Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1570 | ATGGATTTGAAAGGAAACGATGTGGGGGGTATTACGATCCCCAAGGAGACAGAGAGCGAGGATAGAACTCTGAACTCAAAGATGGCTGGTATGGGAAGCGTTAGCAGCAAAGATATGATATTCAGAGCAGATAAGATTGATTTGAAAAACCTGGATATGCAGCTGGAAAAGCACTTGAGCCGTGTTTGGTCAAAGAGCGTTGAGATCCAAAAGCCTAAGGAGGAGTGGGAGATTGATCTGGCTAAACTTGATATCCGATATGTTGTTGCTCACGGGACTTATGGAACTGTATTCAGGGGTACATATGACAATCAAGATGTTGCAGTGAAGCTATTGGACTGGGGGGAGGATGGTCTTGCCACAACTGCTGAAACAGCTGCTTTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCACAAACTTGACCATCCTAATGTTACAAAATTTGTTGGAGCTTCAATGGGAGCTACAAATCTTAAGATTCCTTCAAAAGGTTCTTCAATGGATAGTCAAAATTCGCTTCCATCTAGGGCCTGCTGTGTTGTTGTTGAGTATCTTCCTGGTGGGACATTAAAACAATACTTGATAAGGAACAGGAGAAAGAAACTTGCCTTTAAGGTTGTGATTCAATTAGCTTTGGATCTCTCTAGAGGGCTTAGCTATCTACACTCCAAGAAGATTGTACACCGTGATGTCAAAACTGAAAATATGTTGATAGATGGTCAAAGAACTCTTAAAATTGCTGATTTTGGGGTTGCCCGTGTTGAAGCTCAGAATCCAAGAGACATGACTGGGGAAACTGGTACCCTTGGATACATGGCCCCAGAGGTTCTTGATGGGAAGCCGTACAATAGAAGATGTGATGTCTATAGCTTTGGCATCTGCTTATGGGAAATTTATTGCTGTGATATGCCTTACCCCGATCTTAGTTTCGCTGACGTGTCGTCTGCAGTTGTTCGACAGAATCTGCGACCTGATATCCCGAAATGCTGTCCAAGTTCGCTGGCTAATGTGATGAAGAAATGTTGGGATGGAAACCCATCCAAACGCCCTGAAATGGATGAGGTTGTCAAAATGTTGGAAGCCATTGATACAACTAAAGGAGGTGGGATGGTTCCTGATGACCAAGTCCCTGGCTGCTTCTGTTTCGGCCCGCCCCGGGGTCCGTAA | 1173 | 44.67 | MDLKGNDVGGITIPKETESEDRTLNSKMAGMGSVSSKDMIFRADKIDLKNLDMQLEKHLSRVWSKSVEIQKPKEEWEIDLAKLDIRYVVAHGTYGTVFRGTYDNQDVAVKLLDWGEDGLATTAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGATNLKIPSKGSSMDSQNSLPSRACCVVVEYLPGGTLKQYLIRNRRKKLAFKVVIQLALDLSRGLSYLHSKKIVHRDVKTENMLIDGQRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPDIPKCCPSSLANVMKKCWDGNPSKRPEMDEVVKMLEAIDTTKGGGMVPDDQVPGCFCFGPPRGP | 390 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 39503487 | 39507939 | - | Maker00031877 | Lcy11g1570 | 647471 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1570 | 390 | ProSiteProfiles | Protein kinase domain profile. | 83 | 364 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g1570 | 390 | CDD | STKc_MAP3K-like | 89 | 361 | - | - | |
Lcy11g1570 | 390 | SMART | serkin_6 | 83 | 364 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g1570 | 390 | FunFam | Serine/threonine-protein kinase HT1 | 187 | 372 | - | - | |
Lcy11g1570 | 390 | Gene3D | Transferase(Phosphotransferase) domain 1 | 187 | 371 | - | - | |
Lcy11g1570 | 390 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 47 | 362 | IPR051681 | GO:0004674(PANTHER)|GO:0005886(PANTHER) | |
Lcy11g1570 | 390 | Pfam | Protein tyrosine and serine/threonine kinase | 87 | 361 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy11g1570 | 390 | Gene3D | Phosphorylase Kinase; domain 1 | 72 | 164 | - | - | |
Lcy11g1570 | 390 | FunFam | Kinase suppressor of Ras 1 | 72 | 166 | - | - | |
Lcy11g1570 | 390 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 228 | 240 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy11g1570 | 390 | SUPERFAMILY | Protein kinase-like (PK-like) | 63 | 361 | IPR011009 | - | |
Lcy11g1570 | 390 | PRINTS | Tyrosine kinase catalytic domain signature | 332 | 354 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy11g1570 | 390 | PRINTS | Tyrosine kinase catalytic domain signature | 184 | 197 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy11g1570 | 390 | PRINTS | Tyrosine kinase catalytic domain signature | 288 | 310 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy11g1570 | 390 | PRINTS | Tyrosine kinase catalytic domain signature | 222 | 240 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0222 | Lcy-Chr10:3512089 | Lcy11g1570 | Lcy-Chr11:39503487 | 1.26E-191 | dispersed | |
Lcy11g1570 | Lcy-Chr11:39503487 | Lcy2g0649 | Lcy-Chr2:5539066 | 1.15E-182 | dispersed | |
Lcy11g1570 | Lcy-Chr11:39503487 | Lcy3g1584 | Lcy-Chr3:42991060 | 7.44E-230 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65463 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1570 | - | - | - | 0.0 |