Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1567 ATGACAATGGCCTCGATGCATTTCTGCCGCAAGCTCTTCTCTCCGGCGGGCTATTCGGCTATTCCCGGTCTGATTCTCTGCGCCTGTTTCTGTTGTTTTGTTGGGGCACTGAACCGGGATTTTCAATTGAAGTTTGGACCTTCGTGTTGTAGGCAGTACAGTATTTACAGCAGTACTCATAAATTTGACTTCACAGACTTGACACGTCCCCATTCATGGTATCCAAATGCACGAAGGAAACATCGCAAAGTTTTTTTGCACATGGGTCCAACAAATAGTGGCAAAACTCACAATGCTTTGAAGAGGCTTGAATCAAGTGATTCTGGCATATATTGTGGTCCCCTGAGATTGTTGGCCTGGGAAGTGGCAAAGCGGTTGAATAAGGCTAAAATTCCATGTGATCTGATCACAGGACAAGAAAGGGAGGAAGTTGATGGTGCAAAACACAAGGCTGTGACTGTTGAGATGGCTGATATGTTGGGATGTAAGACAAGAGGTTATTCATTTACACGTGCACTACTTGGAATTTGTGCTGATGAGCTTCATCTTTGTGGAGATGCGGCTGTTGTACCCCTTATTCAGGAAATTCTTAAAGTAACTGGTGATGACATTGAGGTGCAATACTATGAGAGACTTTCACCTCTGATTCCAATGAAAGTTCCTCTTGGACCCTATTCTAATATTAGGACGGGTGATTGCATTGTTACCTTTTCACGTCGTAAAATATATGGTTATAAGAGAAAAATTGAGAGCGAGGGTAGACATCTTTGTTCTGTAGTTTATGGTTCACTACCACCAGAAACTCGAACGAGGCAGATGAGTTTCATTATTTTCTTAAACTGTCGACCAACTTTCTTTTATCTGTTGCATGCTTTCTCTCTTAAAAGTTTTATGCTATTAACTACTTTGCTCCATGTTAAAACTTTAGTGGTTGATTATATTGGCCCTGAAGTGAGATGCTATTTAGAACTGCAGGCAACAATGTTCAATGATACAACCAGTGAGTTTGATGTGCTGGTGGCTAGCGATGCCATTGGGATGGGTCTTAATTTGAACATCTCGAGGATCATATTTTCAACTATGGAGAAATTTGATGGTTTTGAGATGCGGGAGCTTACTGTACCAGAGATCAAGCAGATTGCAGGTAGAGCTGGCAGGTATGGATCCAAATTTCCCATTGGTGAAGTAACTTGTATAAATGGAGATGATTTACCCTTACTTCATTCATCGCTAAAGTCCGCGTCTCCCACCATAGAGAGAGCTGGGCTATTTCCAACTTTTGAACTCATGTATTTATACTCCCGTCTACATCCAGAAAATGGCCTGCGACAGATACTGGAGCACTTTGTTGAGAATGCTAAATTATCTGAAAATTATTTCATTGCTGACTGTGAAGAAATGTTGAAAGTTGCTGCCGTCCTTGATGAGATGCCTCTCAGTTTGCATGATAAGTACCTTTTCTGTATCAGCCCTGTGGACATGGCTGATGACATTACATCCCAAGGTCTTACACAGTTTGCTCAAAATTATGCAAATAAAGGCATTGTTCGGCTACGAGAAATATTTACAGCAGGAACGCTTCAAGTGCCTGAAACTCAAGCTGCACTGAAGGAGCTGGAATCCATTCATAAGGTGTTGGATCTCTATGTTTGGTTGAGTTTTCGACTGGAGGAATCATTCCCAGACCGCGAACTGGCAGTTGCACAAAAGTCAGTCTGCAGCATGCTGATCGAGGAGTTTTTGGGAAGACTGGGATGGCAAAGACCAAGAACAAGGCAATTAAAGTCGAACATCCACTCAAGGTCCCTCCTATCCTCTGGTGTTAAACGACGTCTCTGA 1839 42.41 MTMASMHFCRKLFSPAGYSAIPGLILCACFCCFVGALNRDFQLKFGPSCCRQYSIYSSTHKFDFTDLTRPHSWYPNARRKHRKVFLHMGPTNSGKTHNALKRLESSDSGIYCGPLRLLAWEVAKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADMLGCKTRGYSFTRALLGICADELHLCGDAAVVPLIQEILKVTGDDIEVQYYERLSPLIPMKVPLGPYSNIRTGDCIVTFSRRKIYGYKRKIESEGRHLCSVVYGSLPPETRTRQMSFIIFLNCRPTFFYLLHAFSLKSFMLLTTLLHVKTLVVDYIGPEVRCYLELQATMFNDTTSEFDVLVASDAIGMGLNLNISRIIFSTMEKFDGFEMRELTVPEIKQIAGRAGRYGSKFPIGEVTCINGDDLPLLHSSLKSASPTIERAGLFPTFELMYLYSRLHPENGLRQILEHFVENAKLSENYFIADCEEMLKVAAVLDEMPLSLHDKYLFCISPVDMADDITSQGLTQFAQNYANKGIVRLREIFTAGTLQVPETQAALKELESIHKVLDLYVWLSFRLEESFPDRELAVAQKSVCSMLIEEFLGRLGWQRPRTRQLKSNIHSRSLLSSGVKRRL 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39476578 39483314 + Maker00031285 Lcy11g1567 647468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1567 612 Pfam Suv3 C-terminal domain 1 470 511 IPR041082 -
Lcy11g1567 612 Gene3D - 410 489 - -
Lcy11g1567 612 Gene3D - 211 275 IPR027417 -
Lcy11g1567 612 Gene3D - 291 409 IPR027417 -
Lcy11g1567 612 Pfam Mitochondrial degradasome RNA helicase subunit C terminal 536 581 IPR022192 GO:0016817(InterPro)
Lcy11g1567 612 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 64 564 IPR050699 GO:0000965(PANTHER)|GO:0003724(PANTHER)|GO:0006401(PANTHER)|GO:0045025(PANTHER)
Lcy11g1567 612 Pfam DEXQ-box helicase domain of Suv3 70 209 - -
Lcy11g1567 612 CDD SF2_C_suv3 213 398 - -
Lcy11g1567 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 390 IPR027417 -
Lcy11g1567 612 FunFam DExH-box ATP-dependent RNA helicase DExH18 mitochondrial 70 161 - -
Lcy11g1567 612 Gene3D - 490 598 - -
Lcy11g1567 612 FunFam ATP-dependent RNA helicase SUV3, mitochondrial 414 487 - -
Lcy11g1567 612 Pfam Helicase conserved C-terminal domain 329 388 IPR001650 -
Lcy11g1567 612 SMART helicmild6 298 388 IPR001650 -
Lcy11g1567 612 Gene3D - 70 210 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1567 K17675 - - csv:101204337 929.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1567 Lcy-Chr11:39476578 Lcy13g0702 Lcy-Chr13:10170419 6.23E-116 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g532 . . . . . Bpe14g01202 . . . . . Cma14g01728 . Car14g01559 . . Cpe03g01451 Bhi01g00784 . . . Hepe05g1572 . Lcy11g1567 . . . . . . . Cone14ag0866 . . . Lsi05g01623 . . Cme06g00591 Blo02g00530 . . Bda13g00108 . . Bma02g00831 . . . Cmo14g01767 . . . . . . . . . . . . . Cla05g00523 Cam05g0576 Cec05g0586 Cco05g0584 Clacu05g0572 Cmu05g0542 Cre05g0611 . Csa03g01305 Chy06g00559 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008560 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 34