Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1602 ATGCTAGCAGTGAGAATCTCCTCTGCTGTGAATCACATTGAAGAAAGGCAGTCGAAGCAAAAATGGAAGACTTCAATACCAAAAACTACGGAGACGGAGGCATGTCGAGACGCCATCAATTTGGAGAGCGAGGCCTGCAGAGCTTCCTGTAAAGGAGATAATAAAAGGCTCAGCAGAGGAGCTATGAATTCAGATCCCATTGCGGTCTCTCCGCCGCCGGAGCAGCCGCCGGCCCCGGCGGGGGAGGGGAACAACAGGGCAGTGACAGGGCTGGCGATTGGGATGGGGATTGCGGTGTTTCTGCTGGTTTTGGTGGTGAATTTGTGGGTTTGTGGAGTGGGGAAGCGGAGGAGGAAGGAGAGGGAAATGGAGGAAGGATTTGAGAAGAAATTGCAGGAGGGTGGGATTTGGAAGGGGAAGAAGAAGGAAATGGAGGTGGATTTAATGGCGGATGTGTCGGATTGTTTGGATAAATACAGAGTGTTTAAGATCGAGGAGCTGAATGAAGCGACGGATGGGTTTAGCGAGAGTAGCTTGATTCAAGGTTCGGTTTATAAAGGGAGTATCAATGGAGTTGAATATGCTATCAAGAAGATGAAGTGGAATGCCTATGAGCAGCTCAAGATCTTGCAGAAGGTAAACCATGGTAACCTAGTGAAGCTTGAAGGCTTTTGCATTGACCCTGAAGATGCAACATGCTACCTAATTTATGAATATGTGGAGAATGGTTCTCTTCATTCATGGCTACATGGAAGCCAAAGGCGAAAACTAAACTGGAGAACGAGATTGAGGATCGCGATCGATGTCGCTAACGGGTTACTATACATCCACGAACACACGAGGCCGCAAGTCGTGCACAAAGACATAAAAAGCAGCAACATTCTACTGGATGCAAACATGAGGGCTAAGATAGCCAACTTTGGGTTGGCAAAGTCAGGGTGCAATGCCATAACCATGCACATTGTTGGAACTCAAGGCTATATAGCACCCGAATACATAGCGGATGGGGTCGTGTCGACGAAGATGGATATCTTCTCGTTCGGAGTTGTTTTGCTCGAGCTCGTCTCCGGCAAGGAGGCCATTGATGAGGAAGGAGGGGTTCTATGGATGAGAGCCAGTGGATTTCTTGAAGGGAAAGAGAAGGAGAAGTTGGAGAGGTTGAAGAGTTGGATCGATGAAACTCTTTACGAGCAATCGTGTCCGATGGAGAGTTTGATGGATGTTATGAATGTTGCTGTAAGTTGCCTGCAGAAGGACCCAACAAAGAGGCCAAGCATGGTTGAGGTGGTTTATGCCCTCAGCAAGAGTGACGACGCGGTGTTCGAATTCTCCGACGACACTTTATCAGCCCCTCCTTTAACAGCGAGGTAG 1371 48.43 MLAVRISSAVNHIEERQSKQKWKTSIPKTTETEACRDAINLESEACRASCKGDNKRLSRGAMNSDPIAVSPPPEQPPAPAGEGNNRAVTGLAIGMGIAVFLLVLVVNLWVCGVGKRRRKEREMEEGFEKKLQEGGIWKGKKKEMEVDLMADVSDCLDKYRVFKIEELNEATDGFSESSLIQGSVYKGSINGVEYAIKKMKWNAYEQLKILQKVNHGNLVKLEGFCIDPEDATCYLIYEYVENGSLHSWLHGSQRRKLNWRTRLRIAIDVANGLLYIHEHTRPQVVHKDIKSSNILLDANMRAKIANFGLAKSGCNAITMHIVGTQGYIAPEYIADGVVSTKMDIFSFGVVLLELVSGKEAIDEEGGVLWMRASGFLEGKEKEKLERLKSWIDETLYEQSCPMESLMDVMNVAVSCLQKDPTKRPSMVEVVYALSKSDDAVFEFSDDTLSAPPLTAR 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39869953 39875877 + Maker00031635 Lcy11g1602 647503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1602 456 Pfam Protein kinase domain 182 430 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1602 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 284 296 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1602 456 SMART serkin_6 174 440 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1602 456 Gene3D Transferase(Phosphotransferase) domain 1 240 447 - -
Lcy11g1602 456 SUPERFAMILY Protein kinase-like (PK-like) 158 433 IPR011009 -
Lcy11g1602 456 FunFam PTI1-like tyrosine-protein kinase 3 240 446 - -
Lcy11g1602 456 Gene3D Phosphorylase Kinase; domain 1 144 239 - -
Lcy11g1602 456 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 66 441 IPR052611 -
Lcy11g1602 456 ProSiteProfiles Protein kinase domain profile. 164 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1602 456 MobiDBLite consensus disorder prediction 52 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1602 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1602 Lcy-Chr11:39869953 Lcy1g1056 Lcy-Chr1:9530356 1.25E-68 dispersed
Lcy11g1602 Lcy-Chr11:39869953 Lcy8g0576 Lcy-Chr8:19645572 1.19E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g597 . . . . . Bpe14g01221 . . . . Cma06g01349 Cma14g01771 Car06g01170 Car14g01593 . Cpe08g00302 . Bhi01g00738 . . . . . Lcy11g1602 . . . . . . . . . Cone7ag0290 . Lsi05g01658 . . Cme06g00553 Blo02g00600 Blo07g00240 Bda11g00607 . . . . . . Cmo06g01362 Cmo14g01807 . . . . . . . . . . . . . Cla05g00493 . . . . . . . Csa03g01270 Chy06g00523 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008192 1 1 2 0 1 1 2 1 1 1 0 1 4 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65466 None None None None Lcy PK