Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1600 | ATGGACCCAGGGCCCCGGCCCACGCCCGCGGCAGCCCCGCCGTCAACCGGCGCTATCCTTCTCGGAAAGTATCGCTTGGGCCGCCTTCTCGGCCGCGGCAGCTTCGCCAAAGTCTACCAAGCAGTTTCCTTAACCGACAACTCCACTGTCGCCGTTAAAATCATCGACAAATCCAAAACCGTCGGCCCCGCCCTCGAACGCTGCATAATCCGGGAGGTCGCCGCCATGCGCCGCCTCGATCACCCAAACATCCTCAAAATCCACGAAGTCATGGCCACAAAGTCCAAAATCTACCTGGTGGTGGAATTCGCTGCCGGCGGCGAACTCTTCGCCAAAATCTCCCGGCGTGGACGGTTCACCGAAACCGTCTCTCGCCGGTACTTCCAACAACTCGTTTCAGCCCTCAAATTCTGCCACGAAAACGGCGTCGTCCACCGCGATGTGAAGCCGCAGAATCTTCTGCTAGACGAACAGGGCAATTTGAAAATCTCCGATTTCGGACTCTCTGCTTTACCCGAACAGCTCAAAGACGGGTTGTTGCTCCAAACGGCTTGCGGAACTCCGGCGTACTCCGCACCTGAGGTCATGCTCCGCCGCGGCGGCGGATACGACGGCGCAAAGGCCGACGCCTGGTCCTGTGGAGTGATTTTATTCGTGTTACTCTGTGGATTCCTCCCTTTCGACGACAGTAATCTCGCGGCGATGTACAAGAAAATCCACCGGCGGGATTTTCAAATCCCCAATTGGATATCGAAGCCGGTCCGGTTCCTAATTTATCACCTCCTCGATCCGAATCCGAAAACGAGGATGAGCATTGAGGCGCTAATGCAAAACCCTTGGTTCAAGAAATCGCTGCAACAGAAACAGAGTAACGAGAGTCTGTTGCAATCGATGAGGGACTATCGATTGGGGAAGGAGAGGGGAATAGGGGAAATGAATGCGTTCGATATAATTTCGATGTCGTCGGGGTTGGATCTGTCTGGGCTGTTTGAGACGGCGGAGAAGAGGGCGGAGAGGAGGTTCACGGCGAGGGCGACGGTGAAGGAGGTGGAAGAGAGGGTGAGGGAGATCGGCGGGGAGTTGGGGTATGAGATGGAGGAGGCGGCGGCGAAGGGAGGGGCGATCGGAATGTGGAAGGGGAGGGTGGTGGTGGTAGTGGAAGTGGTGGAGGTGGCGGCGGCGAGAGTGACGATGGTGGAGGTGAGGGTAGTGAAAGGAGGAGAGGAGTTTGAAGAGCTCCATTGGAGGGGTTTGGAAGGTAAGCTTGAAGGATTTGCAGTTCCATGGGAGAGGAAATGTAATCTGTGA | 1308 | 56.35 | MDPGPRPTPAAAPPSTGAILLGKYRLGRLLGRGSFAKVYQAVSLTDNSTVAVKIIDKSKTVGPALERCIIREVAAMRRLDHPNILKIHEVMATKSKIYLVVEFAAGGELFAKISRRGRFTETVSRRYFQQLVSALKFCHENGVVHRDVKPQNLLLDEQGNLKISDFGLSALPEQLKDGLLLQTACGTPAYSAPEVMLRRGGGYDGAKADAWSCGVILFVLLCGFLPFDDSNLAAMYKKIHRRDFQIPNWISKPVRFLIYHLLDPNPKTRMSIEALMQNPWFKKSLQQKQSNESLLQSMRDYRLGKERGIGEMNAFDIISMSSGLDLSGLFETAEKRAERRFTARATVKEVEERVREIGGELGYEMEEAAAKGGAIGMWKGRVVVVVEVVEVAAARVTMVEVRVVKGGEEFEELHWRGLEGKLEGFAVPWERKCNL | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 39858277 | 39859584 | + | Maker00031998 | Lcy11g1600 | 647501 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1600 | 435 | Pfam | NAF domain | 312 | 365 | IPR004041 | GO:0007165(InterPro) | |
Lcy11g1600 | 435 | SMART | serkin_6 | 24 | 281 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g1600 | 435 | SUPERFAMILY | Protein kinase-like (PK-like) | 20 | 293 | IPR011009 | - | |
Lcy11g1600 | 435 | ProSiteProfiles | NAF domain profile. | 307 | 331 | IPR018451 | GO:0007165(InterPro) | |
Lcy11g1600 | 435 | Pfam | Protein kinase domain | 24 | 281 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g1600 | 435 | ProSiteProfiles | Protein kinase domain profile. | 24 | 281 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g1600 | 435 | Gene3D | Transferase(Phosphotransferase) domain 1 | 106 | 304 | - | - | |
Lcy11g1600 | 435 | FunFam | Non-specific serine/threonine protein kinase | 15 | 305 | - | - | |
Lcy11g1600 | 435 | Gene3D | Phosphorylase Kinase; domain 1 | 14 | 105 | - | - | |
Lcy11g1600 | 435 | FunFam | Aurora kinase A | 17 | 107 | - | - | |
Lcy11g1600 | 435 | ProSitePatterns | Protein kinases ATP-binding region signature. | 30 | 53 | IPR017441 | GO:0005524(InterPro) | |
Lcy11g1600 | 435 | CDD | CIPK_C | 313 | 419 | - | - | |
Lcy11g1600 | 435 | Gene3D | Kinase associated domain 1, KA1 | 308 | 426 | - | - | |
Lcy11g1600 | 435 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 143 | 155 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy11g1600 | 435 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 19 | 402 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1600 | Lcy-Chr11:39858277 | Lcy8g1696 | Lcy-Chr8:43538302 | 4.57E-115 | dispersed | |
Lcy8g2106 | Lcy-Chr8:47250171 | Lcy11g1600 | Lcy-Chr11:39858277 | 3.14E-13 | dispersed | |
Lcy1g1626 | Lcy-Chr1:16608023 | Lcy11g1600 | Lcy-Chr11:39858277 | 6.43E-07 | transposed | |
Lcy11g1600 | Lcy-Chr11:39858277 | Lcy13g0324 | Lcy-Chr13:3526403 | 9.60E-178 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65465 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1600 | K12761 | - | csv:101217555 | 663.685 |