Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1539 ATGGGAAAAATTAGCCAATGGTCTTTTAGTTCAAAAGGTCCGGATTCATCGGACCCAAACGCGTCGGGAGCGACCCAAGACCCACAGGAGAAGGGCCGGGATCCACCCCAGCCCACATTCACCACCCTCGGCCTCGCCCTAGGGGAGAGGCTGAAGCAAAGGGTTGGCCTCGGCCCATTGCTGAGGCCGACCAAGGAAATAAGCCCAAAAACCGAATTGAGGCCCATGGCAGCAGAAACCCTAGAAGGGAGGAAAAGGATAAAAGCAACGGGAAGGACTCTAAGCGGGGGATCGAAAAACCGAGATCACAACACACAGACTATGGCTGAACCAATATACACTGTAGCTTCCGATAGTGAAACCACTGGGGAGGAAAAAACAACATCAACCTTTCCCGAGATTGCGGTTGGAATTGATATTGGTACTTCACAATGTAGTATTGCAATCTGGAATGGATCTCAGATAGAGCTTCTTAAGAACACTAGAAATCAGAAAATGATGAGATCATATGTCACCTTCAAGGATGATACACCTTCTGGAGGAGTTAGTAATGAGCTTAGCCATGAGTATGACATGCTCTCTGGTGCTGTAATTTTCAATATGAAACGCTTGATTGGAAGAGTTGACACTGACCCAGTTGTTCATGCAAGCAAGAGCCTTCCTTTTCTAGTGCAAACTTTGGACGTTGGTGTTCGTCCATTTGTTGCAGCTCTGGTGAATAATGTATGGAGATCGACCACTCCTGAAGAAGTTCTGGCGATCTTTCTCGTTGAACTGAAAATGATGGCTGAATATCAACTAAAGCGGCCAATTAGAAATGTTGTTTTGACAATTCCAGTTTCATTCAGCCGGTTCCAGCTTACTCGGGTTGAACGAGCTTGTGCAATGGCTGGCCTTCAAGTCAGACTGATGCCTGAACCAACAGCCATAGCTTTATTATATGCCCAACAACAGCAGCAGGCTGTACATGAGAACATGGGCAGTGGAAGCGAAAAAATTGCCCTTATTTTCAACATGGGAGCTGGGTATTGTGATGTTGCTGTTTCAGCTACAGGCGGAGGAGTGTCACAGATCAGAGCCCTGGCTGGAAGTCCTATTGGAGGTGAAGATCTACTTCAAAATACCATGAAGTATCTTTTGCCAAATTCTGAATCTATATTCTCACACCGTGGAATTGATGAGATTAGAAGGATGGGATTGCTCCGAGTTGCAACCCAAGATGCTATCCACAAGCTTTCATTCCAGTCAAATGTTCAAATCGATGTCAACTTGGGAAATGGATCAAAAATATGCAAGGTCCTAAGCCGGGACGAGTTTGAGATGGTGAACAGCAAGGTGTTTGAGAAATGTGAGAATCTCGTAAAGCAATGCTTACATGATGCAAGAGTAGAGATTCAAGATGTGAGTGATGTGGTAGTCGTTGGTGGATGTTCATACATACCAAAAATCAGAAAACTTCTGATGGAAATAACTAAAAAGAAGGCACTTTATGAAGGAATGGATCCTTTAGAAGCTGCTGTTTCTGGTGCAGCCTTAGAAGGTGCAGTGGCATCAGGCATTGGCGATCCATTTGGAAGTTTAGATCTTCTTAGCATCCAAGCGACGCCTCTCGCCATCGGAATTCGAGCTGATGGAGACAGCTTCATTTCAATTATTCCCAAGAACACCACAATGCCAGCACGCAAGGAGTTGGTTTTCACAACCGTTCAAGATAATCAAAGCGAGGCACTGATCGTTGTCTATGAAGGCGAAGAGACAAAAGCAGAAGAAAACCATCTGCTTGGCTATTTCAAGATCATTGGAATTCCACCAGCACCCAAAGGAGTCCCTGAAATTACTATTTGCATGGACATTGATTCTTCAAATATGCTAAGAGTTCTAGCTGGGGCAACACTCCCAGGTGCTCAACACCCTGCAACTCCTTTCATGGAAGTCAAGATGCCAACTGTAGACGACGGACATGGCTGGTGTGCAGAAGCTCTGCATGGAAAATACGGTGCCGCCATGGACTTGGTTACATTGCGGAAGAAAAGCTAG 2037 45.51 MGKISQWSFSSKGPDSSDPNASGATQDPQEKGRDPPQPTFTTLGLALGERLKQRVGLGPLLRPTKEISPKTELRPMAAETLEGRKRIKATGRTLSGGSKNRDHNTQTMAEPIYTVASDSETTGEEKTTSTFPEIAVGIDIGTSQCSIAIWNGSQIELLKNTRNQKMMRSYVTFKDDTPSGGVSNELSHEYDMLSGAVIFNMKRLIGRVDTDPVVHASKSLPFLVQTLDVGVRPFVAALVNNVWRSTTPEEVLAIFLVELKMMAEYQLKRPIRNVVLTIPVSFSRFQLTRVERACAMAGLQVRLMPEPTAIALLYAQQQQQAVHENMGSGSEKIALIFNMGAGYCDVAVSATGGGVSQIRALAGSPIGGEDLLQNTMKYLLPNSESIFSHRGIDEIRRMGLLRVATQDAIHKLSFQSNVQIDVNLGNGSKICKVLSRDEFEMVNSKVFEKCENLVKQCLHDARVEIQDVSDVVVVGGCSYIPKIRKLLMEITKKKALYEGMDPLEAAVSGAALEGAVASGIGDPFGSLDLLSIQATPLAIGIRADGDSFISIIPKNTTMPARKELVFTTVQDNQSEALIVVYEGEETKAEENHLLGYFKIIGIPPAPKGVPEITICMDIDSSNMLRVLAGATLPGAQHPATPFMEVKMPTVDDGHGWCAEALHGKYGAAMDLVTLRKKS 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39263235 39267590 + Maker00032096 Lcy11g1539 647440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1539 678 Gene3D Actin; Chain A, domain 4 368 449 - -
Lcy11g1539 678 Pfam Hsp70 protein 135 632 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Lcy11g1539 678 Gene3D - 319 497 - -
Lcy11g1539 678 SUPERFAMILY Actin-like ATPase domain 134 316 IPR043129 -
Lcy11g1539 678 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 530 629 IPR029047 -
Lcy11g1539 678 FunFam Heat shock 70 kDa protein 8 199 254 - -
Lcy11g1539 678 ProSitePatterns Heat shock hsp70 proteins family signature 3. 471 485 IPR018181 -
Lcy11g1539 678 PRINTS 70kDa heat shock protein signature 609 625 - -
Lcy11g1539 678 PRINTS 70kDa heat shock protein signature 528 547 - -
Lcy11g1539 678 PRINTS 70kDa heat shock protein signature 468 484 - -
Lcy11g1539 678 PRINTS 70kDa heat shock protein signature 500 520 - -
Lcy11g1539 678 PRINTS 70kDa heat shock protein signature 134 147 - -
Lcy11g1539 678 PRINTS 70kDa heat shock protein signature 274 294 - -
Lcy11g1539 678 Gene3D - 199 254 - -
Lcy11g1539 678 Gene3D - 136 515 - -
Lcy11g1539 678 MobiDBLite consensus disorder prediction 1 42 - -
Lcy11g1539 678 MobiDBLite consensus disorder prediction 1 27 - -
Lcy11g1539 678 PANTHER HEAT SHOCK PROTEIN 70KDA 135 628 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro)
Lcy11g1539 678 CDD HSP70_NBD 136 515 - -
Lcy11g1539 678 FunFam Heat shock 70 kDa protein 8 523 638 - -
Lcy11g1539 678 SUPERFAMILY Actin-like ATPase domain 330 516 IPR043129 -
Lcy11g1539 678 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 526 638 IPR029047 -
Lcy11g1539 678 FunFam Heat shock 70 kDa protein 8 368 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1539 K09489 - - csv:101206971 1048.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1539 Lcy-Chr11:39263235 Lcy3g1987 Lcy-Chr3:46979478 1.19E-79 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g487 . . . . . . . . . . . Cma14g01701 . Car14g01537 Sed12g0915 . Cpe03g01430 Bhi01g00820 Tan10g0851 Cmetu06g1845 . Hepe05g1544 . Lcy11g1539 . . . . . . . . . . . Lsi05g01597 Csa02g01145 . Cme06g00615 . Blo07g00214 Bda11g00572 . . Bpe13g00611 . Bma06g01551 . . Cmo14g01744 . . . . . . . . . . . . . Cla05g00551 Cam05g0599 Cec05g0610 Cco05g0607 Clacu05g0597 Cmu05g0567 Cre05g0635 . Csa03g01338 Chy06g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010241 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32