Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1600 ATGGACCCAGGGCCCCGGCCCACGCCCGCGGCAGCCCCGCCGTCAACCGGCGCTATCCTTCTCGGAAAGTATCGCTTGGGCCGCCTTCTCGGCCGCGGCAGCTTCGCCAAAGTCTACCAAGCAGTTTCCTTAACCGACAACTCCACTGTCGCCGTTAAAATCATCGACAAATCCAAAACCGTCGGCCCCGCCCTCGAACGCTGCATAATCCGGGAGGTCGCCGCCATGCGCCGCCTCGATCACCCAAACATCCTCAAAATCCACGAAGTCATGGCCACAAAGTCCAAAATCTACCTGGTGGTGGAATTCGCTGCCGGCGGCGAACTCTTCGCCAAAATCTCCCGGCGTGGACGGTTCACCGAAACCGTCTCTCGCCGGTACTTCCAACAACTCGTTTCAGCCCTCAAATTCTGCCACGAAAACGGCGTCGTCCACCGCGATGTGAAGCCGCAGAATCTTCTGCTAGACGAACAGGGCAATTTGAAAATCTCCGATTTCGGACTCTCTGCTTTACCCGAACAGCTCAAAGACGGGTTGTTGCTCCAAACGGCTTGCGGAACTCCGGCGTACTCCGCACCTGAGGTCATGCTCCGCCGCGGCGGCGGATACGACGGCGCAAAGGCCGACGCCTGGTCCTGTGGAGTGATTTTATTCGTGTTACTCTGTGGATTCCTCCCTTTCGACGACAGTAATCTCGCGGCGATGTACAAGAAAATCCACCGGCGGGATTTTCAAATCCCCAATTGGATATCGAAGCCGGTCCGGTTCCTAATTTATCACCTCCTCGATCCGAATCCGAAAACGAGGATGAGCATTGAGGCGCTAATGCAAAACCCTTGGTTCAAGAAATCGCTGCAACAGAAACAGAGTAACGAGAGTCTGTTGCAATCGATGAGGGACTATCGATTGGGGAAGGAGAGGGGAATAGGGGAAATGAATGCGTTCGATATAATTTCGATGTCGTCGGGGTTGGATCTGTCTGGGCTGTTTGAGACGGCGGAGAAGAGGGCGGAGAGGAGGTTCACGGCGAGGGCGACGGTGAAGGAGGTGGAAGAGAGGGTGAGGGAGATCGGCGGGGAGTTGGGGTATGAGATGGAGGAGGCGGCGGCGAAGGGAGGGGCGATCGGAATGTGGAAGGGGAGGGTGGTGGTGGTAGTGGAAGTGGTGGAGGTGGCGGCGGCGAGAGTGACGATGGTGGAGGTGAGGGTAGTGAAAGGAGGAGAGGAGTTTGAAGAGCTCCATTGGAGGGGTTTGGAAGGTAAGCTTGAAGGATTTGCAGTTCCATGGGAGAGGAAATGTAATCTGTGA 1308 56.35 MDPGPRPTPAAAPPSTGAILLGKYRLGRLLGRGSFAKVYQAVSLTDNSTVAVKIIDKSKTVGPALERCIIREVAAMRRLDHPNILKIHEVMATKSKIYLVVEFAAGGELFAKISRRGRFTETVSRRYFQQLVSALKFCHENGVVHRDVKPQNLLLDEQGNLKISDFGLSALPEQLKDGLLLQTACGTPAYSAPEVMLRRGGGYDGAKADAWSCGVILFVLLCGFLPFDDSNLAAMYKKIHRRDFQIPNWISKPVRFLIYHLLDPNPKTRMSIEALMQNPWFKKSLQQKQSNESLLQSMRDYRLGKERGIGEMNAFDIISMSSGLDLSGLFETAEKRAERRFTARATVKEVEERVREIGGELGYEMEEAAAKGGAIGMWKGRVVVVVEVVEVAAARVTMVEVRVVKGGEEFEELHWRGLEGKLEGFAVPWERKCNL 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39858277 39859584 + Maker00031998 Lcy11g1600 647501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1600 435 Pfam NAF domain 312 365 IPR004041 GO:0007165(InterPro)
Lcy11g1600 435 SMART serkin_6 24 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1600 435 SUPERFAMILY Protein kinase-like (PK-like) 20 293 IPR011009 -
Lcy11g1600 435 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165(InterPro)
Lcy11g1600 435 Pfam Protein kinase domain 24 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1600 435 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1600 435 Gene3D Transferase(Phosphotransferase) domain 1 106 304 - -
Lcy11g1600 435 FunFam Non-specific serine/threonine protein kinase 15 305 - -
Lcy11g1600 435 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Lcy11g1600 435 FunFam Aurora kinase A 17 107 - -
Lcy11g1600 435 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524(InterPro)
Lcy11g1600 435 CDD CIPK_C 313 419 - -
Lcy11g1600 435 Gene3D Kinase associated domain 1, KA1 308 426 - -
Lcy11g1600 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1600 435 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 19 402 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1600 Lcy-Chr11:39858277 Lcy8g1696 Lcy-Chr8:43538302 4.57E-115 dispersed
Lcy8g2106 Lcy-Chr8:47250171 Lcy11g1600 Lcy-Chr11:39858277 3.14E-13 dispersed
Lcy1g1626 Lcy-Chr1:16608023 Lcy11g1600 Lcy-Chr11:39858277 6.43E-07 transposed
Lcy11g1600 Lcy-Chr11:39858277 Lcy13g0324 Lcy-Chr13:3526403 9.60E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65465 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1600 K12761 - csv:101217555 663.685