Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1702 | ATGTACAAGGAGCTGACGAGTACAACCCGACACGAGCCTAGAAATAGGACCAGAAAATGGACTCCGGAGGCGAAACGGGCCAAAAGGTCGGAGGGATCGGGCCTTGGCCCGACCCATATGGTCGGCCTCGACCTTTTCGCCTCCGTTCGGTCCCTGCTGCCCCTGACAGCCCCAATTCCACTCGGTTCAGTCCTGAATCGCCTCCGAACGCCTAGAAACCCTAGAGCAGGAACAATTTCCGGCGAGATTCCGGAAGAGCCAGTTGTCTCCAAGAATTCTGGATTGCTCTTCGAGAAGCGTTTAATCGAGAGGCACATTTCAGACTATGGGAAATGCCCTGTCACAGGTGAACCCCTTTCAATCGATGACATTGTTCCAATTAAAACTGGAAAGATAGTCAAGCCCAGGCAAGCCGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGTTTTGGTGCTGTCCAATTTTGCACTAGAGCAACAGCTGCATACAGCTAGACAGGAGCTTAGTCATGCCTTGTATCAGCATGATGCTGCATGTCGTGTAATTGCAAGACTTAAGAAAGAAAGGGATGAGGCTAGGTCATTACTTGCTCAGGCAGAGAGACAGATGCCCTTGTCATCAACTTCGATTTCATCCAATGCTGCTGTCAATGTTAATGGGAAAAGAGTTAATGAGGATGAGGAATTGGGTCCTGATGGGAAGAAAATACGTCCTGGAATATCAGCCACCGTTATCTCTGAGCTCACAGACTGTAATGCTGCTCTTTCACAACAAAGGAAGAGGCGTCAGATACCTCCTACGTTGGTTCCTGTTGAGGCTTTAGAAAGTTACACCCAGATTTCTAGTCATCCACTTCATAAAACAAACAAACCAGGGATTATATCTCTTGACATCCATCATGAGAAGGATGTCATTGCAACTGGAGGGCTGGACACAAATGCTGTTCTTTTTGGTCGATCATCTGGGGAGATTTTATCTACACTAAGTGGCCATTCAAAGAAGGTAACAAGTGTCAAATTTGTCGCCCGAGATGATTTATTCTTGACTGGTTCAGCTGACAAGACTGTACGTGTGTGGCAACAAGCTGATGATGGGAACTACAATTGTAGGCACATTTTAAAGGATCACACAGCTGAGGTCCAAGCTGTTACCGTCCATGCTACCAATAACTTCTTTGTCACTGCCTCCCTTGATAACACATGGTGTTTTTATGAGCTTGCTTCAGGACTATGCCTGACACAGGTTTCAGAGGCTTCAGGAACCGAGGGATACACATCTGCTGCCTTTCATCCCGATGGTCTCATCCTTGGAACAGGCACGTCGGAGGCCCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCCAGATTTGATGGACACGTTGGGGCAGTAACTGCTATATCTTTTTCTGAAAATGGTTACTTCCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAATTTCCGTACATTTGCACCTTATGATTCAGAAACTCCAACAAACTCCGTGGAATTTGACCATAGTGGATCTTACCTTGCGATTGCTGGCTCAGATATAAGTTCTTCAGTAATGCCTATAAAGTTTAATGTTGAGGCTTTAACGCGCAGAGTTTACCAAGTTGCTAGTGTGAAATCTGAATGGAATTGTATCAAAACTATTCCAGATTTGTCTGGCACAGGTAAAGCAACTTGCCTAAAGTTTGGTCCAGATGCAAAATACCTGGCAGTCGGGTCAATGGATCGAAATCTTCGGATTTTCGGTGTGCCTGGGGACGATGGCCCCATGGAGACATAA | 1836 | 46.02 | MYKELTSTTRHEPRNRTRKWTPEAKRAKRSEGSGLGPTHMVGLDLFASVRSLLPLTAPIPLGSVLNRLRTPRNPRAGTISGEIPEEPVVSKNSGLLFEKRLIERHISDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSISSNAAVNVNGKRVNEDEELGPDGKKIRPGISATVISELTDCNAALSQQRKRRQIPPTLVPVEALESYTQISSHPLHKTNKPGIISLDIHHEKDVIATGGLDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVARDDLFLTGSADKTVRVWQQADDGNYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYELASGLCLTQVSEASGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETPTNSVEFDHSGSYLAIAGSDISSSVMPIKFNVEALTRRVYQVASVKSEWNCIKTIPDLSGTGKATCLKFGPDAKYLAVGSMDRNLRIFGVPGDDGPMET | 611 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 40902272 | 40911125 | + | Maker00031706 | Lcy11g1702 | 647603 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1702 | 611 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 422 | 463 | IPR001680 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | Coils | Coil | 187 | 207 | - | - | |
Lcy11g1702 | 611 | Gene3D | - | 273 | 600 | IPR015943 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | FunFam | pre-mRNA-processing factor 19 | 270 | 602 | - | - | |
Lcy11g1702 | 611 | CDD | WD40 | 297 | 600 | - | - | |
Lcy11g1702 | 611 | CDD | RING-Ubox_PRP19 | 79 | 128 | - | - | |
Lcy11g1702 | 611 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 134 | IPR013083 | - | |
Lcy11g1702 | 611 | FunFam | Pre-mRNA-processing factor 19, putative | 77 | 132 | - | - | |
Lcy11g1702 | 611 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 464 | 504 | IPR001680 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 333 | 365 | - | - | |
Lcy11g1702 | 611 | Pfam | WD domain, G-beta repeat | 459 | 495 | IPR001680 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | Pfam | WD domain, G-beta repeat | 328 | 364 | IPR001680 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | Pfam | WD domain, G-beta repeat | 563 | 600 | IPR001680 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | Pfam | WD domain, G-beta repeat | 429 | 454 | IPR001680 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | Pfam | WD domain, G-beta repeat | 373 | 409 | IPR001680 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | ProSiteProfiles | U-box domain profile. | 70 | 144 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lcy11g1702 | 611 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 333 | 365 | IPR001680 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | SMART | WD40_4 | 326 | 365 | IPR001680 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | SMART | WD40_4 | 371 | 410 | IPR001680 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | SMART | WD40_4 | 457 | 495 | IPR001680 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | SMART | WD40_4 | 413 | 454 | IPR001680 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | SMART | WD40_4 | 498 | 539 | IPR001680 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | SMART | WD40_4 | 560 | 601 | IPR001680 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | SMART | WD40_4 | 281 | 323 | IPR001680 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Lcy11g1702 | 611 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 464 | 497 | - | - | |
Lcy11g1702 | 611 | Pfam | Prp19/Pso4-like | 138 | 203 | IPR013915 | - | |
Lcy11g1702 | 611 | SUPERFAMILY | WD40 repeat-like | 294 | 600 | IPR036322 | GO:0005515(InterPro) | |
Lcy11g1702 | 611 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Lcy11g1702 | 611 | PANTHER | PRE-MRNA-PROCESSING FACTOR 19 | 79 | 601 | IPR038959 | GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0004842(PANTHER)|GO:0005737(PANTHER)|GO:0006281(InterPro)|GO:0061630(InterPro)|GO:0071006(PANTHER) | |
Lcy11g1702 | 611 | SMART | Ubox_2 | 74 | 140 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lcy11g1702 | 611 | SUPERFAMILY | RING/U-box | 79 | 127 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1702 | Lcy-Chr11:40902272 | Lcy8g1932 | Lcy-Chr8:45577372 | 2.05E-17 | dispersed | |
Lcy11g1702 | Lcy-Chr11:40902272 | Lcy8g0296 | Lcy-Chr8:8991831 | 2.27E-12 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1702 | K10599 | - | csv:101204424 | 978.778 |