGGGAAGGGAGCAAACCTCGCAGAGATGGCGAGTATTGGATTGTCCGTTCCGCCTGGACTCACCATCTCAACTGAAGCATGCCAAGAGTACCAGCAAAATGGAAATAGATTACCAGATGGCTTGTGGGAAGAGATACTGGAAGGCCTGGAAAGTGTTGAAAAGGACATGGGAGCTGTTCTTGGAGATCCTTCGAAGCCTCTCCTTCTCTCCGTTCGGTCCGGTGCTGCTATCTCAATGCCTGGAATGATGGACACTGTCCTTAACCTTGGATTAAATGATGAAGTGGTTGCTGGCTTGGCTGCAAAAAGTGGAGAGCGCTTTGCTTATGACTCTTATAGGCGCTTTCTAGACATGTTTGGAAATGTTGTGATGGGCATTTCACATTCTTTGTTCGAGGAAAAGTTGGAACAGTTGAAAATTGCAAGAGGAAAGGCACTCGATACTGACCTAACCGCCTCTGATCTTAAGGAGCTCGTGCAACAGTACAAGGATACGTACATCGAAGCTAAGGGCGAAAAGTTTCCTTCAGATCCAAAGCAACAGTTGCAGTTAGCTGTCAAAGCAGTTTTTGATTCTTGGGATAGCCCGAGGGCGAACAAGTATCGAAGCATCAATCAAATTACCGGGTTGAAGGGAACTGCCGTGAACATTCAATCCATGGTGTTTGGAAACATGGGACAGACTTCTGGGACAGGAGTATTGTTCACTAGAAATCCAAGTACTGGTGAAAAGAAGCTGTATGGAGAGTTCCTCATCAATGCTCAGGGTGAAGATGTAGTCGCCGGGATTCGGACACCCGAAGACTTGGACACCATGAAAGATTGCATGCCTGAAGCTTACAAAGAGCTGGTTGAGAACTGTGAAATTTTAGAGAGGCATTACAAAGACATGATGGATATTGAGTTCACAGTCCAAGAAAATAGGCTATGGATGTTGCAATGTCGTTCTGGAAAACGTACAGGTAAAGGTGCTGTGAAGATAGCTGTAGATTTGGTGAATGAAGGACTTGTCGACACTCGAACTGCGATTAAGATGGTTGAGCCGCAACATCTCGACCAACTTCTTCATCCTCAGGCATGCTTTTCTTTGTTCTTCCATTTAGCAAAGCTAGAATTTGAAGATCCCTCTGCTTACAAAGACCAAGTAGTTGCAACTGGCTTGCCTGCATCTCCTGGTGCCGCAGTGGGCCAGATAGTTTTCAGTGCCGATGACGCCGAAGCCTGGCATGCTCAGGGGAAGAGTGTCATCTTGGTAAGGGCAGAAACCAGCCCAGAGGATGTTGGTGGTATGCATGCAGCTACAGGTATTTTGACAGCTAGAGGTGGAATGACTTCTCATGCTGCTGTCGTTGCACGTGGATGGGGAAAATGTTGCGTCTCTGGTTGCTCGGATATCCGAGTCAACGACTCGGAGAAGGTTCTTGTCATTGGAGATTTGGTGATCAATGAAGGTGACTGGATATCCCTTAATGGCTCTACAGGTGAAGTGATATTGGGCAAGCAGCCACTCTCTCCACCAGCTTTAAGTGGGGATTTGGAGATCTTTATGTCTTGGGCTGATCAATTACGCCGTCTCAAGGTAATGGCCAATGCCGATACTCCGGAAGACGCTCTCACAGCTCGAAACAACGGCGCCCAAGGGATCGGCTTGTGCAGAACAGAGCATATGTTCTTTGCATCAGATGAGAGAATCAGAGCTGTAAGAAAGATGATAATGGCGGTTACAGTCGAACAAAGAAAGGCGGCTTTGGACTTGCTACTACCTTACCAAAGATCCGACTTTGAGGGAATTTTCCGGGCGATGGATGGTCTTCCAGTGACTATTAGACTGTTGGACCCTCCACTTCATGAATTCCTTCCAGAAGGCGACCTGGAAGAGATTGTCAAAGGACTAACTGCAGAGACTGGAATGAGTGAAGATGAAGTGTTCTCTAGAATAGAGAAACTCTCAGAAGTTAACCCGATGCTCGGTTTTCGCGGTTGCAGGCTCGGGATATCATACCCGGAGCTGACGGAAATGCAAGCTCGTGCAATCTTTCAGGCTGCTATCTCAATGAGCAGTCAGGGAATTAAAGTGTTACCTGAGATAATGGTTCCATTGGTTGGAACACCACAGGAACTTGGACATCAAGTCAGCTCGATTCGCCGCGTTGCCGAGAAGGTGTTTGCAGAGATGGGTTCCTCCTTAAATTACAAAGTGGGAACCATGATTGAAATTCCTAGAGCTGCTCTGGTTGCTGATGAGATTGCAAAGGAAGCAGAATTCTTCTCATTTGGGACCAATGATCTTACACAAATGACTTTTGGATACAGTAGAGATGATGTGGGCAAGTTTCTTCCTATTTATATATCCAAAGGAATTCTGCAAAATGACCCTTTTGAGGTGCTTGACCAGAAAGGAGTTGGGCAGCTGATCAAGCTGGCTACAGAAAAAGGGAGGGCAGCCAGGCCAAGTTTGAAGGTTGGAATTTGTGGAGAACATGGTGGAGAGCCTTCATCTGTTGCATTCTTTGCAGAGGCTGGGCTTGACTATGTTTCCTGTTCTCCTTTCAGAGTTCCAGTTGCAAGATTGGCTGCAGCCCAAGTTGCTGTTTAA 2955 46.87 MAGLIGGGRMSSLMHGSLLQTIADCEQGLLRRGKYHVGHSHLLKEKHSSLRANRGGRSKGICCQDLHISGPKSERHEPPNRHGSRADAVLSPVIPTTNKRVFTFGKGRSEGNKSMKSLLGGKGANLAEMASIGLSVPPGLTISTEACQEYQQNGNRLPDGLWEEILEGLESVEKDMGAVLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVVAGLAAKSGERFAYDSYRRFLDMFGNVVMGISHSLFEEKLEQLKIARGKALDTDLTASDLKELVQQYKDTYIEAKGEKFPSDPKQQLQLAVKAVFDSWDSPRANKYRSINQITGLKGTAVNIQSMVFGNMGQTSGTGVLFTRNPSTGEKKLYGEFLINAQGEDVVAGIRTPEDLDTMKDCMPEAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKGAVKIAVDLVNEGLVDTRTAIKMVEPQHLDQLLHPQACFSLFFHLAKLEFEDPSAYKDQVVATGLPASPGAAVGQIVFSADDAEAWHAQGKSVILVRAETSPEDVGGMHAATGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVNDSEKVLVIGDLVINEGDWISLNGSTGEVILGKQPLSPPALSGDLEIFMSWADQLRRLKVMANADTPEDALTARNNGAQGIGLCRTEHMFFASDERIRAVRKMIMAVTVEQRKAALDLLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEEIVKGLTAETGMSEDEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQARAIFQAAISMSSQGIKVLPEIMVPLVGTPQELGHQVSSIRRVAEKVFAEMGSSLNYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPIYISKGILQNDPFEVLDQKGVGQLIKLATEKGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPVARLAAAQVAV 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38687538 38694556 - Maker00031334 Lcy11g1476 647377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1476 984 PIRSF PPDK 97 984 IPR010121 GO:0006090(InterPro)|GO:0050242(InterPro)
Lcy11g1476 984 FunFam Pyruvate, phosphate dikinase, chloroplastic 644 984 - -
Lcy11g1476 984 Gene3D - 101 341 IPR013815 GO:0005524(InterPro)
Lcy11g1476 984 Gene3D Phosphohistidine domain 495 620 - -
Lcy11g1476 984 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 99 477 - -
Lcy11g1476 984 Pfam PEP-utilising enzyme, PEP-binding domain 629 983 IPR000121 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy11g1476 984 FunFam Pyruvate, phosphate dikinase, chloroplastic 342 439 - -
Lcy11g1476 984 FunFam Pyruvate, phosphate dikinase, chloroplastic 494 620 - -
Lcy11g1476 984 PANTHER PHOSPHOENOLPYRUVATE DIKINASE-RELATED 96 984 IPR010121 GO:0006090(InterPro)|GO:0050242(InterPro)
Lcy11g1476 984 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 158 390 IPR002192 GO:0005524(InterPro)|GO:0016301(InterPro)|GO:0016310(InterPro)
Lcy11g1476 984 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 399 453 IPR002192 GO:0005524(InterPro)|GO:0016301(InterPro)|GO:0016310(InterPro)
Lcy11g1476 984 Gene3D - 342 439 - -
Lcy11g1476 984 ProSitePatterns PEP-utilizing enzymes signature 2. 874 892 IPR023151 GO:0016772(InterPro)
Lcy11g1476 984 Pfam PEP-utilising enzyme, mobile domain 533 614 IPR008279 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy11g1476 984 Gene3D Pyruvate Phosphate Dikinase, domain 2 440 641 - -
Lcy11g1476 984 SUPERFAMILY Phosphohistidine domain 498 622 IPR036637 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy11g1476 984 ProSitePatterns PEP-utilizing enzymes phosphorylation site signature. 561 572 IPR018274 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy11g1476 984 NCBIfam pyruvate, phosphate dikinase 98 984 IPR010121 GO:0006090(InterPro)|GO:0050242(InterPro)
Lcy11g1476 984 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 630 983 IPR015813 GO:0003824(InterPro)
Lcy11g1476 984 MobiDBLite consensus disorder prediction 69 83 - -
Lcy11g1476 984 Coils Coil 272 292 - -
Lcy11g1476 984 Gene3D - 210 294 - -
Lcy11g1476 984 MobiDBLite consensus disorder prediction 66 86 - -
Lcy11g1476 984 Gene3D - 644 984 IPR040442 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1476 K01006 - - csv:101214608 1803.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g397 . . . . . Bpe14g01163 . . . . . Cma14g01661 Car06g01249 Car14g01494 . Cpe08g00228 Cpe03g01402 Bhi01g00890 . . . Hepe05g1501 . Lcy11g1476 . . . . . . . . . . . Lsi05g01477 . . Cme06g00668 . . . . . Bpe13g00635 . Bma06g01529 . . Cmo14g01705 . . . . . . . . . . . . . Cla05g00597 Cam05g0657 Cec05g0664 Cco05g0661 Clacu05g0650 Cmu05g0619 Cre05g0688 . Csa03g01393 Chy06g00636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010599 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 32