Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1556 ATGGAACTAACTCTCCGGCCACTGGATCTCACCGACGTCGACGATTTCATGGAGTGGGCATCGGACGAGAAAGCCGCTCGATTCTGCTCGTGGGAGCCCTACAAGGACAAATCGGACGCCATCAAGTTCATCGAGGACCAAGTCCTGCCGCACCCCTGGTTCCGAGCGATCTGCTTCGACGGTCGGCCGGTGGGGGCGATTTCGGTGACGGAGAATACGGCGGCGATGGACCGGTGCAGGGGCGAGCTAGGGTACGTTTTGGGGTCGAAATTTTGGGGGAAAGGGATCGGGACGGCGGCGGTGAAATTGGTGGCGGAGAGGATTTTCGTGGAGCGGCCGGAGTTGGAGAGGCTGGAGGCGTTGGTGGATGTGGAGAATTTGGCGTCTCAGAGAGTGCTGGAGAAGGTTGGATTTCAGAGAGAAGGAGTTCTGAGGAAATTTGGAGTGTTGAAAGGAAAAACTAGGGATTTTGTTATGTTCAGTCTCCTTTCTACTGATCTTGAATCCAAAACTGATGAACTGCAATGCTGA 531 54.8 MELTLRPLDLTDVDDFMEWASDEKAARFCSWEPYKDKSDAIKFIEDQVLPHPWFRAICFDGRPVGAISVTENTAAMDRCRGELGYVLGSKFWGKGIGTAAVKLVAERIFVERPELERLEALVDVENLASQRVLEKVGFQREGVLRKFGVLKGKTRDFVMFSLLSTDLESKTDELQC 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39400407 39400937 + Maker00032033 Lcy11g1556 647457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1556 176 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 3 156 IPR000182 GO:0016747(InterPro)
Lcy11g1556 176 Pfam Acetyltransferase (GNAT) domain 3 139 IPR000182 GO:0016747(InterPro)
Lcy11g1556 176 Gene3D - 1 175 - -
Lcy11g1556 176 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 2 166 - -
Lcy11g1556 176 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 3 163 IPR016181 -
Lcy11g1556 176 CDD NAT_SF 60 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1556 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1556 Lcy-Chr11:39400407 Lcy11g1558 Lcy-Chr11:39405143 6.45E-119 dispersed
Lcy11g1555 Lcy-Chr11:39397116 Lcy11g1556 Lcy-Chr11:39400407 1.72E-119 tandem
Lcy11g1556 Lcy-Chr11:39400407 Lcy11g1557 Lcy-Chr11:39403434 2.44E-51 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g523 . . . . . . . . . . . . . . Sed02g1304 . Cpe03g01443 Bhi01g00794 Tan10g0825 Cmetu02g2090 . Hepe05g1562 . Lcy11g1556 . . . . . . . . . . . . . . Cme06g00599 . . . Bda13g00114 . . . . . . Cmo14g01759 . . . . . . . . . . . . . Cla05g00532 Cam05g0583 Cec05g0593 Cco05g0591 Clacu05g0580 Cmu05g0550 Cre05g0619 . Csa03g01315 Chy06g00567 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006036 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 5 1 2 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19139 None None None None Lcy TR