Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1570 ATGGATTTGAAAGGAAACGATGTGGGGGGTATTACGATCCCCAAGGAGACAGAGAGCGAGGATAGAACTCTGAACTCAAAGATGGCTGGTATGGGAAGCGTTAGCAGCAAAGATATGATATTCAGAGCAGATAAGATTGATTTGAAAAACCTGGATATGCAGCTGGAAAAGCACTTGAGCCGTGTTTGGTCAAAGAGCGTTGAGATCCAAAAGCCTAAGGAGGAGTGGGAGATTGATCTGGCTAAACTTGATATCCGATATGTTGTTGCTCACGGGACTTATGGAACTGTATTCAGGGGTACATATGACAATCAAGATGTTGCAGTGAAGCTATTGGACTGGGGGGAGGATGGTCTTGCCACAACTGCTGAAACAGCTGCTTTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCACAAACTTGACCATCCTAATGTTACAAAATTTGTTGGAGCTTCAATGGGAGCTACAAATCTTAAGATTCCTTCAAAAGGTTCTTCAATGGATAGTCAAAATTCGCTTCCATCTAGGGCCTGCTGTGTTGTTGTTGAGTATCTTCCTGGTGGGACATTAAAACAATACTTGATAAGGAACAGGAGAAAGAAACTTGCCTTTAAGGTTGTGATTCAATTAGCTTTGGATCTCTCTAGAGGGCTTAGCTATCTACACTCCAAGAAGATTGTACACCGTGATGTCAAAACTGAAAATATGTTGATAGATGGTCAAAGAACTCTTAAAATTGCTGATTTTGGGGTTGCCCGTGTTGAAGCTCAGAATCCAAGAGACATGACTGGGGAAACTGGTACCCTTGGATACATGGCCCCAGAGGTTCTTGATGGGAAGCCGTACAATAGAAGATGTGATGTCTATAGCTTTGGCATCTGCTTATGGGAAATTTATTGCTGTGATATGCCTTACCCCGATCTTAGTTTCGCTGACGTGTCGTCTGCAGTTGTTCGACAGAATCTGCGACCTGATATCCCGAAATGCTGTCCAAGTTCGCTGGCTAATGTGATGAAGAAATGTTGGGATGGAAACCCATCCAAACGCCCTGAAATGGATGAGGTTGTCAAAATGTTGGAAGCCATTGATACAACTAAAGGAGGTGGGATGGTTCCTGATGACCAAGTCCCTGGCTGCTTCTGTTTCGGCCCGCCCCGGGGTCCGTAA 1173 44.67 MDLKGNDVGGITIPKETESEDRTLNSKMAGMGSVSSKDMIFRADKIDLKNLDMQLEKHLSRVWSKSVEIQKPKEEWEIDLAKLDIRYVVAHGTYGTVFRGTYDNQDVAVKLLDWGEDGLATTAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGATNLKIPSKGSSMDSQNSLPSRACCVVVEYLPGGTLKQYLIRNRRKKLAFKVVIQLALDLSRGLSYLHSKKIVHRDVKTENMLIDGQRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPDIPKCCPSSLANVMKKCWDGNPSKRPEMDEVVKMLEAIDTTKGGGMVPDDQVPGCFCFGPPRGP 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39503487 39507939 - Maker00031877 Lcy11g1570 647471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1570 390 ProSiteProfiles Protein kinase domain profile. 83 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1570 390 CDD STKc_MAP3K-like 89 361 - -
Lcy11g1570 390 SMART serkin_6 83 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1570 390 FunFam Serine/threonine-protein kinase HT1 187 372 - -
Lcy11g1570 390 Gene3D Transferase(Phosphotransferase) domain 1 187 371 - -
Lcy11g1570 390 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 47 362 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Lcy11g1570 390 Pfam Protein tyrosine and serine/threonine kinase 87 361 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1570 390 Gene3D Phosphorylase Kinase; domain 1 72 164 - -
Lcy11g1570 390 FunFam Kinase suppressor of Ras 1 72 166 - -
Lcy11g1570 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1570 390 SUPERFAMILY Protein kinase-like (PK-like) 63 361 IPR011009 -
Lcy11g1570 390 PRINTS Tyrosine kinase catalytic domain signature 332 354 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1570 390 PRINTS Tyrosine kinase catalytic domain signature 184 197 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1570 390 PRINTS Tyrosine kinase catalytic domain signature 288 310 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1570 390 PRINTS Tyrosine kinase catalytic domain signature 222 240 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0222 Lcy-Chr10:3512089 Lcy11g1570 Lcy-Chr11:39503487 1.26E-191 dispersed
Lcy11g1570 Lcy-Chr11:39503487 Lcy2g0649 Lcy-Chr2:5539066 1.15E-182 dispersed
Lcy11g1570 Lcy-Chr11:39503487 Lcy3g1584 Lcy-Chr3:42991060 7.44E-230 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65463 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1570 - - - 0.0