Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1511 ATGGCCTCAGCCTCAAATAATATTCTTCCAATTACGCCCACTGCCGCCGTCTCCGCCCGCTGCTCCTGCCTTCCACCACCGCCAATGGACCCTAATCCAGCTCGCCAGGTTTTGGGAGAGATGGTGGGCAGTTTTTTGTTGATGATTTGCGTCAGTGGGGTGGCGGCCAACGGCCAGCTGATGGGCGGTCAGGTGGGTCTATTGGACTACGCCGCCGCGGCCGGCTTCACGGTGGCCGTTTTGACGTTCTGCTTTGCTCCGATTTCCGGTGCTCATTTCAATCCTGCCATCACTCTTGCCTCTGCCATTTTTGGTCACTTTCCATGGTCCAGGGTAATGGCTTACACAGTGGCGCAAACGACAGGTTGTGTAATGGCAACATATGCAGGAATGTTTGTTTACGGCATAAAAGCAGAACAGTTGACCACTCGCCCATTTCATGGCACCATTTCTGCCTTCTTCGTCGAGCTTCTTGCGACCTTCATTCTCATGTTCCTCGTTTCTTCTTTGGCCTATGAATCCCAATCGGTGGGTCAGGTATCGGGATTTGTTATTGGAATGGCCATTGGGCTTGCTGTGTTCATCACTGGGCCCATTTCAGGTGGGTCAATGAACCCAGCAAGATCATTAGGGCCGGCAATTGTTTCATGGGCTTTCGATGACATATGGATATATATTACAGCTCCGGTGATCGGAGCAGTTTCCGGTGCTTTCTTGAGCGGCATCCTCCGCCGTCCAATTTTCCCTCCTCCCCTTCCAGCACCAGACTTTTTCATCACTCCTCCTCAGCCAATGTATATCTAA 804 51.99 MASASNNILPITPTAAVSARCSCLPPPPMDPNPARQVLGEMVGSFLLMICVSGVAANGQLMGGQVGLLDYAAAAGFTVAVLTFCFAPISGAHFNPAITLASAIFGHFPWSRVMAYTVAQTTGCVMATYAGMFVYGIKAEQLTTRPFHGTISAFFVELLATFILMFLVSSLAYESQSVGQVSGFVIGMAIGLAVFITGPISGGSMNPARSLGPAIVSWAFDDIWIYITAPVIGAVSGAFLSGILRRPIFPPPLPAPDFFITPPQPMYI 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38998709 39000662 + Maker00032090 Lcy11g1511 647412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1511 267 PRINTS Major intrinsic protein family signature 155 173 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy11g1511 267 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy11g1511 267 PRINTS Major intrinsic protein family signature 186 208 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy11g1511 267 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy11g1511 267 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy11g1511 267 PRINTS Major intrinsic protein family signature 223 243 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy11g1511 267 ProSitePatterns MIP family signature. 92 100 IPR022357 -
Lcy11g1511 267 Gene3D Glycerol uptake facilitator protein. 29 245 IPR023271 -
Lcy11g1511 267 PANTHER AQUAPORIN NIP2-1 30 242 IPR034294 -
Lcy11g1511 267 Pfam Major intrinsic protein 34 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy11g1511 267 SUPERFAMILY Aquaporin-like 32 253 IPR023271 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1511 K09874 - - csv:101203206 345.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1511 Lcy-Chr11:38998709 Lcy6g0757 Lcy-Chr6:7452859 4.11E-46 dispersed
Lcy11g1511 Lcy-Chr11:38998709 Lcy12g1446 Lcy-Chr12:32924441 9.35E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g437 . . . . . . . Bma05g00938 . . . Cma14g01679 . Car14g01513 . . Cpe03g01417 Bhi01g00854 . . . . . Lcy11g1511 . . . . . . . . . . Cone4ag0210 Lsi05g01452 . . Cme06g00639 . . . . Bpe05g00748 . . . . . Cmo14g01724 . . . . . . . . . . . . . Cla05g00575 Cam05g0630 Cec05g0641 Cco05g0635 Clacu05g0626 Cmu05g0594 Cre05g0662 . Csa03g01364 Chy06g00608 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010672 2 2 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 32