Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1660 ATGGATTACTCTGGATTCTTCTCTCCGGTTTCGGATTTCTCATCGGAATCATCGTTCGGCTCACCGGAGTCGTCCTTCGTGAATTTGGACCACAATTTTCTCCCTTTCAATGAGAATGACTCGGAGGAGATGCTTCTGTATGGGCTGATCTCGGAGGGGACGCAGGAGTCGTCGGATGCCGGCGTCGGGACGGTGCGAGTGAAGGAAGAGGAGGTGGATTCGATCGGCGAAGAGAGCCCGAAGAAGGAGAGGGCTTACAGGGGAGTTCGCAGACGGCCGTGGGGGAAATTCGCCGCGGAAATTAGAGATTCCACCCGACATGGCATAAGGGTCTGGTTGGGGACTTTCGACAGTGCCGAAGCCGCCGCTTTGGCCTACGATCAAGCCGCCTTTTCCATGAGGGGACCCGCCGCAATTCTCAATTTTCCCGTCGACACAGTCAGGGAGTCTCTCAAGGAAATGAACTGCGGCGCCGGTGATGGGTTCGCCGAGGACGGCGGGTCTCCGGTGGTGGCGTTGAAAAGAAAACACTCGATCAGAAGGAAAGCCATAAGCAAAAAGAGCAAAGAAAGGGATGTGAGGATCCAGAATATGGTGGTTTTGGAGGATTTAGGAGCAGAGTATTTGGAAGAACTTTTGGGCTCTTCTCAAAGTGGTAGCCCTTGTTCTTTCTAA 675 53.48 MDYSGFFSPVSDFSSESSFGSPESSFVNLDHNFLPFNENDSEEMLLYGLISEGTQESSDAGVGTVRVKEEEVDSIGEESPKKERAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGPAAILNFPVDTVRESLKEMNCGAGDGFAEDGGSPVVALKRKHSIRRKAISKKSKERDVRIQNMVVLEDLGAEYLEELLGSSQSGSPCSF 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40455985 40456659 + Maker00032117 Lcy11g1660 647561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1660 224 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1660 224 SUPERFAMILY DNA-binding domain 85 145 IPR016177 GO:0003677(InterPro)
Lcy11g1660 224 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1660 224 Pfam AP2 domain 86 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1660 224 CDD AP2 86 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1660 224 FunFam Ethylene-responsive transcription factor 2 84 144 - -
Lcy11g1660 224 MobiDBLite consensus disorder prediction 1 23 - -
Lcy11g1660 224 PANTHER DNA-BINDING DOMAIN 55 182 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Lcy11g1660 224 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1660 224 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1660 224 SMART rav1_2 85 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1660 224 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1660 Lcy-Chr11:40455985 Lcy13g0368 Lcy-Chr13:4104615 2.93E-81 dispersed
Lcy11g1659 Lcy-Chr11:40437371 Lcy11g1660 Lcy-Chr11:40455985 3.50E-21 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19154 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1660 K14516 - csv:101210326 338.191