Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1537 ATGCTCAGGAAGACGAAGAGAAACACACAGAAGAGATCGATTAAGTGCCTAGAAGAAGAAGGAGAAGATCAAGACAAGGAATTAAAATCTATGAAACCATCAGGGCTTGTTGGTTACAACTACCTGAAACAGGTGTCGATGGTTGGAGCATCGGATGTAAACCAATGCCAGGAAGCTGTGGAAAACGACTGTTTTTGCACGGCTGCTGTTTTTTTTAATAATGGTTGCTATAAGAAGAGGATGCCATTGTTAAATGCTAGAAGAAGTCCTGAAACCACTGGTCTTGTGGCGTTTCTGAAAGTTCCCATAATTCAAGACTATGGAAATTACAAAAAACCCATTTCTGATGAAGCCCTGCTAGCGATATTTGTCCTCTGTTCCACAATTGCAGTGGCTTTTGCAGTCCTGTCCGTCTATTATCATCCCATTACAAAGGGTTTCTTAAAAGGGAAGAACCCTGCAAAGCTGAAGCCATTGGAGATGAATTTGAAGGCATTTTCATTTAATGAATTGAGAGAAGCGACAAATGGATTCAAAAACCTACTTGGCAGAGGAGCTTTTGGTGCAGTCTATAATGGGGTTTTGACGATGAGAGATCAAGAAGTGGAGGTCGCTGTAAAGAAATTGGAGAAGGTGATTGAAAAAGGAGAGAAGGAGTTCTTAACAGAAGTCCAAGTCATTGGTTTGACTCATCATAGAAACTTGCTTCAATTGTTGGGATTCTGCAAGGAGGGAGATGATCGGTTGTTGGTGTACGAGCTCATGAAAAATGGTTCTTTGTATAATTTCCTGTTTGGGAAGAAGGAAAATCAAATCCCCACATGGGAGAGCAGAGTAAAGATGGTGCTGGAAATTGCAAATTTCGGCCTGGCCAAGCTGATGAAGAAAAACCAAACACGCACAGCCACCATGTTAAGAGGAACAATAGGATACATGGCGCCAGAATGGCTGAAGAATGCACCTGTTACAACAAAGGTTGATGTTTTCAGCTTTGGAGTGATGTTGTTGGAGATCATATTCTGCAGAAAGCATGTGGAAGAAGAAGTACAAGCCGATGATGCAATAATACTTGTGGATTGGGTGGTAAGCTGTGCGAGAGCAGAAAGATTGAGAGTCATAATAAGCCATGATTCTGAAGCAATGAATGACTATAGAAGGTTTGAGAGGATGACAATGGTGGCTTTGTGGTGCACTTCTCCAGATCCGGTGAATCGGCCATCCATGAAAGACGTTGTACGGATGCTAGAAGGAAGCATTGAAGTGAGAATCCCTCCTTTGCTTGAATGA 1287 42.11 MLRKTKRNTQKRSIKCLEEEGEDQDKELKSMKPSGLVGYNYLKQVSMVGASDVNQCQEAVENDCFCTAAVFFNNGCYKKRMPLLNARRSPETTGLVAFLKVPIIQDYGNYKKPISDEALLAIFVLCSTIAVAFAVLSVYYHPITKGFLKGKNPAKLKPLEMNLKAFSFNELREATNGFKNLLGRGAFGAVYNGVLTMRDQEVEVAVKKLEKVIEKGEKEFLTEVQVIGLTHHRNLLQLLGFCKEGDDRLLVYELMKNGSLYNFLFGKKENQIPTWESRVKMVLEIANFGLAKLMKKNQTRTATMLRGTIGYMAPEWLKNAPVTTKVDVFSFGVMLLEIIFCRKHVEEEVQADDAIILVDWVVSCARAERLRVIISHDSEAMNDYRRFERMTMVALWCTSPDPVNRPSMKDVVRMLEGSIEVRIPPLLE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39250447 39252148 - Maker00031864 Lcy11g1537 647438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1537 428 SUPERFAMILY Protein kinase-like (PK-like) 163 419 IPR011009 -
Lcy11g1537 428 FunFam S-receptor-like serine/threonine-protein kinase 148 254 - -
Lcy11g1537 428 ProSitePatterns Protein kinases ATP-binding region signature. 182 208 IPR017441 GO:0005524(InterPro)
Lcy11g1537 428 ProSiteProfiles Protein kinase domain profile. 176 427 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1537 428 Gene3D Transferase(Phosphotransferase) domain 1 280 423 - -
Lcy11g1537 428 Pfam Protein tyrosine and serine/threonine kinase 179 287 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1537 428 Gene3D Phosphorylase Kinase; domain 1 158 254 - -
Lcy11g1537 428 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 13 286 IPR051343 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1537 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1535 Lcy-Chr11:39234413 Lcy11g1537 Lcy-Chr11:39250447 1.92E-203 dispersed
Lcy11g1537 Lcy-Chr11:39250447 Lcy8g2117 Lcy-Chr8:47350931 3.39E-93 dispersed
Lcy11g1536 Lcy-Chr11:39239144 Lcy11g1537 Lcy-Chr11:39250447 9.04E-94 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g481 . . . . . . . . . . . Cma14g01697 . Car14g01528 . . . Bhi01g00821 . . . . . Lcy11g1537 . . . . . . . . . . . Lsi05g01426 . . . . . . . . . . . . . Cmo14g01742 . . . . . . . . . . . . . Cla05g00552 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001427 0 3 0 0 0 4 2 3 3 1 2 4 2 1 5 1 4 1 1 4 0 4 3 2 7 6 3 2 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65462 None None None None Lcy PK