Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1575 ATGAAAACCTCAAAATCCCTTCTCCCAAAATCCCTCCTCCTCATCTCCATTCTCATCCTCCTCCCAAAACCTTCCCATCAAGCATCTCCGCCCCTGCCATCGCCATCGCCATCGCCGCCACCGCCATTCCTCCCGAACCCGAGGCTCCTCAAGGCCTACACTGCTCTCCAAGCTTGGAAACACGCCATCACCGCCGACCCGACCAACTTCACCGCCGATTGGTATGGCCCCACTGTCTGCAACTATTCCGGTGTCTATTGCGCCCCCGCCCCCGACGATCCCTACATCCTCACCGTCGCAGGGATCGACCTCAACCATGCCAACCTCTCGGGCACCCTGCCCGACGACCTCGGCCTCCTGACCGACCTTGCCCTGTTCCACATCAACTCCAATCGCTTCTGTGGCACCATCCCCAACTCCTTCCGGTGCCTCACTCTCCTCTTCGAGCTGGATGTCAGCAACAATGACTTCTCCGGCGAGTTCCCCTCTGTAATTCTCTCTCTCCCATCTCTCAAATTCCTCGACATTCGATTCAACAAATTCCATGGCGATCTCCCTTCTCCCCTGTTTGACATGAAACTCGATGCTCTGTTCATCAACAACAACGATTTCAAATTCTCCCTGCCGGAAAACATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAACATCAATGGCTGCCTCCCCTCGAGTTTATCCAATATGAACATCACACTCAATGAAATTATAATCACGAGCAGTGGGTTGACTGGGTGTTTGCCGCCGGAAATTGGGTCGTTGAGCAATCTCACCGTCTTCGATGTCAGTGACAACAATCTCGTCGGGCCGTTGCCGGAGACGATGGCCGGAATGAAGAAATTGGAGCAGTTAAACGTCGCACATAATCAACTATCCGGCGAGATTCCGGCGAGTATTTGCTCGTTGCCGAAATTGCAGAATTTCACTTACTCGTATAACTTCTTCTGCAGTGAGCCGTCGGTGTGCCTGAAACTTCAGGCCAGTGATGACCGGAAAAATTGTTTGCCGGAAAGGCCGCTGCAACGTTTGCCGGAGGAATGTAAAGCTTTCTACTCTTACCCTGTTGATTGCAGCGTCTTTGGCTGTACTCGTCGGCCGCCTCCGCCTCCGCCTCCACCTCCACCTCCACCACCACCGCCGCCGCCACCGCCACCTCCACCTCCGCCGCCGCTTTATTAG 1206 54.15 MKTSKSLLPKSLLLISILILLPKPSHQASPPLPSPSPSPPPPFLPNPRLLKAYTALQAWKHAITADPTNFTADWYGPTVCNYSGVYCAPAPDDPYILTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNRFCGTIPNSFRCLTLLFELDVSNNDFSGEFPSVILSLPSLKFLDIRFNKFHGDLPSPLFDMKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMNITLNEIIITSSGLTGCLPPEIGSLSNLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPSVCLKLQASDDRKNCLPERPLQRLPEECKAFYSYPVDCSVFGCTRRPPPPPPPPPPPPPPPPPPPPPPPPPLY 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39566670 39567875 - Maker00031545 Lcy11g1575 647476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1575 401 Gene3D Ribonuclease Inhibitor 51 215 IPR032675 -
Lcy11g1575 401 FunFam Leucine-rich repeat extensin-like protein 1 53 214 - -
Lcy11g1575 401 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 41 395 IPR051582 -
Lcy11g1575 401 SUPERFAMILY L domain-like 52 333 - -
Lcy11g1575 401 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 238 327 - -
Lcy11g1575 401 Pfam Leucine rich repeat N-terminal domain 54 87 IPR013210 -
Lcy11g1575 401 MobiDBLite consensus disorder prediction 373 401 - -
Lcy11g1575 401 Gene3D Ribonuclease Inhibitor 216 335 IPR032675 -
Lcy11g1575 401 Pfam Leucine rich repeat 241 300 IPR001611 GO:0005515(InterPro)
Lcy11g1575 401 Pfam Leucine Rich Repeat 147 167 IPR001611 GO:0005515(InterPro)
Lcy11g1575 401 Pfam Leucine Rich Repeat 170 190 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1575 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1575 Lcy-Chr11:39566670 Lcy4g0668 Lcy-Chr4:8106355 5.70E-45 dispersed
Lcy11g1575 Lcy-Chr11:39566670 Lcy13g1146 Lcy-Chr13:26469880 1.69E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g543 . . . . . . . . . . Cma06g01378 Cma14g01740 Car06g01193 Car14g01568 Sed02g1338 Cpe08g00278 Cpe03g01458 Bhi01g00768 Tan10g0798 Cmetu11g1491 . . . Lcy11g1575 . . . . . . . . . . Cone4ag0264 Lsi05g01631 . . Cme06g00581 . . Bda11g00593 . . . . . . Cmo06g01390 Cmo14g01778 . . . . . . . . . . . . . Cla05g00515 Cam05g0566 Cec05g0578 Cco05g0576 Clacu05g0563 Cmu05g0534 Cre05g0603 . Csa03g01297 Chy06g00552 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy4g2157 . 73 242 Leucine-rich Repeat extension Gene Families AT1G62440 70.0 5.8e-42 170.2
Lcy2g0804 . 56 228 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 7.6e-42 169.9
Lcy9g2147 . 61 400 Leucine-rich Repeat extension Gene Families AT1G62440 56.5 7.6e-42 169.9
Lcy9g2149 . 61 400 Leucine-rich Repeat extension Gene Families AT1G62440 56.5 7.6e-42 169.9
Lcy2g0804 . 1 400 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 5.6e-66 250.0
Lcy4g2157 . 15 420 Leucine-rich Repeat extension Gene Families AT4G13340 71.3 5.2e-64 243.4
Lcy9g2147 . 22 218 Leucine-rich Repeat extension Gene Families AT4G13340 63.5 7.4e-42 169.9
Lcy9g2149 . 22 218 Leucine-rich Repeat extension Gene Families AT4G13340 63.5 7.4e-42 169.9
Lcy4g2157 . 48 420 Leucine-rich Repeat extension Gene Families AT3G24480 73.9 2.4e-70 263.8
Lcy2g0804 . 19 395 Leucine-rich Repeat extension Gene Families AT3G24480 72.8 4.2e-70 263.1
Lcy9g2147 . 22 218 Leucine-rich Repeat extension Gene Families AT3G24480 67.7 5.0e-47 186.4
Lcy9g2149 . 22 218 Leucine-rich Repeat extension Gene Families AT3G24480 67.7 5.0e-47 186.4
Lcy11g1575 . 15 372 Leucine-rich Repeat extension Gene Families AT3G22800 65.5 3.5e-58 223.4
Lcy2g0804 . 68 396 Leucine-rich Repeat extension Gene Families AT3G22800 62.2 8.9e-38 155.6
Lcy4g0668 . 61 388 Leucine-rich Repeat extension Gene Families AT3G22800 60.5 1.5e-37 154.8
Lcy11g1575 . 11 372 Leucine-rich Repeat extension Gene Families AT5G25550 61.6 7.9e-41 165.6
Lcy4g2157 . 59 418 Leucine-rich Repeat extension Gene Families AT5G25550 63.0 7.4e-39 159.1
Lcy2g0804 . 42 400 Leucine-rich Repeat extension Gene Families AT5G25550 61.5 9.7e-39 158.7
Lcy9g2147 . 50 397 Leucine-rich Repeat extension Gene Families AT5G25550 58.0 1.4e-37 154.8
Lcy9g2149 . 50 397 Leucine-rich Repeat extension Gene Families AT5G25550 58.0 1.4e-37 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 2 1 2 37