Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1582 ATGAATCGTCCCCGCCGAGTCAAGGAGGAGTTTCTGGCGTCGAGTTCTTCATTTTCCGGCGGAGCGCCGCCGCCCACGGCGGCTCCTCAGCCGATGGAGAGGCTTCACGAGGCGGGTCCTCCGCCGTTTCTGACCAAAACATACGAAATCATCGAAGATACAACGACCAATCATATTGTCTCTTGGAGCAGAGGCAACAACAGCTTTGTCGTTTGGGATCCTCAATCCTTTTCCTTAAGCCTTCTTCCTAAATATTTCAAACACAGCAATTTCTCAAGCTTCGTCAGACAGCTAAATACCTATGGATTTAGAAAAGTGGATCCAGACAAGTGGGAGTTTGCTCATGAAGGATTCTTGAGAGGGCAGAAACATCTTCTGAAGCTGATCCGGAGGAGGAAAACGGCGCAACCGAACACTTCTCAGCAAGCTCCGGACCCTTGTGTCGAAGTCGGACGGTTCGGGCTAGACGGAGAGGTCGATCGGCTGCAGCGCGACAAGCAGGTTTTAATGGCGGAGCTAGTGAAGCTAAGGCAACAGCAGCAAACCACCAAAAGCTACCTCCAAACAATGGAACGCCGCCTGAAAAAGACAGAGACAAGACAGCAACTGATGATGAACTTCTTGGCAAGAGCAATTCAAAACCCCGATTTCATCCAACAATTGATCCACCAAAAAGACAAGCACAAAGAACTCGAAGAAGCCATCAACAGAAAACGAAGACGACACATCGACCAAGGCCAGCAGCCTCCTTGTGCCGACTTTGAAGAAGAGCAAGAAGAAGAAGAAGAGGCGCCCTTCGTGAACGACATCCACATGGATGTCGACTTGCTAGCCGTTGAAATGAACGAGAATGATCACTATGTCCCCAAAGAAGAAATGGCTGAAAAAGGAGATGAAATGGAAGAGAGTTTAGAGAGATCAGATCATTTGGATGAAGGGTTTTGGGAGAATTTGTTGAATGAGGCCAATGAAGATGGAGATGAATTGGTTGATCGATTTGGGTTTTTGAATTCTAATGATCTTAAATAG 1029 47.62 MNRPRRVKEEFLASSSSFSGGAPPPTAAPQPMERLHEAGPPPFLTKTYEIIEDTTTNHIVSWSRGNNSFVVWDPQSFSLSLLPKYFKHSNFSSFVRQLNTYGFRKVDPDKWEFAHEGFLRGQKHLLKLIRRRKTAQPNTSQQAPDPCVEVGRFGLDGEVDRLQRDKQVLMAELVKLRQQQQTTKSYLQTMERRLKKTETRQQLMMNFLARAIQNPDFIQQLIHQKDKHKELEEAINRKRRRHIDQGQQPPCADFEEEQEEEEEAPFVNDIHMDVDLLAVEMNENDHYVPKEEMAEKGDEMEESLERSDHLDEGFWENLLNEANEDGDELVDRFGFLNSNDLK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39640266 39644368 + Maker00031472 Lcy11g1582 647483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1582 342 Coils Coil 221 241 - -
Lcy11g1582 342 Coils Coil 159 179 - -
Lcy11g1582 342 MobiDBLite consensus disorder prediction 242 262 - -
Lcy11g1582 342 SMART hsfneu3 39 132 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g1582 342 MobiDBLite consensus disorder prediction 1 39 - -
Lcy11g1582 342 FunFam Heat shock transcription factor 1 36 133 - -
Lcy11g1582 342 SUPERFAMILY Winged helix DNA-binding domain 39 132 IPR036390 -
Lcy11g1582 342 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g1582 342 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g1582 342 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g1582 342 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g1582 342 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g1582 342 Gene3D - 35 134 IPR036388 -
Lcy11g1582 342 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 28 327 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1582 K09419 - - csv:101218269 485.337
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1582 Lcy-Chr11:39640266 Lcy13g2191 Lcy-Chr13:40850983 1.27E-79 dispersed
Lcy6g2241 Lcy-Chr6:47000504 Lcy11g1582 Lcy-Chr11:39640266 2.03E-59 transposed
Lcy11g1582 Lcy-Chr11:39640266 Lcy12g2165 Lcy-Chr12:42961742 1.69E-106 wgd
Lcy11g1582 Lcy-Chr11:39640266 Lcy3g1574 Lcy-Chr3:42849003 2.30E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g557 . . . Bda08g00255 . . . Bma05g01091 . . Cma06g01370 . Car06g01187 Car14g01574 Sed02g1342 . Cpe03g01464 Bhi01g00760 Tan10g0791 Cmetu06g1701 . Hepe05g1586 . Lcy11g1582 . . . . . . . . . . . Lsi05g01637 . . Cme06g00575 . . . . Bpe05g00882 . . . . . . . . . . . . . . . . . . . Cla05g00509 Cam05g0560 Cec05g0572 Cco05g0570 Clacu05g0557 Cmu05g0528 Cre05g0597 . Csa03g01291 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1582 . 40 240 HSF AT4G17750 60.6 3.8e-63 240.0
Lcy3g1574 . 51 286 HSF AT4G17750 51.4 4.3e-59 226.5
Lcy13g2191 . 43 243 HSF AT4G17750 55.0 9.6e-59 225.3
Lcy12g2165 . 43 245 HSF AT4G17750 54.8 1.6e-58 224.6
Lcy4g2241 . 114 317 HSF AT4G17750 51.6 4.8e-50 196.4
Lcy5g1803 . 13 192 HSF AT4G17750 50.3 3.6e-45 180.3
Lcy8g1607 . 59 157 HSF AT4G17750 70.7 2.6e-40 164.1
Lcy12g1687 . 18 140 HSF AT4G17750 61.0 1.1e-38 158.7
Lcy13g2088 . 20 118 HSF AT4G17750 71.7 1.1e-38 158.7
Lcy9g2093 . 20 118 HSF AT4G17750 69.7 3.2e-38 157.1
Lcy11g1582 . 41 245 HSF AT5G16820 57.5 1.0e-60 231.9
Lcy3g1574 . 52 259 HSF AT5G16820 57.9 1.1e-59 228.4
Lcy12g2165 . 44 249 HSF AT5G16820 56.5 1.4e-59 228.0
Lcy13g2191 . 44 242 HSF AT5G16820 52.7 1.3e-55 214.9
Lcy11g1801 . 17 213 HSF AT5G16820 50.7 5.5e-51 199.5
Lcy4g2241 . 115 299 HSF AT5G16820 53.9 1.3e-47 188.3
Lcy1g0248 . 9 191 HSF AT5G16820 50.8 2.5e-43 174.1
Lcy2g0812 . 11 178 HSF AT5G16820 50.5 1.8e-41 167.9
Lcy8g1607 . 60 153 HSF AT5G16820 78.7 2.2e-39 161.0
Lcy3g1574 . 40 255 HSF AT1G32330 53.5 5.0e-60 229.6
Lcy11g1582 . 29 230 HSF AT1G32330 54.5 8.5e-60 228.8
Lcy12g2165 . 16 229 HSF AT1G32330 51.1 1.8e-57 221.1
Lcy13g2191 . 32 225 HSF AT1G32330 53.9 8.2e-55 212.2
Lcy11g1801 . 15 191 HSF AT1G32330 50.5 3.7e-47 186.8
Lcy8g1607 . 58 153 HSF AT1G32330 75.0 4.4e-40 163.3
Lcy13g2088 . 20 117 HSF AT1G32330 71.4 7.0e-38 156.0
Lcy12g2165 . 44 264 HSF AT3G02990 54.4 2.3e-62 237.3
Lcy11g1582 . 41 244 HSF AT3G02990 57.1 8.8e-62 235.3
Lcy3g1574 . 52 269 HSF AT3G02990 54.7 4.8e-60 229.6
Lcy13g2191 . 44 243 HSF AT3G02990 52.7 1.9e-56 217.6
Lcy8g1607 . 60 153 HSF AT3G02990 76.6 1.6e-39 161.4
Lcy11g1582 . 29 240 HSF AT2G26150 58.1 3.3e-66 249.6
Lcy3g1574 . 40 254 HSF AT2G26150 57.9 7.4e-66 248.4
Lcy4g2241 . 98 317 HSF AT2G26150 53.8 9.4e-61 231.5
Lcy11g1801 . 17 213 HSF AT4G18880 51.5 2.2e-53 207.2
Lcy11g1801 . 3 467 HSF AT4G13980 51.7 2.7e-119 426.4
Lcy8g1607 . 51 158 HSF AT4G13980 67.6 1.2e-39 161.8
Lcy11g1582 . 29 221 HSF AT5G43840 53.9 1.8e-54 210.3
Lcy13g2191 . 32 235 HSF AT5G43840 52.9 2.0e-48 190.3
Lcy3g1574 . 12 366 HSF AT3G22830 50.1 4.7e-96 349.0
Lcy11g1582 . 29 339 HSF AT3G22830 53.5 1.7e-90 330.5
Lcy12g2165 . 32 344 HSF AT3G22830 52.1 2.4e-87 320.1
Lcy3g1574 . 39 341 HSF AT3G51910 53.2 7.1e-72 268.1
Lcy12g2165 . 32 324 HSF AT3G51910 53.2 6.7e-70 261.5
Lcy13g2191 . 32 248 HSF AT3G51910 52.5 7.2e-56 214.9
Lcy13g2191 . 32 231 HSF AT3G63350 52.9 6.5e-52 201.8
Lcy3g1574 . 53 241 HSF AT1G67970 51.3 7.8e-45 178.7
Lcy4g2241 . 109 318 HSF AT5G54070 54.0 6.9e-53 205.3
Lcy1g0992 . 76 376 HSF AT4G36990 52.3 2.0e-72 270.0
Lcy13g2088 . 17 115 HSF AT5G62020 66.7 4.3e-38 156.0
Lcy12g1687 . 41 361 HSF AT4G11660 54.7 2.2e-79 293.5
Lcy9g2093 . 16 122 HSF AT4G11660 72.9 6.0e-45 179.1
Lcy13g2088 . 16 119 HSF AT4G11660 73.1 3.9e-44 176.4
Lcy1g0992 . 76 174 HSF AT4G11660 73.7 1.3e-42 171.4
Lcy11g0537 . 13 111 HSF AT4G11660 69.7 9.3e-38 155.2
Lcy11g0537 . 3 215 HSF AT2G41690 53.0 2.3e-53 206.5
Lcy1g1909 . 7 220 HSF AT2G41690 52.1 7.4e-52 201.4
Lcy9g2093 . 1 338 HSF AT1G46264 51.8 2.6e-90 329.7
Lcy13g2088 . 19 378 HSF AT1G46264 51.2 7.2e-85 311.6
Lcy1g0992 . 78 272 HSF AT1G46264 50.7 1.4e-51 201.1
Lcy8g1607 . 52 152 HSF AT1G46264 70.3 3.9e-38 156.4
Lcy11g1801 . 9 108 HSF AT1G46264 70.0 5.6e-37 152.5
Lcy12g2165 . 22 146 HSF AT1G46264 57.9 1.6e-36 151.0
Lcy2g0812 . 10 300 HSF AT3G24520 52.1 1.6e-65 247.3
Lcy11g1582 . 40 240 HSF AT4G17750 60.6 3.8e-63 240.0
Lcy3g1574 . 51 286 HSF AT4G17750 51.4 4.3e-59 226.5
Lcy13g2191 . 43 243 HSF AT4G17750 55.0 9.6e-59 225.3
Lcy12g2165 . 43 245 HSF AT4G17750 54.8 1.6e-58 224.6
Lcy4g2241 . 114 317 HSF AT4G17750 51.6 4.8e-50 196.4
Lcy5g1803 . 13 192 HSF AT4G17750 50.3 3.6e-45 180.3
Lcy8g1607 . 59 157 HSF AT4G17750 70.7 2.6e-40 164.1
Lcy12g1687 . 18 140 HSF AT4G17750 61.0 1.1e-38 158.7
Lcy13g2088 . 20 118 HSF AT4G17750 71.7 1.1e-38 158.7
Lcy9g2093 . 20 118 HSF AT4G17750 69.7 3.2e-38 157.1
Lcy11g1582 . 41 245 HSF AT5G16820 57.5 1.0e-60 231.9
Lcy3g1574 . 52 259 HSF AT5G16820 57.9 1.1e-59 228.4
Lcy12g2165 . 44 249 HSF AT5G16820 56.5 1.4e-59 228.0
Lcy13g2191 . 44 242 HSF AT5G16820 52.7 1.3e-55 214.9
Lcy11g1801 . 17 213 HSF AT5G16820 50.7 5.5e-51 199.5
Lcy4g2241 . 115 299 HSF AT5G16820 53.9 1.3e-47 188.3
Lcy1g0248 . 9 191 HSF AT5G16820 50.8 2.5e-43 174.1
Lcy2g0812 . 11 178 HSF AT5G16820 50.5 1.8e-41 167.9
Lcy8g1607 . 60 153 HSF AT5G16820 78.7 2.2e-39 161.0
Lcy3g1574 . 40 255 HSF AT1G32330 53.5 5.0e-60 229.6
Lcy11g1582 . 29 230 HSF AT1G32330 54.5 8.5e-60 228.8
Lcy12g2165 . 16 229 HSF AT1G32330 51.1 1.8e-57 221.1
Lcy13g2191 . 32 225 HSF AT1G32330 53.9 8.2e-55 212.2
Lcy11g1801 . 15 191 HSF AT1G32330 50.5 3.7e-47 186.8
Lcy8g1607 . 58 153 HSF AT1G32330 75.0 4.4e-40 163.3
Lcy13g2088 . 20 117 HSF AT1G32330 71.4 7.0e-38 156.0
Lcy12g2165 . 44 264 HSF AT3G02990 54.4 2.3e-62 237.3
Lcy11g1582 . 41 244 HSF AT3G02990 57.1 8.8e-62 235.3
Lcy3g1574 . 52 269 HSF AT3G02990 54.7 4.8e-60 229.6
Lcy13g2191 . 44 243 HSF AT3G02990 52.7 1.9e-56 217.6
Lcy8g1607 . 60 153 HSF AT3G02990 76.6 1.6e-39 161.4
Lcy11g1582 . 29 240 HSF AT2G26150 58.1 3.3e-66 249.6
Lcy3g1574 . 40 254 HSF AT2G26150 57.9 7.4e-66 248.4
Lcy4g2241 . 98 317 HSF AT2G26150 53.8 9.4e-61 231.5
Lcy11g1801 . 17 213 HSF AT4G18880 51.5 2.2e-53 207.2
Lcy11g1801 . 3 467 HSF AT4G13980 51.7 2.7e-119 426.4
Lcy8g1607 . 51 158 HSF AT4G13980 67.6 1.2e-39 161.8
Lcy11g1582 . 29 221 HSF AT5G43840 53.9 1.8e-54 210.3
Lcy13g2191 . 32 235 HSF AT5G43840 52.9 2.0e-48 190.3
Lcy3g1574 . 12 366 HSF AT3G22830 50.1 4.7e-96 349.0
Lcy11g1582 . 29 339 HSF AT3G22830 53.5 1.7e-90 330.5
Lcy12g2165 . 32 344 HSF AT3G22830 52.1 2.4e-87 320.1
Lcy3g1574 . 39 341 HSF AT3G51910 53.2 7.1e-72 268.1
Lcy12g2165 . 32 324 HSF AT3G51910 53.2 6.7e-70 261.5
Lcy13g2191 . 32 248 HSF AT3G51910 52.5 7.2e-56 214.9
Lcy13g2191 . 32 231 HSF AT3G63350 52.9 6.5e-52 201.8
Lcy3g1574 . 53 241 HSF AT1G67970 51.3 7.8e-45 178.7
Lcy4g2241 . 109 318 HSF AT5G54070 54.0 6.9e-53 205.3
Lcy1g0992 . 76 376 HSF AT4G36990 52.3 2.0e-72 270.0
Lcy13g2088 . 17 115 HSF AT5G62020 66.7 4.3e-38 156.0
Lcy12g1687 . 41 361 HSF AT4G11660 54.7 2.2e-79 293.5
Lcy9g2093 . 16 122 HSF AT4G11660 72.9 6.0e-45 179.1
Lcy13g2088 . 16 119 HSF AT4G11660 73.1 3.9e-44 176.4
Lcy1g0992 . 76 174 HSF AT4G11660 73.7 1.3e-42 171.4
Lcy11g0537 . 13 111 HSF AT4G11660 69.7 9.3e-38 155.2
Lcy11g0537 . 3 215 HSF AT2G41690 53.0 2.3e-53 206.5
Lcy1g1909 . 7 220 HSF AT2G41690 52.1 7.4e-52 201.4
Lcy9g2093 . 1 338 HSF AT1G46264 51.8 2.6e-90 329.7
Lcy13g2088 . 19 378 HSF AT1G46264 51.2 7.2e-85 311.6
Lcy1g0992 . 78 272 HSF AT1G46264 50.7 1.4e-51 201.1
Lcy8g1607 . 52 152 HSF AT1G46264 70.3 3.9e-38 156.4
Lcy11g1801 . 9 108 HSF AT1G46264 70.0 5.6e-37 152.5
Lcy12g2165 . 22 146 HSF AT1G46264 57.9 1.6e-36 151.0
Lcy2g0812 . 10 300 HSF AT3G24520 52.1 1.6e-65 247.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011933 1 1 0 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 2 1 1 1 1 0 1 1 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19145 None None None None Lcy TF