Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1482 ATGGGTTGTGTTCTTGGTAAGTGTTGCACTTCCAGCAGTCGCTACGCGCCGTCTTCTGACGGCGATATGACGCAATTTTGTGATGCTCCGCCGTATAGTTTACAAGGGAAACATATACTAACGGGAAGGTCATTGGAGTCTGTTCGTGTGCCTTCTCACAACTTCCATATGGAGTACTCGCTCCTGACTCAGCGCGGCTACTACCCTGATTCCCCTGATAAAGAAAACCAAGATAGCTTCTGTGTTAGTACACAAATTCGAGGTGACCCGAATATCCATTTCTTTGGTGTTTTTGATGGACACGGTCAATTCGGATCGCAGTGTTCAAATTTCGTTAAGGAGAGGGTTGTGCAAATACTATGTAATGATCCAACATTGTTGGAAGATCCTGTTAAAGCTTATAATTCGGCATTCTTGACCACAAATGAGGAATTGCATAATAGCGAGATTGATGATTCCATGAGTGGCACAACAGCTATTACTGTTCTTGTTGTTGGGAATACTCTTTATGTTGCGAATGTGGGTGATTCAAGGGCAGTCATAGCTGTTAAAGATGGGAATCGGATTGTTGCTGAGGATATGTCCTATGATCAAACACCATTTAGGAAGGATGAGTGCGAGCGAGTAAAGCTCGCCGGGGCTAGGGTGTTGACAATTGATCAAATTGAAGGGCTTAAGGATCCGGATATTCAAGTATGGGGTGATGAGCAGAGCGAGGGAAATGATCCTCCTCGGTTGTGGTTTCCTAATAGCTTGTTTCCTGGCACTGCATTTACGCGGAGTGTGGGAGACAGTACAGCGGAGAAGATTGGTGTCACTGCTGTCCCTGAGGTTTCAGTAGTTCAGCTGAATCAAAACCATCTTTTCTTTGTCGTTGCTAGCGATGGAGTGTTCGAGTTCCTTACAAGTCAAGCTGTAGTTGATATGGCTGCAAGGTACTCCGATCCACGAGATGCATGCTCTGCTATTGCCGGAGAGTCATACAAGCTATGGTTGGAGCATGAAAACCGGACAGATGATATAACAATCATCATCGTTCACATCAAAGGCCTCTCTAATTCAGGTGTTGTTGCAACTGCTGGGCTGAACGGGCTTCGCATAAGGCATACAAATTCTGAGCGGGGAGCTTCTGAGATATCAGGCTTCACTGGAAGTTCAGAAGCCTTTCGCTCCATCAGAAGTGATTTCTCAGATCTGCAAATCTCTCAGCATGTGGGTTTGATGAACAGGAGCACAGCAATTGTTGTTCCATCTCCCACGCAGCACCGGCCATTGGAAGTGTGTATTTCTTGGAAACTTCATATTATATCCATGTGTCTGGTAACAGGAAGTGGGCTAATGGGGGGTATGCTTTCCCCTCGCTGCCGAAAAATTTGCTTGTTTCACTCGTTTCACTGGTCACGAAGTTCTCTTACTGTCAACGTTGCTGGTAACAATCCTTCTAACCACAAGAAGGGGCAGTATGAGAAACCAATGATGTTTTCCATTGAACGGAATTCGGAGAGAAGGAAGTTGACACGGTGGTGGTGGTGGTTTGGTTTCTTAGCTTCCTCCATGTACGCTCACTCTTAA 1572 45.67 MGCVLGKCCTSSSRYAPSSDGDMTQFCDAPPYSLQGKHILTGRSLESVRVPSHNFHMEYSLLTQRGYYPDSPDKENQDSFCVSTQIRGDPNIHFFGVFDGHGQFGSQCSNFVKERVVQILCNDPTLLEDPVKAYNSAFLTTNEELHNSEIDDSMSGTTAITVLVVGNTLYVANVGDSRAVIAVKDGNRIVAEDMSYDQTPFRKDECERVKLAGARVLTIDQIEGLKDPDIQVWGDEQSEGNDPPRLWFPNSLFPGTAFTRSVGDSTAEKIGVTAVPEVSVVQLNQNHLFFVVASDGVFEFLTSQAVVDMAARYSDPRDACSAIAGESYKLWLEHENRTDDITIIIVHIKGLSNSGVVATAGLNGLRIRHTNSERGASEISGFTGSSEAFRSIRSDFSDLQISQHVGLMNRSTAIVVPSPTQHRPLEVCISWKLHIISMCLVTGSGLMGGMLSPRCRKICLFHSFHWSRSSLTVNVAGNNPSNHKKGQYEKPMMFSIERNSERRKLTRWWWWFGFLASSMYAHS 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38749165 38752803 - Maker00031336 Lcy11g1482 647383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1482 523 ProSiteProfiles PPM-type phosphatase domain profile. 58 348 IPR001932 -
Lcy11g1482 523 ProSitePatterns PPM-type phosphatase domain signature. 94 102 IPR000222 GO:0043169(InterPro)
Lcy11g1482 523 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 53 350 - -
Lcy11g1482 523 CDD PP2Cc 74 348 IPR001932 -
Lcy11g1482 523 SUPERFAMILY PP2C-like 46 350 IPR036457 -
Lcy11g1482 523 SMART PP2C_4 54 346 IPR001932 -
Lcy11g1482 523 Gene3D - 47 350 IPR036457 -
Lcy11g1482 523 PANTHER PROTEIN PHOSPHATASE 59 347 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy11g1482 523 Pfam Protein phosphatase 2C 81 323 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1482 Lcy-Chr11:38749165 Lcy2g0846 Lcy-Chr2:7639306 3.59E-128 dispersed
Lcy11g1482 Lcy-Chr11:38749165 Lcy13g0226 Lcy-Chr13:2315551 1.00E-195 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1482 - - - 0.0