Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1575 ATGAAAACCTCAAAATCCCTTCTCCCAAAATCCCTCCTCCTCATCTCCATTCTCATCCTCCTCCCAAAACCTTCCCATCAAGCATCTCCGCCCCTGCCATCGCCATCGCCATCGCCGCCACCGCCATTCCTCCCGAACCCGAGGCTCCTCAAGGCCTACACTGCTCTCCAAGCTTGGAAACACGCCATCACCGCCGACCCGACCAACTTCACCGCCGATTGGTATGGCCCCACTGTCTGCAACTATTCCGGTGTCTATTGCGCCCCCGCCCCCGACGATCCCTACATCCTCACCGTCGCAGGGATCGACCTCAACCATGCCAACCTCTCGGGCACCCTGCCCGACGACCTCGGCCTCCTGACCGACCTTGCCCTGTTCCACATCAACTCCAATCGCTTCTGTGGCACCATCCCCAACTCCTTCCGGTGCCTCACTCTCCTCTTCGAGCTGGATGTCAGCAACAATGACTTCTCCGGCGAGTTCCCCTCTGTAATTCTCTCTCTCCCATCTCTCAAATTCCTCGACATTCGATTCAACAAATTCCATGGCGATCTCCCTTCTCCCCTGTTTGACATGAAACTCGATGCTCTGTTCATCAACAACAACGATTTCAAATTCTCCCTGCCGGAAAACATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAACATCAATGGCTGCCTCCCCTCGAGTTTATCCAATATGAACATCACACTCAATGAAATTATAATCACGAGCAGTGGGTTGACTGGGTGTTTGCCGCCGGAAATTGGGTCGTTGAGCAATCTCACCGTCTTCGATGTCAGTGACAACAATCTCGTCGGGCCGTTGCCGGAGACGATGGCCGGAATGAAGAAATTGGAGCAGTTAAACGTCGCACATAATCAACTATCCGGCGAGATTCCGGCGAGTATTTGCTCGTTGCCGAAATTGCAGAATTTCACTTACTCGTATAACTTCTTCTGCAGTGAGCCGTCGGTGTGCCTGAAACTTCAGGCCAGTGATGACCGGAAAAATTGTTTGCCGGAAAGGCCGCTGCAACGTTTGCCGGAGGAATGTAAAGCTTTCTACTCTTACCCTGTTGATTGCAGCGTCTTTGGCTGTACTCGTCGGCCGCCTCCGCCTCCGCCTCCACCTCCACCTCCACCACCACCGCCGCCGCCACCGCCACCTCCACCTCCGCCGCCGCTTTATTAG 1206 54.15 MKTSKSLLPKSLLLISILILLPKPSHQASPPLPSPSPSPPPPFLPNPRLLKAYTALQAWKHAITADPTNFTADWYGPTVCNYSGVYCAPAPDDPYILTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNRFCGTIPNSFRCLTLLFELDVSNNDFSGEFPSVILSLPSLKFLDIRFNKFHGDLPSPLFDMKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMNITLNEIIITSSGLTGCLPPEIGSLSNLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPSVCLKLQASDDRKNCLPERPLQRLPEECKAFYSYPVDCSVFGCTRRPPPPPPPPPPPPPPPPPPPPPPPPPLY 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39566670 39567875 - Maker00031545 Lcy11g1575 647476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1575 401 Gene3D Ribonuclease Inhibitor 51 215 IPR032675 -
Lcy11g1575 401 FunFam Leucine-rich repeat extensin-like protein 1 53 214 - -
Lcy11g1575 401 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 41 395 IPR051582 -
Lcy11g1575 401 SUPERFAMILY L domain-like 52 333 - -
Lcy11g1575 401 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 238 327 - -
Lcy11g1575 401 Pfam Leucine rich repeat N-terminal domain 54 87 IPR013210 -
Lcy11g1575 401 MobiDBLite consensus disorder prediction 373 401 - -
Lcy11g1575 401 Gene3D Ribonuclease Inhibitor 216 335 IPR032675 -
Lcy11g1575 401 Pfam Leucine rich repeat 241 300 IPR001611 GO:0005515(InterPro)
Lcy11g1575 401 Pfam Leucine Rich Repeat 147 167 IPR001611 GO:0005515(InterPro)
Lcy11g1575 401 Pfam Leucine Rich Repeat 170 190 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1575 Lcy-Chr11:39566670 Lcy4g0668 Lcy-Chr4:8106355 5.70E-45 dispersed
Lcy11g1575 Lcy-Chr11:39566670 Lcy13g1146 Lcy-Chr13:26469880 1.69E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1575 - - - 0.0