Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1629 ATGAAACCTTCTCGTCTAAATTCCCTCCGGCGAATTCAGTCCGGCGACCTCGTCATGAAGCTCCCCGATGATCCAGACGAATCCAAGAGGCCCCACTTCCCTCTCGATTCAAGTTGTTACAAAATCGTCGACGAAATTGGAGTCGGCGTCAGCGCCGTCGTCTACAAAGCCATCTGCGTTCCGATGAACTCTGCAGTGGTGGCCATCAAAGCCATCGACCTCGATCGATCACGAACAGATTTCGACGACATTCGAAGAGAAGCCAAAATTCTGTCACTTCTCTCTCACCCCAACATTTTAAACGCCCATTGTTCTTTCACCGTTGATCGGAAGCTCTGGGTCGTGATGCCGTTCATGTCGGCCGGTTCTCTGCAGTCCATCATTACGTCGTCGTTTCCCGATGGATTGCCGGAGCCCTGCATTGCCGTCGTTCTCCGTGAAATTCTTAACGCTCTGTCTTACCTCCACGACCAAGGCCACCTCCACCGCGACATTAAAGCCGGCAACATTCTGATGGACTCAAATGGGTCCGTCAAGCTCGCCGATTTCGGAGTTTCCACGTCGATTTTCGAGGCGAATTCAAAACAGGGCATGTCAATTTCTTCCTTATCGAATTCAATGATGCTGAACGAAGTCGCCGGAACGCCGTACTGGATGGCGCCGGAGGTGATCCACTCGCACAATGGGTATAGTTTGAAGGCGGATATATGGTCGTTTGGAATCACAGCGTTAGAATTAGCCCATGGACGGCCTCCCCTGTCTCATCTCCCTCCGTCCAAATCTCTGCTTCTGAAAATCACGCGACGGTTTCGATTCTCCGATTACGAGAAGCACCAAAACAGCAAGAACAAGAACAAATTCTCAAAAGGGTTCAAGGAAATGGTCGCGTCTTGCCTCGATCAGGAGCCATCAAAAAGACCCTGCGCGCAGAAATTGCTCAAACACTCGTTCTTCAGGAACTGCAAGGGCCCTGATCTTCTCGTAAAGACTGTGCTGCATGGTTTGCCGAGCGTGGAAGAACGGTTCAAATTGGGGAAACTGCAGCGACTGCCGTCGATGAAGACCGAGGAAGACGAGGAAGAGGAACTGGAGAAGGAGATTATAAAACAGAGGAGGATCAGTGGGTGGAATTTCAACGAGGATGGACTCGAACTGGAGCCTGTTTTTCCAGGGGAAAGTTGCGAGGACGATGAGTGTTCGATTATAAAGCAGGTTAGATTCGGAGGGGAATCGATCATCGAGGAGAAGGGGTCGGGGGATTCGAGCGAGTGCTGTTCGGGGGTGTCGGAGGAGGTTGTGGAGAAGGAGTCGATAGTGGGGGGGCTGGTGGCGCTGAAGAGGAGCCTGGACGAGCAGAGGAGGGCGGTGGGGAGTTTGATAGAGCTGATGGAAGGGGAGAAAGGAGGAGAGATTAGCAGAGAGGAGCAGATGGGGAGATTGATGGAGAAGATGACGAGAGAGTTGGAGAATGAGAGGAAGAGGAACTTTGAATTGGAGATGGAGTTGGAATTTCTCAGGCTTCAGATTTCCGCTGCTTCTAATAATGGCGGTGGTTCTGCCGCCATTCATAGCTGA 1575 51.62 MKPSRLNSLRRIQSGDLVMKLPDDPDESKRPHFPLDSSCYKIVDEIGVGVSAVVYKAICVPMNSAVVAIKAIDLDRSRTDFDDIRREAKILSLLSHPNILNAHCSFTVDRKLWVVMPFMSAGSLQSIITSSFPDGLPEPCIAVVLREILNALSYLHDQGHLHRDIKAGNILMDSNGSVKLADFGVSTSIFEANSKQGMSISSLSNSMMLNEVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRRFRFSDYEKHQNSKNKNKFSKGFKEMVASCLDQEPSKRPCAQKLLKHSFFRNCKGPDLLVKTVLHGLPSVEERFKLGKLQRLPSMKTEEDEEEELEKEIIKQRRISGWNFNEDGLELEPVFPGESCEDDECSIIKQVRFGGESIIEEKGSGDSSECCSGVSEEVVEKESIVGGLVALKRSLDEQRRAVGSLIELMEGEKGGEISREEQMGRLMEKMTRELENERKRNFELEMELEFLRLQISAASNNGGGSAAIHS 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40112513 40114087 + Maker00031700 Lcy11g1629 647530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1629 524 SUPERFAMILY Protein kinase-like (PK-like) 39 335 IPR011009 -
Lcy11g1629 524 SMART serkin_6 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1629 524 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524(InterPro)
Lcy11g1629 524 ProSiteProfiles Protein kinase domain profile. 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1629 524 Coils Coil 353 373 - -
Lcy11g1629 524 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 32 390 IPR047173 GO:0043539(InterPro)|GO:1902456(PANTHER)
Lcy11g1629 524 Coils Coil 474 515 - -
Lcy11g1629 524 Gene3D Phosphorylase Kinase; domain 1 29 118 - -
Lcy11g1629 524 FunFam Serine/threonine-protein kinase BLUS1 29 118 - -
Lcy11g1629 524 Pfam Protein kinase domain 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1629 524 Gene3D Transferase(Phosphotransferase) domain 1 122 370 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1629 Lcy-Chr11:40112513 Lcy12g0509 Lcy-Chr12:6116736 2.85E-86 dispersed
Lcy11g1629 Lcy-Chr11:40112513 Lcy10g1182 Lcy-Chr10:34420572 7.78E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65467 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1629 K08835 - csv:101215648 794.267