Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1580 ATGCGTGTGTTTATCAATTTCATTATCGTTACAATCTCTCGAAACTTGCATTTACAGGATCCAAGAGAGGAAGTGATTCAGGCATGGTATATGGATGATAGTGACGAAGACCAGAGGCTTCCTCATCATCTTGAACCAAAGCAATATTTGTCCCTCCAACAACTTGATGAACTTGGAGTTCTGAGCTGGAAACTGAATGCGGACATATATGAAACAGATGAGGAATTGAAGAAGATACGTCGTGATCGTAATTACTCCTACATGGACTTTTGTGAGGTCTGTCCAGAAAAGCTTCCTAATTATGATGAGAAGATTAAAAACTTTTACGAGGAACACCTTCACACTGATGAGGAGATTCGTTATTGTGTGGCTGGGAGTGGTGGGTTTAGTTATTTTGATGTTAGGGATCTGAATGACAAATGGATTCGTGTTTGGGTAAAAAAGGGAGCAATGATTGTCTTGCCTGCTGGAATTTATCATCGCTTTACCCTGGATTCTAACAATTATATCAAGGCTATGCGACTCTTTGTTGGTGATCCTGTCTGGACTCCTCACAACCGTCCCAACGATCATCTTCCCGCAAGGAAGGAGTATCTCAAAAATTTCGTGGAGAAGGAAGCTGGTAACCAATCCATTAATGCTGCAGCTTAA 651 41.17 MRVFINFIIVTISRNLHLQDPREEVIQAWYMDDSDEDQRLPHHLEPKQYLSLQQLDELGVLSWKLNADIYETDEELKKIRRDRNYSYMDFCEVCPEKLPNYDEKIKNFYEEHLHTDEEIRYCVAGSGGFSYFDVRDLNDKWIRVWVKKGAMIVLPAGIYHRFTLDSNNYIKAMRLFVGDPVWTPHNRPNDHLPARKEYLKNFVEKEAGNQSINAAA 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39633384 39635493 + Maker00031996 Lcy11g1580 647481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1580 216 FunFam 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 25 205 - -
Lcy11g1580 216 SUPERFAMILY RmlC-like cupins 27 202 IPR011051 -
Lcy11g1580 216 Hamap Acireductone dioxygenase [ADI1]. 26 192 IPR027496 GO:0016491(InterPro)|GO:0019509(InterPro)
Lcy11g1580 216 PANTHER ACIREDUCTONE DIOXYGENASE 25 209 IPR004313 GO:0006555(PANTHER)|GO:0010309(InterPro)|GO:0010309(PANTHER)
Lcy11g1580 216 Pfam ARD/ARD' family 27 184 IPR004313 GO:0010309(InterPro)
Lcy11g1580 216 Gene3D Jelly Rolls 14 205 IPR014710 -
Lcy11g1580 216 CDD cupin_ARD 52 184 IPR004313 GO:0010309(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1580 K08967 - - csv:101222292 385.571
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1580 Lcy-Chr11:39633384 Lcy13g0312 Lcy-Chr13:3383617 9.86E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g555 . . Bda03g00867 . . . . . . . . . Car06g01188 . Sed02g1341 . . Bhi01g00761 Tan10g0792 Cmetu06g0848 Lac12g2248 Hepe05g1585 . Lcy11g1580 . . . . . . . . . Cone7ag0277 . . Csa02g01124 . Cme06g00576 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00510 Cam05g0561 Cec05g0573 Cco05g0571 Clacu05g0558 Cmu05g0529 Cre05g0598 Lsi09g01292 Csa03g01292 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002489 2 2 1 1 1 2 3 2 2 1 2 2 2 2 2 2 2 3 3 2 2 2 2 2 2 2 2 3 2 2 60