Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1662 ATGACTCAACAACTAGGAGTGCTAAGTGCACTCGATCTCGCCAAGACCCAATGGTACCATTTCACGGCCATCATCATCGCCGGAATGGGGTTCTTTACCGACGCCTACGATCTCTTCTGCATCGCCGTCGTTTCGAAGTTGATCGGTCGCATATACTACTACACTCCGGGCTCCAGCAGGCCTGGATCGCTTCCTCCGAACGTCACGGCCGCCGTGAGCGGCGTCGCGCTGTGTGGAACTCTGGCCGGGCAGCTCTTCTTCGGGTGGCTTGGTGACAAGTTGGGTAGGAAGAAAGTGTATGGTATAACGTTGATTCTTATGGTGATTTGTTCGTTTGGGTCAGGGCTCAGTTTTGGGCACTCGGCCAAAGCAACAATGACCACTTTATGCCTATTTCGATTCTGGCTTGGCTTTGGGATTGGTGGTGATTACCCACTTTCGGCCACTATTATGTCTGAATATGCAAACAAGAAAACTCGTGGGGCTTTTATTGCGGCCGTCTTTGCTATGCAAGGATTTGGAATTTTGGCCGGTGGGATCGTAGCTTTGATTGTTTCAGCTGCATTCAACAACAGATTCTCAGCTCCCTCATACGAGGCGGACCCAATCGGCTCGACCGTACCGGAGGCCGACTACGTATGGCGCGTAGTTCTAATGTTCGGCGCCATCCCCGCAGGTCTAACATACTATTGGCGCATGAAAATGCCGGAAACCGCTCGGTACACCGCGCTGGTAGCCAAGAACGCCAAACAAGCCGCCGTGGACATGTCCAAGGTCTTACAAGTGGAGCTCGAGGTCGAGGAGGAGAAGCTGGAGAAAATCGTCACCAAAGACAAAAACAACTTCGGATTATTTTCCAAACAGTTCCTCAGACGACACGGCCTCCACTTGCTCGGAACCACCAGCACTTGGTTCTTGCTGGACATCGCCTTTTACAGCCAAAACCTCTTCCAAAAAGACATCTTCACCGGAATCGGGTGGCTTCCCCCAGCAAAGACCATGAGCGCTCTCGAAGAGTGCTTCAGAATCGCCAGAGCCCAGACGCTGATCGCGCTTTTTGGGACTGTGCCGGGGTATTGGTTCACCGTGTTTCTGATCGACATCATCGGAAGATTCACCATCCAGTTGCTCGGTTTCATAATGATGACTATTTTCATGTTTGCTCTTGCGTTGCCTTATAACCATTGGAAGAATCACAACCACGCTGGGTTTTTGGCCATGTACTCCTTGACCTTCTTCTTCGCCAATTTTGGGCCGAATTCCACCACTTTCATTGTTCCAGCTGAAATCTTCCCTGCCAGGCTCCGGTCCACGTGTCACGGGATCTCCGCCGCCGCTGGTAAGGCCGGAGCAATCATTGGGGCATTTGGGTTTCTATATGCAGCACAAAGTACGGACCCAACGAAAACCGACCCAGGTTACCCAGCCGGTATTGGTATTAAGAACTCTCTCATTGCACTGGGTTGCATCAACTTTCTCGGCGGTTTGCTTACGTTGTTGGTGCCGGAACCTAAAGGAAAATCACTCGAGGAGTTGACCGGCGAGAACGAGGTGGCCGAGGAAGGCGGCCAACCGTCCAATAGAACAGTACAGGTGTGA 1599 51.97 MTQQLGVLSALDLAKTQWYHFTAIIIAGMGFFTDAYDLFCIAVVSKLIGRIYYYTPGSSRPGSLPPNVTAAVSGVALCGTLAGQLFFGWLGDKLGRKKVYGITLILMVICSFGSGLSFGHSAKATMTTLCLFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAAFNNRFSAPSYEADPIGSTVPEADYVWRVVLMFGAIPAGLTYYWRMKMPETARYTALVAKNAKQAAVDMSKVLQVELEVEEEKLEKIVTKDKNNFGLFSKQFLRRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIFTGIGWLPPAKTMSALEECFRIARAQTLIALFGTVPGYWFTVFLIDIIGRFTIQLLGFIMMTIFMFALALPYNHWKNHNHAGFLAMYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHGISAAAGKAGAIIGAFGFLYAAQSTDPTKTDPGYPAGIGIKNSLIALGCINFLGGLLTLLVPEPKGKSLEELTGENEVAEEGGQPSNRTVQV 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40474248 40477335 + Maker00032175 Lcy11g1662 647563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1662 532 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 9 511 - -
Lcy11g1662 532 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 506 IPR020846 GO:0022857(InterPro)
Lcy11g1662 532 NCBIfam phosphate:H+ symporter 11 515 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
Lcy11g1662 532 CDD MFS_PhT 24 505 - -
Lcy11g1662 532 FunFam Inorganic phosphate transporter 1-6 19 527 - -
Lcy11g1662 532 Pfam Sugar (and other) transporter 25 512 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy11g1662 532 Gene3D MFS general substrate transporter like domains 270 529 IPR036259 -
Lcy11g1662 532 Gene3D MFS general substrate transporter like domains 19 266 IPR036259 -
Lcy11g1662 532 SUPERFAMILY MFS general substrate transporter 11 512 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1662 Lcy-Chr11:40474248 Lcy12g2120 Lcy-Chr12:42491286 2.31E-292 dispersed
Lcy11g1662 Lcy-Chr11:40474248 Lcy11g1663 Lcy-Chr11:40497617 3.47E-283 tandem
Lcy11g1662 Lcy-Chr11:40474248 Lcy12g2119 Lcy-Chr12:42485577 2.64E-290 wgd
Lcy11g1662 Lcy-Chr11:40474248 Lcy13g0374 Lcy-Chr13:4260426 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1662 K08176 - csv:101213007 939.102