Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1589 ATGCCCGTACGGCAAATGAAAGAGAGCTCCGAGCAGCACCTTGTAATCAAAACCCACTTGCAGAACACTGTTCAAAAAGCTCCAAAATCAACCCAAAATGGCAAAGGCCCGCCGAATCTGGAACAGCAAAACATCAAATCTCGAAACCCATCTTCTCCTCCGAGCAAAAACAGAGGCCGGAGAAGGAGCAGAGGCGGCCGGAAATCCGACCAGGGAGAAGTCTGTATGAGGCCCAGTTCTCGGCCCTGCACGGTGGCGCTTAAACCCGACGGACCGGAGATTACAGCTGGAGCTCTAGTGGCGACTGTTAATCCTAATCCAAATGGTGGAAACATTTGTGGGATGGAAATGGGTTTTCGAAATTCAAGCAAGTCTGTGAGTTTTGCCCCAAGGCCTGGATTCGGACAAGTTGGGACAAAGTGTATTGTAAAAGCAAACCATTTCTTTGCAGAGTTACCAGACAAAGATTTGAATCAATATGATGTTACAATTACTCCTGAAGTGCCATCAAGAACTGTTAACAGAGCCATCATGGCTGAATTGGTGAGATTATACAGAGAATCTGATCTGGGAAAAAGATTACCAGCTTATGATGGCAGAAAGAGTCTGTATACAGCTGGTGAGCTTCCTTTTGTTTGGAAAGAGTTTAACATCAAGCTTGTGGATGAAGAAGATGGAGTCAGTGGTCCCAAGAGGGAGAGGGAATATAAAGTGGTCATTAAGTTTGTTGCACGTGCAAACTTACACCATTTGGGTCAGTTTCTCGCGGGTAAGCGCGCGGATGCTCCACAAGAAGCTCTTCAAATACTGGACATTGTATTGAGAGAGCTGTCATCCAAAAGGTACTGTCCTATCGGTAGATCCTTCTTTTCTCCTGATATTAGATCACCTCAGCGGCTCGGTGATGGGCTCGAATCATGGTGTGGTTTTTATCAGAGTATAAGACCTACTCAGATGGGACTGTCTCTTAACATTGATATGGCTTCAGCTGCATTTATCGAGCCTCTCCCTGTCCTTGAGTTTGTTGCTCAGCTTCTAGGTAAAGATGTTTTGTCCCGGCCATTGTCTGATTCGGATCGCGTAAAGATTAAAAAGGCTCTTAGAGGGGTGAAAGTTGAAGTAACGCACCGGGGTAATGTAAGGCGGAAGTATCGAGTTTCGGGTCTGACATCACAGCCTACAAGAGAACTAGTGTTTCCTGTTGATGACAACTCAACCATGAAGTCAGTTGTTGAATACTTCCAAGAGATGTATGGCTTCACCATTCAACACGCGCATCTCCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGCAAATTATTTACCAATGGAGGCCTGCAAAATTGTAGGGGGGCAAAGATATACAAAGAGATTGAACGAGAAGCAAATAACCGCACTTCTAAAAGTCACATGTCAAAGACCTAGGGATCGAGAAAATGACATTTTGCAGTTTGTTCTCTTGTGGCAGACTGTTCAACATAATGCCTATGACAATGATCCTTATGCAAAGGAGTTTGGGATTAAAATCAGTGAAAAGCTGGCTTCTGTTGAGGCTAGAATTCTTCCTCCTCCCTGGCTGAAATATCATGATACTGGAAAAGAGAAGGATTGCTTGCCTCAAGTCGGTCAATGGAATATGATGAACAAGAAAATGATTAATGGAATGACCGTTAACCGGTGGGCATGTATCAACTTCTCTAGGAGTGTGCAAGAGAGCGTTGCTCGTGGGTTTTGTTCTGAACTTGCTCAAATGTGTCAAGTGTCTGGAATGGAATTCAATCCAGAACCAGTTATTCCAATATACAATGCAAGGCCAGAACAGGTAGAGAAAGCTTTGAAGCATGTTTATCATGCTTCGATGAACAAGACAAAAGGAAAAGAGTTAGAGCTTTTATTAGCTATTTTACCTGACAATAATGGTTCACTTTACGGTGATCTTAAGCGAATTTGTGAAACTGATCTTGGTTTAATATCACAATGCTGTCTTACAAAACACGTGTTCAAGATTAGTAAGCAGTACCTTGCTAACGTTTCACTGAAGATCAATGTCAAGATGGGTGGTAGGAACACTGTTCTTCTAGATGCCATCAGCTGCAGGATACCGCTTGTGAGTGACATACCAACGATAATATTTGGAGCGGACGTGACCCATCCAGAGAACGGCGAAGATTCCAGCCCTTCAATAGCTGCTGTTGTAGCCTCTCAGGATTGGCCTGAAGTGACGAAATATGCTGGACTAGTATGTGCTCAGGCTCATAGACAAGAACTTATACAAGACTTGTATAAAACTTGGCAGGATCCCGTCCGTGGCACTGTCAGTGGTGGCATGATCAGGGATCTTCTGATTTCCTTTAGGAAAGCAACAGGGCAAAAGCCTCTAAGAATAATATTTTACAGGGATGGCGTAAGTGAAGGACAATTCTATCAAGTATTACTTTATGAGTTGGATGCAATCAGGAAGGCATGTGCATCTTTAGAGCCGAATTACCAACCACCCGTAACGTTCATTGTTGTACAAAAACGACACCACACCCGATTGTTTGCCAACAACTACAGAGATCGAAGTAGCACAGACAAGAGTGGAAACATTTTGCCTGGTACTGTTGTTGACTCCAAAATATGCCACCCAACAGAATTTGATTTCTATCTCTGTAGCCATGCTGGAATCCAGGGTACAAGTCGGCCAGCTCACTACCATGTTCTTTGGGATGAAAACAATTTTACTGCAGATGGAATTCAGTCGTTAACGAACAACCTTTGCTACACATATGCCAGGTGTACACGTTCGGTTTCTGTTGTTCCTCCAGCATACTATGCACACTTAGCAGCATTCCGAGCTCGATTCTACATGGAACCAGAGATGCAAGAGAATGGCTCGGGTGGTCGTTCTGCCAAGAGTACACGCGCTACCGGAGAGACTGGGGTTCGTCCTTTGCCAGCTCTAAAGGAAAATGTGAAGAGAGTAATGTTCTACTGTTAG 2979 44.14 MPVRQMKESSEQHLVIKTHLQNTVQKAPKSTQNGKGPPNLEQQNIKSRNPSSPPSKNRGRRRSRGGRKSDQGEVCMRPSSRPCTVALKPDGPEITAGALVATVNPNPNGGNICGMEMGFRNSSKSVSFAPRPGFGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVPSRTVNRAIMAELVRLYRESDLGKRLPAYDGRKSLYTAGELPFVWKEFNIKLVDEEDGVSGPKREREYKVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRYCPIGRSFFSPDIRSPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVLEFVAQLLGKDVLSRPLSDSDRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPMEACKIVGGQRYTKRLNEKQITALLKVTCQRPRDRENDILQFVLLWQTVQHNAYDNDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQESVARGFCSELAQMCQVSGMEFNPEPVIPIYNARPEQVEKALKHVYHASMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNYRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQENGSGGRSAKSTRATGETGVRPLPALKENVKRVMFYC 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39701497 39710033 - Maker00031715 Lcy11g1589 647490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1589 992 Pfam Piwi domain 631 950 IPR003165 GO:0003676(InterPro)
Lcy11g1589 992 SMART Piwi_a_2 630 951 IPR003165 GO:0003676(InterPro)
Lcy11g1589 992 Pfam Argonaute linker 1 domain 284 334 IPR014811 -
Lcy11g1589 992 SMART DUF1785_2 283 335 IPR014811 -
Lcy11g1589 992 CDD PAZ_argonaute_like 335 449 - -
Lcy11g1589 992 SUPERFAMILY Ribonuclease H-like 618 951 IPR012337 -
Lcy11g1589 992 Pfam Argonaute linker 2 domain 477 528 IPR032472 -
Lcy11g1589 992 Pfam PAZ domain 362 466 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lcy11g1589 992 Gene3D - 699 992 IPR036397 GO:0003676(InterPro)
Lcy11g1589 992 MobiDBLite consensus disorder prediction 955 974 - -
Lcy11g1589 992 Pfam N-terminal domain of argonaute 140 274 IPR032474 -
Lcy11g1589 992 FunFam protein argonaute 10-like 699 992 - -
Lcy11g1589 992 Gene3D paz domain 329 454 - -
Lcy11g1589 992 ProSiteProfiles PAZ domain profile. 337 450 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lcy11g1589 992 ProSiteProfiles Piwi domain profile. 630 951 IPR003165 GO:0003676(InterPro)
Lcy11g1589 992 FunFam Protein argonaute-2 329 455 - -
Lcy11g1589 992 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 131 957 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Lcy11g1589 992 CDD Piwi_ago-like 500 950 IPR045246 -
Lcy11g1589 992 SUPERFAMILY PAZ domain 330 485 IPR036085 GO:0005515(InterPro)
Lcy11g1589 992 MobiDBLite consensus disorder prediction 21 54 - -
Lcy11g1589 992 MobiDBLite consensus disorder prediction 21 84 - -
Lcy11g1589 992 Gene3D - 520 693 - -
Lcy11g1589 992 FunFam Argonaute 10 520 693 - -
Lcy11g1589 992 SMART PAZ_2_a_3 340 472 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lcy11g1589 992 Pfam Mid domain of argonaute 539 616 IPR032473 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1589 Lcy-Chr11:39701497 Lcy5g2573 Lcy-Chr5:48432559 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1589 K11593 - csv:101221352 1905.18