Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1521 ATGGGCCCATGGACCTTTTTGGGCTGTATAACAGCAAAGCAGAAAGCCCAAAAGTATGTTGGGCCGTCGTGTCTTTGTCCGGGCTTGCAAGGTTGGGAAAGTTGTGGTCTGATTTTCAGCTCAAGAAAATCCGGCATTCTGAACCCTCCTAAACCCCTACACCACCGGCGGAGATCTTCAAAAATGGGGAAGAAGAAGCATAAGCGGCCGGAATCGGAATCGGAGGCACTTGACAGAGACGACTTCGGAGCTCAGAATGAAGCTGAGCTCGTCAATGGATGCTCTCCTGAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAAGTGGAGAATGATGAGATTGAGGGGGAGAAGAGGAAACCGATTTCCAAACCTACTGTGAGCATTGCGGTATCCGGTTCCATCATTGACAACGCTCAATCCCTTGAGCTTGCCACCAGATTGGCTGGTCAAATTGCTCGTGCAGCAACCATATTCCGAATTGACGAGGAAGCTAGTTTTTGCTTGTATCAGGTGGTGGTATTCGACAGTGGAAGGAACTCAGTGACTGGCTCGGATGTTGCGGCAGCGAACAATTCTGATGAGGATGAAAGTGGCGCTGCTTTTCTTATAAGGATCTTGAAGTATCTTGAGACTCCACAATACTTGAGAAAAGCTCTTTTCCCAAAGCACAACAATTTAAGATTTGTGGGGATGTTGCCCCCGCTTGATGCTCCTCACCATTTGCGCAAGCATGAATGGGGTCCCTATCGAGAAGGTGTTACCCTCACACTGAAAGAAAGAGCTCCCGGTGCTAGAGGAACACCAGTTGATGTTGGTCTGAGTAAGAACGTGGTAGTTGATGAAATACTTGAACCTGGAGTAAGAGTAACAGTAGCTATGGGAACAGATCGCAATTTACTTGCTGATCTACCCCACCAGGTCGTCTCATCCTCAAGGCCTGTGGAAGAAGGACTCTACTGGGGTTATAGAGTGCGTTATGCTTCTTCTTTGAGTGCAGTTTTTAAGGAGAGTTCATACGAGGGTGGTTATGATCACTTGATTGGCACCTCAGAGCACGGAACGGTAGTTAAGTCCTCAGAACTGACACTACCTTCTTTCAGGCACCTTTTAATTGCCTTTGGTGGACTTGCCGGTTTGGAAGAGAGCATTGAGGAAGATAACAACTTCAAGAGTAAAAATGCTTGTGAGATCTTTTCTTCATACTTAAATACATGTCCGCTACAAGGAAGCCGAACGATTCGAACAGAGGAAGCAATATTCATCTCCCTCCAGTATTTCCAAGAACCAATAAGCAGGGCATTGCAGAGTTGA 1311 46.53 MGPWTFLGCITAKQKAQKYVGPSCLCPGLQGWESCGLIFSSRKSGILNPPKPLHHRRRSSKMGKKKHKRPESESEALDRDDFGAQNEAELVNGCSPEKKKKKKKKKKVENDEIEGEKRKPISKPTVSIAVSGSIIDNAQSLELATRLAGQIARAATIFRIDEEASFCLYQVVVFDSGRNSVTGSDVAAANNSDEDESGAAFLIRILKYLETPQYLRKALFPKHNNLRFVGMLPPLDAPHHLRKHEWGPYREGVTLTLKERAPGARGTPVDVGLSKNVVVDEILEPGVRVTVAMGTDRNLLADLPHQVVSSSRPVEEGLYWGYRVRYASSLSAVFKESSYEGGYDHLIGTSEHGTVVKSSELTLPSFRHLLIAFGGLAGLEESIEEDNNFKSKNACEIFSSYLNTCPLQGSRTIRTEEAIFISLQYFQEPISRALQS 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39110478 39116245 + Maker00031310 Lcy11g1521 647422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1521 436 Gene3D - 244 311 IPR012340 -
Lcy11g1521 436 MobiDBLite consensus disorder prediction 49 65 - -
Lcy11g1521 436 PANTHER CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED 60 434 IPR003750 -
Lcy11g1521 436 SUPERFAMILY Nucleic acid-binding proteins 238 321 IPR012340 -
Lcy11g1521 436 Gene3D - 126 424 IPR029026 -
Lcy11g1521 436 CDD HsC9orf114-like 125 426 IPR003750 -
Lcy11g1521 436 Pfam Putative RNA methyltransferase 125 425 IPR003750 -
Lcy11g1521 436 Coils Coil 99 119 - -
Lcy11g1521 436 SUPERFAMILY alpha/beta knot 123 427 IPR029028 -
Lcy11g1521 436 MobiDBLite consensus disorder prediction 66 85 - -
Lcy11g1521 436 MobiDBLite consensus disorder prediction 46 119 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1521 K09142 - - csv:101207949 638.647
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g459 . . . . . . . . . . Cma06g01425 Cma14g01689 Car06g01228 Car14g01522 Sed12g0906 . Cpe03g01423 Bhi01g00838 Tan10g0866 Cmetu06g1993 . Hepe05g1534 . Lcy11g1521 . . . . . . . . . . . Lsi05g01440 . . Cme06g00628 . Blo07g00211 Bda11g00567 . . Bpe13g00617 . Bma06g01546 . Cmo06g01428 Cmo14g01733 . . . . . . . . . . . . . Cla05g00564 Cam05g0620 Cec05g0630 Cco05g0625 Clacu05g0616 Cmu05g0584 Cre05g0652 . Csa03g01353 Chy06g00598 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011621 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30