Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1547 ATGCCATTTCTCTCGCCAAACTCGCTCGCTTCACTGGTCGAATTGGCCGTATCGATCCGTTCTTCTCTTCTCGGCCGAGCCGCTCACGCCCAAATTCACAAAACCCTAAAAACCCCTCTTCCAGCCTTCCTCTATAACCACCTTGTGAACATGTACGCCAAACTCGACCATCTTAACTCGGCCGAACTCATCCTCGAACTCGCCCCTTGCCGCTCCGTCGTCACTTGGACCGCCCTCATCGCCGGCTCCGTCCAAAACGGCCGTTTTGCTTCTGCTATATTTCACTTCTCTGACATGTTAAGGGACTGTGTTCGACCTAATGACTTCACCTTCCCTTGCGTTCTCAAAGCCTCCACTGGTCTTCGCATGGCTGTGACAGGCAAACAGCTACACGCACTTGCGGTTAAGGAAGGATTAATAAACGATGTCTTTGTCGGGTGCAGTGCCTTCGACATGTACAGCAAATTGGGTCTTATTGAGGATGCGTACAAGGTGTTTGTTGAAATGCCTCACCGAAACCTTGAGACGTGGAATGCGTATATATCCAATTCTGTGCTCCATGGGCGGGCTGAAGACTCTGCCATTGCATTTATTGAGCTACTTCGAGTTGGTGGGAAGCCAGATTCAATAACGTTTTGTGCTTTTCTCAATGCGTGTTCAGACAAACTAGGCTTGGAGCCTGGGTGTCAGCTACATGGGTTCATTATTCGAAGTGGCTGTGGGCAGAATGTCTCTGTTTCAAATGGGTTGATTGATTTTTATGGGAAATGTGGGGTGGTTGAATTATCTGAGATGGTTTTTGACAGAATGGGAGAGCGGAACAGTGTGTCTTGGTCCTCTTTGATAGCTGCGTACGTTCAAAACAATGAGGAAGAGAAGGCTTGCTGCTTATTCTTGCGAGCAAGGAAAGAAGATATCAAACCATCTGATTTTATGGTATCGAGTGTGCTTTGTGCCTGTGCTGGTCTTTCAGAGATCGAATTGGGAAAGTCAGTTCAAGCACTAGCGGTCAAGGCATGTGTAGAGGAGAATATCTTTGTTGGAAGTGCACTGGTCGACATGTATGGAAAATGTGGAAGCATTGATGAAGCAGAGCGAGCCTTCAATGAGATGCCAGAGAGAAACTTGGTGTCTTGGAATGCTTTGTTGGGCGGATACGCGCACCAAGGACACGCAGATAAGGCGGTGGCATTGCTTGAGGAGATGGCGTCAGCTGTGGGCTTGGCACCAAGCTACGTAAGTTTGGTCTGTGCATTATCAGCTTGCAGTAGAGCAGGAAATTTGAAGATGGGGATGCAGATTTTTGAGTCCATGAAAGCAAGGTACGGTATAGAACCAGGGCCAGAGCATTATGCTTGCTTGGTAGATTTGCTTGGACGTGCTGGAATGGTAGAATGTGCATATGATTTTATAAAGAGCATGCCATTTCCTCCCACAATCTCAATCTGGGGCGCTCTGTTGGGGGCTTGTCGAATGCATGGGAAGCCAGAGTTGGGAAAGTTGGCCGCTGAGAAGCTGTTTGAACTTGATCCCAAAGATTCTGGAAACCACGTTGTGCTGTCCAATATGTTGGCTGCAACTGGCAGGTGGGAAGAAGTGACTGTCGTACGAAATGAGATGAAAGAAGTAGGGATCAAAAAGGGAGCTGGGTTCAGTTGGATAACAGTGAACAGCAGAATTCATATATTCCAAGCGAAAGACAAAAGCCACGAGAAGGACTCTGAAATTCAGGAAATGCTGGGGAAGCTGAGGAAGGAGATGCAGGAAGCTGCTGGGTGCATTGCAGACACCAATTATGCTCTTTTTGAACTGTAG 1815 47.82 MPFLSPNSLASLVELAVSIRSSLLGRAAHAQIHKTLKTPLPAFLYNHLVNMYAKLDHLNSAELILELAPCRSVVTWTALIAGSVQNGRFASAIFHFSDMLRDCVRPNDFTFPCVLKASTGLRMAVTGKQLHALAVKEGLINDVFVGCSAFDMYSKLGLIEDAYKVFVEMPHRNLETWNAYISNSVLHGRAEDSAIAFIELLRVGGKPDSITFCAFLNACSDKLGLEPGCQLHGFIIRSGCGQNVSVSNGLIDFYGKCGVVELSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKACCLFLRARKEDIKPSDFMVSSVLCACAGLSEIELGKSVQALAVKACVEENIFVGSALVDMYGKCGSIDEAERAFNEMPERNLVSWNALLGGYAHQGHADKAVALLEEMASAVGLAPSYVSLVCALSACSRAGNLKMGMQIFESMKARYGIEPGPEHYACLVDLLGRAGMVECAYDFIKSMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMLAATGRWEEVTVVRNEMKEVGIKKGAGFSWITVNSRIHIFQAKDKSHEKDSEIQEMLGKLRKEMQEAAGCIADTNYALFEL 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39331242 39338771 - Maker00031773 Lcy11g1547 647448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1547 604 NCBIfam pentatricopeptide repeat 417 446 IPR002885 -
Lcy11g1547 604 NCBIfam pentatricopeptide repeat 350 377 IPR002885 -
Lcy11g1547 604 NCBIfam pentatricopeptide repeat 276 309 IPR002885 -
Lcy11g1547 604 NCBIfam pentatricopeptide repeat 377 410 IPR002885 -
Lcy11g1547 604 FunFam Pentatricopeptide repeat-containing protein At4g14850 127 226 - -
Lcy11g1547 604 Gene3D Tetratricopeptide repeat domain 405 600 IPR011990 GO:0005515(InterPro)
Lcy11g1547 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Lcy11g1547 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Lcy11g1547 604 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 105 221 - -
Lcy11g1547 604 FunFam Pentatricopeptide repeat-containing protein At4g14850 228 328 - -
Lcy11g1547 604 FunFam Pentatricopeptide repeat-containing protein 406 604 - -
Lcy11g1547 604 Gene3D Tetratricopeptide repeat domain 329 404 IPR011990 GO:0005515(InterPro)
Lcy11g1547 604 Pfam PPR repeat family 72 117 IPR002885 -
Lcy11g1547 604 FunFam Pentatricopeptide repeat-containing protein 7 123 - -
Lcy11g1547 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
Lcy11g1547 604 Pfam E motif 495 554 IPR046848 -
Lcy11g1547 604 Pfam PPR repeat 276 305 IPR002885 -
Lcy11g1547 604 Pfam PPR repeat 419 440 IPR002885 -
Lcy11g1547 604 Pfam PPR repeat 349 375 IPR002885 -
Lcy11g1547 604 Pfam PPR repeat 248 274 IPR002885 -
Lcy11g1547 604 Pfam PPR repeat 151 173 IPR002885 -
Lcy11g1547 604 Pfam PPR repeat 377 403 IPR002885 -
Lcy11g1547 604 SUPERFAMILY TPR-like 71 513 IPR011990 GO:0005515(InterPro)
Lcy11g1547 604 Gene3D Tetratricopeptide repeat domain 23 123 IPR011990 GO:0005515(InterPro)
Lcy11g1547 604 Gene3D Tetratricopeptide repeat domain 228 327 IPR011990 GO:0005515(InterPro)
Lcy11g1547 604 Gene3D Tetratricopeptide repeat domain 124 226 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1547 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1547 Lcy-Chr11:39331242 Lcy4g0390 Lcy-Chr4:4799660 5.17E-102 dispersed
Lcy11g1547 Lcy-Chr11:39331242 Lcy7g0746 Lcy-Chr7:7201731 6.27E-100 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g511 . . . . . Bpe14g01189 . . . . . Cma14g01709 . Car14g01544 . . . Bhi01g00809 . . . . . Lcy11g1547 . . . . . . . . Cone10ag0051 . . . . . Cme06g00608 Blo02g00537 . . Bda13g00119 . . Bma02g00845 . . . Cmo14g01753 . . . . . . . . . . . . . . . . . . . . . Csa03g01327 Chy06g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010596 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 30