Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1588 ATGCAGCTTCTTAACTCTGAAGAAACGGTAGCCGACTCCTCGGAAGCCGGCCCTGTGGAGGCAGGTAACTTGAAAGCCTCTAAGTTGGCTCTGTTTGAGGATGATAATGGTAATGATGCAGATGATTTGGTTCTTGATGTATCGGGGAGGAACTTGGATTCCCACTTCTTGGAGGGTTCCAACAGCTCAGTGAAGGGTATGTACGTATTCCGGAATGTGTTCAATTTGATCCCGAAGTCAGTCGGCGACTTTAGAGAATTGAGAATGTTGAAGTTCTTTGGAAATGAGATTAATTTGTTTCCGCCGGAGTTGAAGAACTTTGTGGGGTTAGAATGCTTGCAGGTGAAGTTATCGTCACCGGGTTTTGGTGGTTTATCATTACACAAACTGAAGGGTCTGAAGGAGCTCGAGCTATCGAAGATTCCTCCTAAACCTTCCTCGTTTCCGATTCTTAGTGAGATCGCTGGCCTTAAGTGCTTGACTAAGCTCTCTGTTTGTCACTTTTCTATTAGATTTCTTCCGCCTGAAATTGGCTGCCTGAATAGCTTGGAGTATCTAGATCTCTCATTTAATAAGATGAAGCACCTTCCAGCAGAAATAGGCTACTTGAATGCATTGATATCCTTGAGAGTTGCCAATAACAAATTGGTGGAACTACCTCCAGCTCTTTCCTCCCTGCAAAAGTTGGAGAACTTGGACCTATCAAGAAATTGTGGAGAAGATACAGCTAATGAAGAATTGATTAGTTCTACTGTTGAAATGGATGTTTATGAAGCCACCATTCCGGACAATGGTGATAATTTTCCCCATAAAGGTACTCGGAATCTCTCATCAAACCTACTAATGGGATCTTCAACGAATAGTAGATCTTTTGCATCTCGAAGATCAGGTAAGCGATGGCGGAGACGACATTATTTACAGCAGAAAGCTCGCCAAGAACGTTTGAATAGCAGCAGGAAGTGGAAAGGAGTAGATCATCATCCTGAAGTGAAGATCCATGAAAATATCGAACTTGGGAGGCTTGACACTTCCCTTACTTCTGAAACTACAGTCGAAGATTCATCAGTTATTGAGGAGTTATATGATGGTAAAGAAACTTGCCAAGAAGAAGCTGAAAGGGAGAATCTTATCAAGACCCATGAGAATGACAATTTTGATCCCAAAAAGGAACTTTCTGTGGAAGATTGCTCAAGTATCTGTGTTAGTGCTGTAGAAACAATGACAAGGGACAAACATGAATGTTGTGAGCCTAGTGAGGCTTTGCCGTCAACAGGAAATGGAGCACATGACCAAGAAGGGTCATCTTCCCAAATATCAAATGATAATGCCAAGTTGAAAAGATATTCTGAGAGGGAACTTGATAATCCTAAACCTTGCAAGTCAAGAAAGGCAGCTGAAGATAGCTCAAGTTTATCTTGCAAGTACAATAGTATTTCATTCTGCAGCGTTGAAGATCATCTACCTGATGGATTTTATGATGCAGGGCGTGATCGTCCCTTCATGCCATTAAGGAATTATGAGCAAAATTTCCATCTTGAGTCACGTGAAGTCATTCTTGTCAACAGGAATCAAGATGAAGTATTAGACTCTACAGTAGTATCTGCCAAGTCATTGGTGCTCCGTGTAAAGCAGATTAACCACCTAACCCAAGAAAGGCATGATGTTCTTGATGACGTGCATATTGCACAATTACTTGCTTTATTTGTATCTGATCATTTTGGAGGCAGTGATAGAAGTGCAATGGTTGAGAAAACACGGAAAGCTGTTTCTGGTTCAAAGTACCAGAAGCCTTTTGTCTGCACCTGCTCAACTGGAAACCGGGATAATCTTACTGTGTCCACCAAATTAATGGTGGATAATTATGAGGATATTCTTTTTACTGATATCTGTGAGAAGTCTCTTCGTGCTATTAAGGCTAGTCGAAATTCCATCATAGTTCCTCTAGGAGCTCTGCAGTTTGGTGTGTGCAGACATAGAGCGGTGCTTCTTAAGTATTTGTGTGACCGCATGGAGCCTCCAGTACCTTGTGAGCTTGTGAGAGGTTACTTGGATTTCTTGCCTCATGCCTGGAACGTGATCTTAGTGAAAAGAGGTAATGATTTGGTTCGAATGGTTGTTGATGCATGTCGACCAAATGATATACGAGAAGAAGAAGATCCTGAGTATTTTTGCAGGTATATTCCTCTCAGTCGTGCCAAACTTCCTATTTCTTTTGGAATGACACCCAGTCCAGGGTTTTCTTTTCCGTCTCTTTCCAATTGTGATGAGATTGAGAAGGCACCTTCTAGTTCTGTGATAAAGTGCAAACTTGGGTCGGTTGAGGCTGCAGCAAAGTTACGGAGGCTTGAAGTTTGTGAATCTTCATTTGATGCGATAAGGAACTTTGAATACAGTTGCTTAGGTGAAGTTAGAATTCTGGGTACTTTGAAACACTCCTGCATAGTACAGATGTACGGACATCAGATATCCTCTGAATGGATTCCTTCTGAGGATGGAAAACCAAAGCGTCGGTTACTTAGGTCTGCAATTTTTTTAGAGCATGTTAAAGGGGGATCTTTGAAGAGGTACATGGACAAGTTGTACAAAGCTGGGAAAAAACACGTTCCAATGGATCTGGCATTGCATGTAGCTCGAGATGTTGCAAGTGCTTTGGTAGAGCTGCATTCAAAACACATCATTCATCGTGACATCAAAAGTGAAAATATTTTGATAGATTTTGATGAAAAACCTAATGGAGTTCCCATCATTAAGCTGTGTGATTTTGATAGAGCAGTGCCCCTTCGATCTTTATTGCACACTTGTTGCATTGCTCATACTGGAATACCTCCTCCTGATGTTTGTGTTGGAACACCTCGATGGATGGCTCCAGAAGTTCTACGAACAATGCATACACCAAAAGTTTATGGACTGGAACCTGCTAGATTCATGGCACTACCAAACATGGGTGTGGCTGAAGATGTTCTGTTAGCAAACTGGATGCTAGGAATTGAAACTTTGTTGGAACTACAGAAGGAATTCATAATTCCGGCAAAGGGGTGTGGGAGAAGTGGAGGGGAAAAAAGGCGTGTAAGGCCTTCATTTTGTATTACTTATGTGAGGAAAAGAACCAATAATGTGAATAGTGGTGAGGAAGCAGCCCTGAATTATGAAATATGGGGCTATAGCGGTGAGGTGATAGCCCTGGAAGTGGATATTTGGTCGTTTGGATGTTTGTTATTGGAACTGTTGACCTTGCAAATTCCGTTCTTGGGGCTGACAGAATTGCAGATATTTGATCAACTTCAGATGGGTAAACGACCAGAATTGACAGGTGAGCTTGAGGCATTGGGGTCGATGAAGGAAAGCTCAATGTCTCAATCTGTTCAAGAATCAGATGGTTCAAAGAAAGAACAAGAAACTACAGCATTCTTGATCGACTTGTTTCGCAAGTGTACTCAGGAAAACCCAAACGACCGACCAACAGCTAAAGAACTTCATGAAATTCTGCTCGAGCACACAGCCAAAGTTAAATCTTCACAAAAACTAGCTACATTAAATTAA 3540 41.72 MQLLNSEETVADSSEAGPVEAGNLKASKLALFEDDNGNDADDLVLDVSGRNLDSHFLEGSNSSVKGMYVFRNVFNLIPKSVGDFRELRMLKFFGNEINLFPPELKNFVGLECLQVKLSSPGFGGLSLHKLKGLKELELSKIPPKPSSFPILSEIAGLKCLTKLSVCHFSIRFLPPEIGCLNSLEYLDLSFNKMKHLPAEIGYLNALISLRVANNKLVELPPALSSLQKLENLDLSRNCGEDTANEELISSTVEMDVYEATIPDNGDNFPHKGTRNLSSNLLMGSSTNSRSFASRRSGKRWRRRHYLQQKARQERLNSSRKWKGVDHHPEVKIHENIELGRLDTSLTSETTVEDSSVIEELYDGKETCQEEAERENLIKTHENDNFDPKKELSVEDCSSICVSAVETMTRDKHECCEPSEALPSTGNGAHDQEGSSSQISNDNAKLKRYSERELDNPKPCKSRKAAEDSSSLSCKYNSISFCSVEDHLPDGFYDAGRDRPFMPLRNYEQNFHLESREVILVNRNQDEVLDSTVVSAKSLVLRVKQINHLTQERHDVLDDVHIAQLLALFVSDHFGGSDRSAMVEKTRKAVSGSKYQKPFVCTCSTGNRDNLTVSTKLMVDNYEDILFTDICEKSLRAIKASRNSIIVPLGALQFGVCRHRAVLLKYLCDRMEPPVPCELVRGYLDFLPHAWNVILVKRGNDLVRMVVDACRPNDIREEEDPEYFCRYIPLSRAKLPISFGMTPSPGFSFPSLSNCDEIEKAPSSSVIKCKLGSVEAAAKLRRLEVCESSFDAIRNFEYSCLGEVRILGTLKHSCIVQMYGHQISSEWIPSEDGKPKRRLLRSAIFLEHVKGGSLKRYMDKLYKAGKKHVPMDLALHVARDVASALVELHSKHIIHRDIKSENILIDFDEKPNGVPIIKLCDFDRAVPLRSLLHTCCIAHTGIPPPDVCVGTPRWMAPEVLRTMHTPKVYGLEPARFMALPNMGVAEDVLLANWMLGIETLLELQKEFIIPAKGCGRSGGEKRRVRPSFCITYVRKRTNNVNSGEEAALNYEIWGYSGEVIALEVDIWSFGCLLLELLTLQIPFLGLTELQIFDQLQMGKRPELTGELEALGSMKESSMSQSVQESDGSKKEQETTAFLIDLFRKCTQENPNDRPTAKELHEILLEHTAKVKSSQKLATLN 1179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39677117 39686998 + Maker00032173 Lcy11g1588 647489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1588 1179 MobiDBLite consensus disorder prediction 424 442 - -
Lcy11g1588 1179 SUPERFAMILY Protein kinase-like (PK-like) 1058 1166 IPR011009 -
Lcy11g1588 1179 ProSiteProfiles Protein kinase domain profile. 751 1162 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1588 1179 SMART serkin_6 751 1163 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1588 1179 Gene3D Transferase(Phosphotransferase) domain 1 759 968 - -
Lcy11g1588 1179 Pfam Protein kinase domain 797 964 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1588 1179 MobiDBLite consensus disorder prediction 263 303 - -
Lcy11g1588 1179 Pfam Protein tyrosine and serine/threonine kinase 1060 1162 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1588 1179 Pfam Ethylene-responsive protein kinase Le-CTR1 630 707 - -
Lcy11g1588 1179 FunFam Leucine-rich repeat protein kinase family protein 797 976 - -
Lcy11g1588 1179 Gene3D Ribonuclease Inhibitor 43 286 IPR032675 -
Lcy11g1588 1179 SUPERFAMILY RNI-like 61 247 - -
Lcy11g1588 1179 SUPERFAMILY Protein kinase-like (PK-like) 764 962 IPR011009 -
Lcy11g1588 1179 Gene3D Transferase(Phosphotransferase) domain 1 1031 1177 - -
Lcy11g1588 1179 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 1055 1168 - GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0018107(PANTHER)
Lcy11g1588 1179 ProSiteProfiles Leucine-rich repeat profile. 182 203 IPR001611 GO:0005515(InterPro)
Lcy11g1588 1179 SMART LRR_typ_2 180 201 IPR003591 -
Lcy11g1588 1179 SMART LRR_typ_2 203 226 IPR003591 -
Lcy11g1588 1179 MobiDBLite consensus disorder prediction 270 293 - -
Lcy11g1588 1179 MobiDBLite consensus disorder prediction 415 442 - -
Lcy11g1588 1179 ProSitePatterns Serine/Threonine protein kinases active-site signature. 892 904 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1588 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1588 Lcy-Chr11:39677117 Lcy4g1024 Lcy-Chr4:18367462 2.47E-10 dispersed
Lcy11g1588 Lcy-Chr11:39677117 Lcy5g2226 Lcy-Chr5:45283082 2.58E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65464 None None None None Lcy PK