Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1702 ATGTACAAGGAGCTGACGAGTACAACCCGACACGAGCCTAGAAATAGGACCAGAAAATGGACTCCGGAGGCGAAACGGGCCAAAAGGTCGGAGGGATCGGGCCTTGGCCCGACCCATATGGTCGGCCTCGACCTTTTCGCCTCCGTTCGGTCCCTGCTGCCCCTGACAGCCCCAATTCCACTCGGTTCAGTCCTGAATCGCCTCCGAACGCCTAGAAACCCTAGAGCAGGAACAATTTCCGGCGAGATTCCGGAAGAGCCAGTTGTCTCCAAGAATTCTGGATTGCTCTTCGAGAAGCGTTTAATCGAGAGGCACATTTCAGACTATGGGAAATGCCCTGTCACAGGTGAACCCCTTTCAATCGATGACATTGTTCCAATTAAAACTGGAAAGATAGTCAAGCCCAGGCAAGCCGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGTTTTGGTGCTGTCCAATTTTGCACTAGAGCAACAGCTGCATACAGCTAGACAGGAGCTTAGTCATGCCTTGTATCAGCATGATGCTGCATGTCGTGTAATTGCAAGACTTAAGAAAGAAAGGGATGAGGCTAGGTCATTACTTGCTCAGGCAGAGAGACAGATGCCCTTGTCATCAACTTCGATTTCATCCAATGCTGCTGTCAATGTTAATGGGAAAAGAGTTAATGAGGATGAGGAATTGGGTCCTGATGGGAAGAAAATACGTCCTGGAATATCAGCCACCGTTATCTCTGAGCTCACAGACTGTAATGCTGCTCTTTCACAACAAAGGAAGAGGCGTCAGATACCTCCTACGTTGGTTCCTGTTGAGGCTTTAGAAAGTTACACCCAGATTTCTAGTCATCCACTTCATAAAACAAACAAACCAGGGATTATATCTCTTGACATCCATCATGAGAAGGATGTCATTGCAACTGGAGGGCTGGACACAAATGCTGTTCTTTTTGGTCGATCATCTGGGGAGATTTTATCTACACTAAGTGGCCATTCAAAGAAGGTAACAAGTGTCAAATTTGTCGCCCGAGATGATTTATTCTTGACTGGTTCAGCTGACAAGACTGTACGTGTGTGGCAACAAGCTGATGATGGGAACTACAATTGTAGGCACATTTTAAAGGATCACACAGCTGAGGTCCAAGCTGTTACCGTCCATGCTACCAATAACTTCTTTGTCACTGCCTCCCTTGATAACACATGGTGTTTTTATGAGCTTGCTTCAGGACTATGCCTGACACAGGTTTCAGAGGCTTCAGGAACCGAGGGATACACATCTGCTGCCTTTCATCCCGATGGTCTCATCCTTGGAACAGGCACGTCGGAGGCCCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCCAGATTTGATGGACACGTTGGGGCAGTAACTGCTATATCTTTTTCTGAAAATGGTTACTTCCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAATTTCCGTACATTTGCACCTTATGATTCAGAAACTCCAACAAACTCCGTGGAATTTGACCATAGTGGATCTTACCTTGCGATTGCTGGCTCAGATATAAGTTCTTCAGTAATGCCTATAAAGTTTAATGTTGAGGCTTTAACGCGCAGAGTTTACCAAGTTGCTAGTGTGAAATCTGAATGGAATTGTATCAAAACTATTCCAGATTTGTCTGGCACAGGTAAAGCAACTTGCCTAAAGTTTGGTCCAGATGCAAAATACCTGGCAGTCGGGTCAATGGATCGAAATCTTCGGATTTTCGGTGTGCCTGGGGACGATGGCCCCATGGAGACATAA 1836 46.02 MYKELTSTTRHEPRNRTRKWTPEAKRAKRSEGSGLGPTHMVGLDLFASVRSLLPLTAPIPLGSVLNRLRTPRNPRAGTISGEIPEEPVVSKNSGLLFEKRLIERHISDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSISSNAAVNVNGKRVNEDEELGPDGKKIRPGISATVISELTDCNAALSQQRKRRQIPPTLVPVEALESYTQISSHPLHKTNKPGIISLDIHHEKDVIATGGLDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVARDDLFLTGSADKTVRVWQQADDGNYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYELASGLCLTQVSEASGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETPTNSVEFDHSGSYLAIAGSDISSSVMPIKFNVEALTRRVYQVASVKSEWNCIKTIPDLSGTGKATCLKFGPDAKYLAVGSMDRNLRIFGVPGDDGPMET 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40902272 40911125 + Maker00031706 Lcy11g1702 647603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1702 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 463 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 Coils Coil 187 207 - -
Lcy11g1702 611 Gene3D - 273 600 IPR015943 GO:0005515(InterPro)
Lcy11g1702 611 FunFam pre-mRNA-processing factor 19 270 602 - -
Lcy11g1702 611 CDD WD40 297 600 - -
Lcy11g1702 611 CDD RING-Ubox_PRP19 79 128 - -
Lcy11g1702 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 134 IPR013083 -
Lcy11g1702 611 FunFam Pre-mRNA-processing factor 19, putative 77 132 - -
Lcy11g1702 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 464 504 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 333 365 - -
Lcy11g1702 611 Pfam WD domain, G-beta repeat 459 495 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 Pfam WD domain, G-beta repeat 328 364 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 Pfam WD domain, G-beta repeat 563 600 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 Pfam WD domain, G-beta repeat 429 454 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 Pfam WD domain, G-beta repeat 373 409 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy11g1702 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 365 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 SMART WD40_4 326 365 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 SMART WD40_4 371 410 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 SMART WD40_4 457 495 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 SMART WD40_4 413 454 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 SMART WD40_4 498 539 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 SMART WD40_4 560 601 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 SMART WD40_4 281 323 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 MobiDBLite consensus disorder prediction 1 32 - -
Lcy11g1702 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 464 497 - -
Lcy11g1702 611 Pfam Prp19/Pso4-like 138 203 IPR013915 -
Lcy11g1702 611 SUPERFAMILY WD40 repeat-like 294 600 IPR036322 GO:0005515(InterPro)
Lcy11g1702 611 MobiDBLite consensus disorder prediction 1 35 - -
Lcy11g1702 611 PANTHER PRE-MRNA-PROCESSING FACTOR 19 79 601 IPR038959 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0004842(PANTHER)|GO:0005737(PANTHER)|GO:0006281(InterPro)|GO:0061630(InterPro)|GO:0071006(PANTHER)
Lcy11g1702 611 SMART Ubox_2 74 140 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy11g1702 611 SUPERFAMILY RING/U-box 79 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1702 K10599 - - csv:101204424 978.778
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1702 Lcy-Chr11:40902272 Lcy8g1932 Lcy-Chr8:45577372 2.05E-17 dispersed
Lcy11g1702 Lcy-Chr11:40902272 Lcy8g0296 Lcy-Chr8:8991831 2.27E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g778 . . . . . Bpe14g01276 . . . . Cma06g01297 Cma14g01841 Car06g01113 Car14g01649 Sed02g1438 Cpe08g00356 Cpe03g01541 Bhi01g00680 Tan10g0634 Cmetu06g0539 . Hepe05g1688 . Lcy11g1702 . . . . . . . Cone14ag0178 Cone15ag0188 . . Lsi05g01766 . . Cme06g00455 Blo02g00770 . Bda11g00647 Bda13g00041 . Bpe13g00538 Bma02g00753 Bma06g01616 . Cmo06g01305 Cmo14g01882 . . . . . . . . . . . . . Cla05g00413 Cam05g0451 Cec05g0458 Cco05g0459 Clacu05g0448 Cmu05g0425 Cre05g0488 . Csa03g01174 Chy06g00436 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g0640 . 1 871 U-box Gene Family AT5G15400 77.2 0.0e+00 1347.0
Lcy10g0639 . 22 202 U-box Gene Family AT5G15400 71.3 6.9e-67 253.4
Lcy8g0814 . 282 924 U-box Gene Family AT2G23140 66.1 2.7e-122 436.8
Lcy13g1697 . 1 775 U-box Gene Family AT1G24330 59.4 8.3e-243 837.4
Lcy7g0059 . 32 540 U-box Gene Family AT1G24330 66.3 4.7e-185 645.6
Lcy13g1697 . 1 774 U-box Gene Family AT1G67530 59.8 2.1e-241 832.8
Lcy7g0059 . 32 540 U-box Gene Family AT1G67530 66.7 2.4e-181 633.3
Lcy1g0403 . 1 362 U-box Gene Family AT4G21350 63.4 2.1e-122 436.4
Lcy5g1148 . 1 339 U-box Gene Family AT4G21350 61.9 3.1e-110 396.0
Lcy12g2016 . 134 457 U-box Gene Family AT3G07360 56.8 4.8e-83 305.4
Lcy7g1209 . 290 485 U-box Gene Family AT1G71020 68.7 6.7e-73 272.3
Lcy10g1442 . 761 965 U-box Gene Family AT1G71020 52.7 2.6e-53 207.2
Lcy11g0195 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Lcy7g0632 . 213 416 U-box Gene Family AT1G71020 52.2 1.7e-47 188.0
Lcy8g1815 . 256 426 U-box Gene Family AT1G71020 56.5 8.2e-47 185.7
Lcy7g1209 . 16 689 U-box Gene Family AT1G23030 54.6 2.0e-106 384.0
Lcy11g0195 . 93 632 U-box Gene Family AT2G28830 59.2 5.4e-101 365.9
Lcy8g1815 . 93 635 U-box Gene Family AT2G28830 50.8 5.0e-99 359.4
Lcy11g0195 . 1 634 U-box Gene Family AT3G46510 70.1 6.8e-169 591.7
Lcy8g1815 . 3 633 U-box Gene Family AT3G46510 67.8 3.3e-163 572.8
Lcy7g0632 . 9 623 U-box Gene Family AT3G46510 59.3 4.8e-122 436.0
Lcy7g0632 . 1 625 U-box Gene Family AT3G54850 69.0 1.0e-166 584.3
Lcy8g1815 . 13 629 U-box Gene Family AT3G54850 57.5 3.2e-115 413.3
Lcy11g0195 . 8 627 U-box Gene Family AT3G54850 55.6 8.1e-103 372.1
Lcy8g1307 . 98 650 U-box Gene Family AT5G42340 65.6 5.5e-126 449.1
Lcy7g0632 . 78 622 U-box Gene Family AT5G42340 51.4 3.6e-69 260.4
Lcy1g1614 . 9 671 U-box Gene Family AT5G01830 57.3 9.3e-198 687.6
Lcy5g1804 . 1 714 U-box Gene Family AT1G29340 64.2 7.9e-251 864.0
Lcy5g0496 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy5g2618 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy1g1656 . 10 422 U-box Gene Family AT3G52450 53.0 6.2e-118 421.8
Lcy5g0496 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy5g2618 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy1g1656 . 9 422 U-box Gene Family AT2G35930 50.7 2.3e-114 409.8
Lcy6g0515 . 1 400 U-box Gene Family AT3G19380 62.9 1.2e-134 477.2
Lcy6g0515 . 1 400 U-box Gene Family AT1G49780 63.1 2.6e-137 486.1
Lcy9g2015 . 1 454 U-box Gene Family AT3G49810 65.1 8.8e-160 560.8
Lcy13g2147 . 1 453 U-box Gene Family AT3G49810 63.1 1.4e-152 537.0
Lcy9g2015 . 1 454 U-box Gene Family AT5G65920 63.7 4.6e-153 538.5
Lcy13g2147 . 1 453 U-box Gene Family AT5G65920 63.7 1.9e-151 533.1
Lcy11g1973 . 1 891 U-box Gene Family AT2G45910 51.3 3.9e-230 795.4
Lcy13g0695 . 38 344 U-box Gene Family AT2G45910 63.9 9.7e-112 402.1
Lcy4g2245 . 4 726 U-box Gene Family AT2G19410 51.1 1.3e-214 743.8
Lcy4g1566 . 364 762 U-box Gene Family AT2G19410 50.1 3.1e-104 377.1
Lcy12g1430 . 25 856 U-box Gene Family AT4G25160 51.9 1.3e-217 753.8
Lcy10g1953 . 1 550 U-box Gene Family AT5G40140 54.4 2.2e-96 350.5
Lcy5g2248 . 29 493 U-box Gene Family AT5G40140 51.9 1.4e-55 214.9
Lcy13g1697 . 1 778 U-box Gene Family AT1G27910 63.2 8.8e-269 923.7
Lcy7g0059 . 32 540 U-box Gene Family AT1G27910 66.7 1.5e-180 630.6
Lcy1g0914 . 1 594 U-box Gene Family AT5G67530 75.2 2.3e-264 908.7
Lcy11g1908 . 2 164 U-box Gene Family AT5G67530 50.9 4.0e-43 173.7
Lcy5g0439 . 12 156 U-box Gene Family AT5G67530 50.3 2.3e-38 157.9
Lcy1g0837 . 54 840 U-box Gene Family AT5G65500 50.6 2.4e-208 723.0
Lcy11g1702 . 79 606 U-box Gene Family AT1G04510 72.7 3.7e-218 755.0
Lcy11g1702 . 79 575 U-box Gene Family AT2G33340 71.5 4.8e-204 708.0
Lcy12g2017 . 5 278 U-box Gene Family AT3G07370 66.1 5.2e-102 368.2
Lcy10g0640 . 1 871 U-box Gene Family AT5G15400 77.2 0.0e+00 1347.0
Lcy10g0639 . 22 202 U-box Gene Family AT5G15400 71.3 6.9e-67 253.4
Lcy8g0814 . 282 924 U-box Gene Family AT2G23140 66.1 2.7e-122 436.8
Lcy13g1697 . 1 775 U-box Gene Family AT1G24330 59.4 8.3e-243 837.4
Lcy7g0059 . 32 540 U-box Gene Family AT1G24330 66.3 4.7e-185 645.6
Lcy13g1697 . 1 774 U-box Gene Family AT1G67530 59.8 2.1e-241 832.8
Lcy7g0059 . 32 540 U-box Gene Family AT1G67530 66.7 2.4e-181 633.3
Lcy1g0403 . 1 362 U-box Gene Family AT4G21350 63.4 2.1e-122 436.4
Lcy5g1148 . 1 339 U-box Gene Family AT4G21350 61.9 3.1e-110 396.0
Lcy12g2016 . 134 457 U-box Gene Family AT3G07360 56.8 4.8e-83 305.4
Lcy7g1209 . 290 485 U-box Gene Family AT1G71020 68.7 6.7e-73 272.3
Lcy10g1442 . 761 965 U-box Gene Family AT1G71020 52.7 2.6e-53 207.2
Lcy11g0195 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Lcy7g0632 . 213 416 U-box Gene Family AT1G71020 52.2 1.7e-47 188.0
Lcy8g1815 . 256 426 U-box Gene Family AT1G71020 56.5 8.2e-47 185.7
Lcy7g1209 . 16 689 U-box Gene Family AT1G23030 54.6 2.0e-106 384.0
Lcy11g0195 . 93 632 U-box Gene Family AT2G28830 59.2 5.4e-101 365.9
Lcy8g1815 . 93 635 U-box Gene Family AT2G28830 50.8 5.0e-99 359.4
Lcy11g0195 . 1 634 U-box Gene Family AT3G46510 70.1 6.8e-169 591.7
Lcy8g1815 . 3 633 U-box Gene Family AT3G46510 67.8 3.3e-163 572.8
Lcy7g0632 . 9 623 U-box Gene Family AT3G46510 59.3 4.8e-122 436.0
Lcy7g0632 . 1 625 U-box Gene Family AT3G54850 69.0 1.0e-166 584.3
Lcy8g1815 . 13 629 U-box Gene Family AT3G54850 57.5 3.2e-115 413.3
Lcy11g0195 . 8 627 U-box Gene Family AT3G54850 55.6 8.1e-103 372.1
Lcy8g1307 . 98 650 U-box Gene Family AT5G42340 65.6 5.5e-126 449.1
Lcy7g0632 . 78 622 U-box Gene Family AT5G42340 51.4 3.6e-69 260.4
Lcy1g1614 . 9 671 U-box Gene Family AT5G01830 57.3 9.3e-198 687.6
Lcy5g1804 . 1 714 U-box Gene Family AT1G29340 64.2 7.9e-251 864.0
Lcy5g0496 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy5g2618 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy1g1656 . 10 422 U-box Gene Family AT3G52450 53.0 6.2e-118 421.8
Lcy5g0496 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy5g2618 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy1g1656 . 9 422 U-box Gene Family AT2G35930 50.7 2.3e-114 409.8
Lcy6g0515 . 1 400 U-box Gene Family AT3G19380 62.9 1.2e-134 477.2
Lcy6g0515 . 1 400 U-box Gene Family AT1G49780 63.1 2.6e-137 486.1
Lcy9g2015 . 1 454 U-box Gene Family AT3G49810 65.1 8.8e-160 560.8
Lcy13g2147 . 1 453 U-box Gene Family AT3G49810 63.1 1.4e-152 537.0
Lcy9g2015 . 1 454 U-box Gene Family AT5G65920 63.7 4.6e-153 538.5
Lcy13g2147 . 1 453 U-box Gene Family AT5G65920 63.7 1.9e-151 533.1
Lcy11g1973 . 1 891 U-box Gene Family AT2G45910 51.3 3.9e-230 795.4
Lcy13g0695 . 38 344 U-box Gene Family AT2G45910 63.9 9.7e-112 402.1
Lcy4g2245 . 4 726 U-box Gene Family AT2G19410 51.1 1.3e-214 743.8
Lcy4g1566 . 364 762 U-box Gene Family AT2G19410 50.1 3.1e-104 377.1
Lcy12g1430 . 25 856 U-box Gene Family AT4G25160 51.9 1.3e-217 753.8
Lcy10g1953 . 1 550 U-box Gene Family AT5G40140 54.4 2.2e-96 350.5
Lcy5g2248 . 29 493 U-box Gene Family AT5G40140 51.9 1.4e-55 214.9
Lcy13g1697 . 1 778 U-box Gene Family AT1G27910 63.2 8.8e-269 923.7
Lcy7g0059 . 32 540 U-box Gene Family AT1G27910 66.7 1.5e-180 630.6
Lcy1g0914 . 1 594 U-box Gene Family AT5G67530 75.2 2.3e-264 908.7
Lcy11g1908 . 2 164 U-box Gene Family AT5G67530 50.9 4.0e-43 173.7
Lcy5g0439 . 12 156 U-box Gene Family AT5G67530 50.3 2.3e-38 157.9
Lcy1g0837 . 54 840 U-box Gene Family AT5G65500 50.6 2.4e-208 723.0
Lcy11g1702 . 79 606 U-box Gene Family AT1G04510 72.7 3.7e-218 755.0
Lcy11g1702 . 79 575 U-box Gene Family AT2G33340 71.5 4.8e-204 708.0
Lcy12g2017 . 5 278 U-box Gene Family AT3G07370 66.1 5.2e-102 368.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004919 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41