Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1576 ATGGGTAATGCAGATTTCGATTGCCCTCACCGAGTCGCCATTCCACCAACGAAGCCATTTTTGGAGTCCTTAGGCTCAAACCTCAAAGAAACTTTCTTCCCCGACGACCCTTTCAAACAGTTCAAAAACCAGCCTCTACGAACCCAGATCCTCCTCTGGTTCAAATACTTCGTCCCCTTCCTCGAATGGGCTCCTCGCTACACCCTCGACTTCTTCAAAGCCGACCTCGTCGCCGGTATCACCATCGCCAGTTTGGCCGTCCCTCAGGGCATCAGCTATGCCAATCTCGCCAGCATCCCTCCCATCATCGGACTTTATTCAAGCTTTGTCCCTCCGTTGATATACGCCATGCTTGGTAGCTCGAAGGACTTGGCGGTGGGGACGGTGGCGGTGGCGTCGCTGCTCATGTCCGCCATGTTGGGGAAGGAAGTCAGCCCGGTGGAGCATCCGAAGCAATACGTTCAGTTGGTTTTCACCGCCACTTTCTTCGCCGGAGTTTTCCAAGCTTCCCTCGGGTTTCTCAGATTGGGGCTTATTGTGGACTTTTTGTCGCATGCAACAATAGTGGGGTTCATGGGTGGTGCGGCAACGGTGGTTTGTCTTCAGCAGCTAAAAGGCATAATGGGATTAGTTCATTTTACGCATGAGACTGATATTATTTCCGTTATGCGCTCTGTTTTCTCTCAAGTTCATCAGAGCAAGAAGAAATCAATCTTCTTTTGGATAAATGCATTGGCGCCTTTGACTTCGGTCATCTTGGGAAGCCTTCTCGTCTACTTCACCCACGCTGAAAAGCATGGAGTTCAAGTGATTGGGCATTTGAAGAAAGGGTTGAATCCCCTATCTGTGAAAGATTTGGTATTTGGATCTCCCCATCTCGCCATTGCCATCAAAACAGGGATCATCATCGGAATCATAGGCCTTGCTGAAGGAGTTGCAGTGGGAAGAAGTTTTGCTGCATTTAAGAATTACCACATTGATGGAAACAAGGAGATGATAGCATTTGGGATGATGAACATTGTTGGTTCCTGCACTTCTTGCTACTTGACTGCAGGGCCGTTTTCAAGGAGTGCTGTAAATTTTAATGCAGGATGTAAAACTGCGGTCTCGAATATCGTCATGGCAATTGCTCTGATGATCACTCTGTTGTTTTTGACGCCATTTTTTCATTACACACCCCTTGTGGTGCTCTCCTCCATAATCATCACTGCTATGCTTGGCCTAATCAACTATGAAGAAGTCATCCACCTTTGGAAAATCGACAAATTTGACTTTGTCGTCTGCCTCGGTGCATATATCGGTGTCGTCTTTGGCAGTGTTGAAACGGGCTTGATCGTTGCGATCGCACTCTCCGTGTTAAGGTTGCTTCTCGTGATCGCGAGGCCAAGAACTTTAGTATTAGGCAACATTCCCAACTCCACAATTTACAGAAGCATTGATCAATACCCAACAGCTAACCATGTGCCTGGAATTCTCATCCTTCAATTGGAGGCACCAATCTATTTTGCCAACTCAAATTACCTGAGAGAAAGGCTTTCCAGGTGGATTACAGATGAAGAAGAGAGGATAAAATCATCAGGAGAAACCAGCTTGCAGTACATAATTCTAGACATTTCAGGCGTTAGTAGCATTGATTCAAGTGGGATCAGCATGCTTGAAGAGGTTAAGAAGAGCACTGAAAGAAAGGGTCTCAAACTTGTGCTTGCAAATCCAAGAAGTGAAGTGATCAAAAAGCTAAACAAGTCGAAGTTCATCGAAGCGATCGGGCAGGAATGGATCTATCTTACAGTGGGAGAGGCTGTAACAGCCTGCAACTTCATGCTCCACACTTGTAAGCCAAATCTTGTTGCTGCTGAATTAGATTCACCTGTGAACAATGTGTAG 1884 46.5 MGNADFDCPHRVAIPPTKPFLESLGSNLKETFFPDDPFKQFKNQPLRTQILLWFKYFVPFLEWAPRYTLDFFKADLVAGITIASLAVPQGISYANLASIPPIIGLYSSFVPPLIYAMLGSSKDLAVGTVAVASLLMSAMLGKEVSPVEHPKQYVQLVFTATFFAGVFQASLGFLRLGLIVDFLSHATIVGFMGGAATVVCLQQLKGIMGLVHFTHETDIISVMRSVFSQVHQSKKKSIFFWINALAPLTSVILGSLLVYFTHAEKHGVQVIGHLKKGLNPLSVKDLVFGSPHLAIAIKTGIIIGIIGLAEGVAVGRSFAAFKNYHIDGNKEMIAFGMMNIVGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMAIALMITLLFLTPFFHYTPLVVLSSIIITAMLGLINYEEVIHLWKIDKFDFVVCLGAYIGVVFGSVETGLIVAIALSVLRLLLVIARPRTLVLGNIPNSTIYRSIDQYPTANHVPGILILQLEAPIYFANSNYLRERLSRWITDEEERIKSSGETSLQYIILDISGVSSIDSSGISMLEEVKKSTERKGLKLVLANPRSEVIKKLNKSKFIEAIGQEWIYLTVGEAVTACNFMLHTCKPNLVAAELDSPVNNV 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39572673 39578188 - Maker00032135 Lcy11g1576 647477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1576 627 Pfam Sulfate permease family 72 429 IPR011547 GO:0016020(InterPro)
Lcy11g1576 627 ProSiteProfiles STAS domain profile. 481 604 IPR002645 -
Lcy11g1576 627 PANTHER SULFATE TRANSPORTER 47 604 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy11g1576 627 FunFam Sulfate transporter 31 461 607 - -
Lcy11g1576 627 NCBIfam sulfate permease 59 600 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy11g1576 627 SUPERFAMILY SpoIIaa-like 484 604 IPR036513 -
Lcy11g1576 627 CDD STAS_SulP_like_sulfate_transporter 482 597 - -
Lcy11g1576 627 Pfam STAS domain 482 600 IPR002645 -
Lcy11g1576 627 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Lcy11g1576 627 Gene3D STAS domain 461 606 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1576 Lcy-Chr11:39572673 Lcy3g2098 Lcy-Chr3:48012647 3.09E-233 dispersed
Lcy11g1576 Lcy-Chr11:39572673 Lcy3g1580 Lcy-Chr3:42933186 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1576 K17471 - csv:101203205 1100.89