Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1685 ATGACCGAGGCAGGAGCTGGCTTGTGTAAAGCGCTTTCGCATTTAGTAGGCATGTCTGAGTCTGATGTCCTTGCCCTTCTTGTTGCGGCTAAGAATTCATTTAATCATTTCAATGGGAAACAGCTTGCCCTCCACTTTGGTAGGCTCAGGATTCCAGGCCTTGAGTTCGAATTCATTTTGTCACTGCTTGTGTTTTTCTCGATAATTTTCCCCATTTCCTTGTTCTTCATCTGTTATGGGTTTCTTTCGTGCTTAATATTTGTTGTTTGCCAGGTTACCGAAAGAATCTTGTTCATGAGAGCAAAGGCCTGGATTAACGAACAAATATTTGGCCTCAAGAGTAAACTTAGGAAAATGATAAATTGTATTCGTTCAGGGGATCAATTAAGAGTAGATGAAATGATGCATTCATCAGACTCGCTGGCAACTCGAGACTATTCAGCCAGTGGTTTTTCATCACGAACGGGGGAGGTGGAAACAAAGGTGGATAATGGCAACATTGAAGAAGCTGAATCATCTCTTCGTGAGAGTGGCTATCTGAATTATGAGGAAGCACGTGCTTTACTTGGAAGGCTCGAGTATCAAAAGGGTAACATAGAAGCTGCTCTTCAAGTCTTTGAAGGAATAGATATCGCTGCTGTAATTTCCAGGATAAAAGCTTCCATTTCAACGCGATCTGAACAAAATAGACGGCAATCACAGAGTGATGTTGTGCCCACTATGTCTATGCATGCCATTAGTTTACTTCTTGAAGCTATTTTTCTGAAAGCAAAATCATTACAGGGTTTAGGAAGGTTTGTAGAGGCAGCCAAATCATGCAAACTAATTTTAGACACGGTTGAATCTGCATTGCCAGAAGGCTTACCTGAAAACTTTGCTATTGATTGTAAATTGCAAGAGACTCTAACAAAGGCTGTCGAATTGCTTCCAGAATTGTGGAAATCTGCTGGGTCTCCAGAAGAATCTATCTTGTCATATAGGCGTGCCCTTCTCTTTCAATGGAATCTAGAAATGAAAACCAGAGCAAAAATAGAAAAAGAGTTTGCAATATTCCTTCTCTATAGTGGTTGTGATGCAAGTCCTCCCAATCTCCGTTCGCAAATGGAAAGCTCATTTGTGCCAAGAAATAATATGGAAGAGGCTATTCTTCTGTTGATGGATCTGATGAGAAAATTTATACTTGGATTGATTGTATGGGACCCATCAATAATAGAGCATCTCTCGTTTGCACTGTCTATTTCAGGGGAATTTGGAGCTCTAGCTCATGAGGTTGAACAATTGCCTCCAGGAATTATAGGAAGAAAAGAAAAGTACTGCACCCTTGCTCTTTGTTACTATGGGGAAGGTAAAAGCTTGGTTGCGTTGAATCTGTTGAAGAACTTCTTGAGTAACATAGAAAACGTAGACTGCTTACTGGAATTATTGTTGGCTTCAAAGCTCTGTGGAGAAAATTTGGTTTGTCTTGATGAGGGGGTGACATACACATTGAGAGTGCTTTCGGAACTGCATGGTAAATGCATCCAGATGGCTTCTGTTGCTAACTGCTTACTTGGTGTGTTATTGTCAGCTGAATCCAAATTAGTTGCTTCTGATTCTCAGAAAACTTTGAAGCAATCTGAAGCACTCAAGGCACTACAAACTGGTGAGCAACTGATGAGACAAAGAGATCCATTCATAGTTTATCATCTTTGTCTTGAATATGCTGAACAGAGGAAGCTAGATATTGCTCTATACTATGCAAAACAGCTAGTGAAACTCGAGGCTGGCTCTAGTCTGAAATCTTACATCCTCTTGGCCAGAATATTGTCTGCCCAGAAACGGTTTGTGGATGCAGAGACTGTACTCAATGCTGCTCTTGAGCAGACAGGGAAGTGGGAACAGGGGGAACTCTTACGAACTAAAGCTAAGCTCCAGATTGCACAGGGCCAGTTAAAGAACGGTATAGAAACATATAGTCATCTTCTTGCTATAATTCAAATCCAGAACAAAAGTAATGGGGTTGGAAAGATGCTTTCAAAGGAAGTGAGAAAATCTGACCGAAGTCTGGAAATAGATACATGGCATGATTTAGCCAATATTTACACAAGCTTGTCTCAGTGGCGGGATGCTGAAATCTGTCTATCAAAATTGCAGGCAATCAATCCATATTCTGCTTCTAAATGGCACGCCACAGGTTTACTCTACGAGTCGAAGGGTCTGCCACAAGATGCTTTGCAAGCATACAACAAAGCATTGGACATTGATCCTGGCCATGTTCCCAGCTTGATATCAACTGCTTGTCTTCTCCAACAACTAGGTGGCAGCCAGTCATTTCCTGTGGTAAGAAGCTTGCTAACCGACGCCCTTCGACTAGATCGATCAAATCCTTCTGCGTGGTACAATCTCGGGCTGCTATATAAAGCTGACGTTGGGGCATCAGCGCTGGAGGTTGCTGAATGCTTTGAGGCTGCAACTCTGCTTGAAGAGTCAGCACCAGTTGAACCTTTCAGAAGATGA 2496 41.95 MTEAGAGLCKALSHLVGMSESDVLALLVAAKNSFNHFNGKQLALHFGRLRIPGLEFEFILSLLVFFSIIFPISLFFICYGFLSCLIFVVCQVTERILFMRAKAWINEQIFGLKSKLRKMINCIRSGDQLRVDEMMHSSDSLATRDYSASGFSSRTGEVETKVDNGNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALQVFEGIDIAAVISRIKASISTRSEQNRRQSQSDVVPTMSMHAISLLLEAIFLKAKSLQGLGRFVEAAKSCKLILDTVESALPEGLPENFAIDCKLQETLTKAVELLPELWKSAGSPEESILSYRRALLFQWNLEMKTRAKIEKEFAIFLLYSGCDASPPNLRSQMESSFVPRNNMEEAILLLMDLMRKFILGLIVWDPSIIEHLSFALSISGEFGALAHEVEQLPPGIIGRKEKYCTLALCYYGEGKSLVALNLLKNFLSNIENVDCLLELLLASKLCGENLVCLDEGVTYTLRVLSELHGKCIQMASVANCLLGVLLSAESKLVASDSQKTLKQSEALKALQTGEQLMRQRDPFIVYHLCLEYAEQRKLDIALYYAKQLVKLEAGSSLKSYILLARILSAQKRFVDAETVLNAALEQTGKWEQGELLRTKAKLQIAQGQLKNGIETYSHLLAIIQIQNKSNGVGKMLSKEVRKSDRSLEIDTWHDLANIYTSLSQWRDAEICLSKLQAINPYSASKWHATGLLYESKGLPQDALQAYNKALDIDPGHVPSLISTACLLQQLGGSQSFPVVRSLLTDALRLDRSNPSAWYNLGLLYKADVGASALEVAECFEAATLLEESAPVEPFRR 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40706887 40713216 + Maker00031555 Lcy11g1685 647586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1685 831 SMART tpr_5 250 283 IPR019734 GO:0005515(InterPro)
Lcy11g1685 831 SMART tpr_5 684 717 IPR019734 GO:0005515(InterPro)
Lcy11g1685 831 SMART tpr_5 592 625 IPR019734 GO:0005515(InterPro)
Lcy11g1685 831 SMART tpr_5 718 751 IPR019734 GO:0005515(InterPro)
Lcy11g1685 831 SMART tpr_5 628 661 IPR019734 GO:0005515(InterPro)
Lcy11g1685 831 Pfam Tetratricopeptide repeat 722 750 IPR019734 GO:0005515(InterPro)
Lcy11g1685 831 Gene3D Tetratricopeptide repeat domain 404 666 IPR011990 GO:0005515(InterPro)
Lcy11g1685 831 ProSiteProfiles TPR repeat profile. 718 751 IPR019734 GO:0005515(InterPro)
Lcy11g1685 831 Gene3D Tetratricopeptide repeat domain 669 825 IPR011990 GO:0005515(InterPro)
Lcy11g1685 831 SUPERFAMILY TPR-like 540 657 IPR011990 GO:0005515(InterPro)
Lcy11g1685 831 SUPERFAMILY TPR-like 629 800 IPR011990 GO:0005515(InterPro)
Lcy11g1685 831 ProSiteProfiles Leucine-rich repeat profile. 451 472 IPR001611 GO:0005515(InterPro)
Lcy11g1685 831 PANTHER PROTEIN NPG1 112 830 IPR043376 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2134 Lcy-Chr13:40265217 Lcy11g1685 Lcy-Chr11:40706887 1.01E-182 transposed
Lcy9g1466 Lcy-Chr9:39707058 Lcy11g1685 Lcy-Chr11:40706887 9.30E-175 transposed
Lcy11g1685 Lcy-Chr11:40706887 Lcy12g2097 Lcy-Chr12:42276303 7.74E-284 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1685 K21843 - csv:101206105 1314.67