Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1629 ATGAAACCTTCTCGTCTAAATTCCCTCCGGCGAATTCAGTCCGGCGACCTCGTCATGAAGCTCCCCGATGATCCAGACGAATCCAAGAGGCCCCACTTCCCTCTCGATTCAAGTTGTTACAAAATCGTCGACGAAATTGGAGTCGGCGTCAGCGCCGTCGTCTACAAAGCCATCTGCGTTCCGATGAACTCTGCAGTGGTGGCCATCAAAGCCATCGACCTCGATCGATCACGAACAGATTTCGACGACATTCGAAGAGAAGCCAAAATTCTGTCACTTCTCTCTCACCCCAACATTTTAAACGCCCATTGTTCTTTCACCGTTGATCGGAAGCTCTGGGTCGTGATGCCGTTCATGTCGGCCGGTTCTCTGCAGTCCATCATTACGTCGTCGTTTCCCGATGGATTGCCGGAGCCCTGCATTGCCGTCGTTCTCCGTGAAATTCTTAACGCTCTGTCTTACCTCCACGACCAAGGCCACCTCCACCGCGACATTAAAGCCGGCAACATTCTGATGGACTCAAATGGGTCCGTCAAGCTCGCCGATTTCGGAGTTTCCACGTCGATTTTCGAGGCGAATTCAAAACAGGGCATGTCAATTTCTTCCTTATCGAATTCAATGATGCTGAACGAAGTCGCCGGAACGCCGTACTGGATGGCGCCGGAGGTGATCCACTCGCACAATGGGTATAGTTTGAAGGCGGATATATGGTCGTTTGGAATCACAGCGTTAGAATTAGCCCATGGACGGCCTCCCCTGTCTCATCTCCCTCCGTCCAAATCTCTGCTTCTGAAAATCACGCGACGGTTTCGATTCTCCGATTACGAGAAGCACCAAAACAGCAAGAACAAGAACAAATTCTCAAAAGGGTTCAAGGAAATGGTCGCGTCTTGCCTCGATCAGGAGCCATCAAAAAGACCCTGCGCGCAGAAATTGCTCAAACACTCGTTCTTCAGGAACTGCAAGGGCCCTGATCTTCTCGTAAAGACTGTGCTGCATGGTTTGCCGAGCGTGGAAGAACGGTTCAAATTGGGGAAACTGCAGCGACTGCCGTCGATGAAGACCGAGGAAGACGAGGAAGAGGAACTGGAGAAGGAGATTATAAAACAGAGGAGGATCAGTGGGTGGAATTTCAACGAGGATGGACTCGAACTGGAGCCTGTTTTTCCAGGGGAAAGTTGCGAGGACGATGAGTGTTCGATTATAAAGCAGGTTAGATTCGGAGGGGAATCGATCATCGAGGAGAAGGGGTCGGGGGATTCGAGCGAGTGCTGTTCGGGGGTGTCGGAGGAGGTTGTGGAGAAGGAGTCGATAGTGGGGGGGCTGGTGGCGCTGAAGAGGAGCCTGGACGAGCAGAGGAGGGCGGTGGGGAGTTTGATAGAGCTGATGGAAGGGGAGAAAGGAGGAGAGATTAGCAGAGAGGAGCAGATGGGGAGATTGATGGAGAAGATGACGAGAGAGTTGGAGAATGAGAGGAAGAGGAACTTTGAATTGGAGATGGAGTTGGAATTTCTCAGGCTTCAGATTTCCGCTGCTTCTAATAATGGCGGTGGTTCTGCCGCCATTCATAGCTGA 1575 51.62 MKPSRLNSLRRIQSGDLVMKLPDDPDESKRPHFPLDSSCYKIVDEIGVGVSAVVYKAICVPMNSAVVAIKAIDLDRSRTDFDDIRREAKILSLLSHPNILNAHCSFTVDRKLWVVMPFMSAGSLQSIITSSFPDGLPEPCIAVVLREILNALSYLHDQGHLHRDIKAGNILMDSNGSVKLADFGVSTSIFEANSKQGMSISSLSNSMMLNEVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRRFRFSDYEKHQNSKNKNKFSKGFKEMVASCLDQEPSKRPCAQKLLKHSFFRNCKGPDLLVKTVLHGLPSVEERFKLGKLQRLPSMKTEEDEEEELEKEIIKQRRISGWNFNEDGLELEPVFPGESCEDDECSIIKQVRFGGESIIEEKGSGDSSECCSGVSEEVVEKESIVGGLVALKRSLDEQRRAVGSLIELMEGEKGGEISREEQMGRLMEKMTRELENERKRNFELEMELEFLRLQISAASNNGGGSAAIHS 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40112513 40114087 + Maker00031700 Lcy11g1629 647530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1629 524 SUPERFAMILY Protein kinase-like (PK-like) 39 335 IPR011009 -
Lcy11g1629 524 SMART serkin_6 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1629 524 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524(InterPro)
Lcy11g1629 524 ProSiteProfiles Protein kinase domain profile. 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1629 524 Coils Coil 353 373 - -
Lcy11g1629 524 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 32 390 IPR047173 GO:0043539(InterPro)|GO:1902456(PANTHER)
Lcy11g1629 524 Coils Coil 474 515 - -
Lcy11g1629 524 Gene3D Phosphorylase Kinase; domain 1 29 118 - -
Lcy11g1629 524 FunFam Serine/threonine-protein kinase BLUS1 29 118 - -
Lcy11g1629 524 Pfam Protein kinase domain 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1629 524 Gene3D Transferase(Phosphotransferase) domain 1 122 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1629 K08835 - - csv:101215648 794.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1629 Lcy-Chr11:40112513 Lcy12g0509 Lcy-Chr12:6116736 2.85E-86 dispersed
Lcy11g1629 Lcy-Chr11:40112513 Lcy10g1182 Lcy-Chr10:34420572 7.78E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy9g1314 . 1 697 MAP Kinase Kinase Kinase Kinase AT1G53165 62.0 1.8e-220 763.1
Lcy7g0345 . 268 525 MAP Kinase Kinase Kinase Kinase AT1G53165 51.4 1.6e-64 245.0
Lcy9g1314 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.6 2.0e-232 802.7
Lcy7g0345 . 268 525 MAP Kinase Kinase Kinase Kinase AT3G15220 51.0 9.6e-65 245.7
Lcy7g0345 . 4 909 MAP Kinase Kinase Kinase Kinase AT1G69220 55.9 5.1e-235 811.6
Lcy9g1314 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 4.1e-67 253.8
Lcy10g1923 . 122 686 MAP Kinase Kinase Kinase Kinase AT5G14720 66.9 5.8e-216 748.0
Lcy6g2295 . 7 853 MAP Kinase Kinase Kinase Kinase AT4G24100 54.8 6.9e-231 797.7
Lcy10g1923 . 127 514 MAP Kinase Kinase Kinase Kinase AT4G24100 60.2 1.6e-134 477.6
Lcy6g2295 . 11 854 MAP Kinase Kinase Kinase Kinase AT4G10730 55.0 2.3e-231 799.3
Lcy10g1923 . 122 490 MAP Kinase Kinase Kinase Kinase AT1G70430 69.6 3.0e-147 519.6
Lcy12g0509 . 1 658 MAP Kinase Kinase Kinase Kinase AT1G79640 57.7 7.0e-206 714.5
Lcy10g1923 . 127 683 MAP Kinase Kinase Kinase Kinase AT1G79640 50.9 5.4e-150 528.9
Lcy10g1923 . 122 455 MAP Kinase Kinase Kinase Kinase AT1G23700 58.5 5.6e-104 375.6
Lcy11g1629 . 33 492 MAP Kinase Kinase Kinase Kinase AT4G14480 58.4 7.3e-144 508.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013881 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65467 None None None None Lcy PK