Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1702 ATGTACAAGGAGCTGACGAGTACAACCCGACACGAGCCTAGAAATAGGACCAGAAAATGGACTCCGGAGGCGAAACGGGCCAAAAGGTCGGAGGGATCGGGCCTTGGCCCGACCCATATGGTCGGCCTCGACCTTTTCGCCTCCGTTCGGTCCCTGCTGCCCCTGACAGCCCCAATTCCACTCGGTTCAGTCCTGAATCGCCTCCGAACGCCTAGAAACCCTAGAGCAGGAACAATTTCCGGCGAGATTCCGGAAGAGCCAGTTGTCTCCAAGAATTCTGGATTGCTCTTCGAGAAGCGTTTAATCGAGAGGCACATTTCAGACTATGGGAAATGCCCTGTCACAGGTGAACCCCTTTCAATCGATGACATTGTTCCAATTAAAACTGGAAAGATAGTCAAGCCCAGGCAAGCCGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGTTTTGGTGCTGTCCAATTTTGCACTAGAGCAACAGCTGCATACAGCTAGACAGGAGCTTAGTCATGCCTTGTATCAGCATGATGCTGCATGTCGTGTAATTGCAAGACTTAAGAAAGAAAGGGATGAGGCTAGGTCATTACTTGCTCAGGCAGAGAGACAGATGCCCTTGTCATCAACTTCGATTTCATCCAATGCTGCTGTCAATGTTAATGGGAAAAGAGTTAATGAGGATGAGGAATTGGGTCCTGATGGGAAGAAAATACGTCCTGGAATATCAGCCACCGTTATCTCTGAGCTCACAGACTGTAATGCTGCTCTTTCACAACAAAGGAAGAGGCGTCAGATACCTCCTACGTTGGTTCCTGTTGAGGCTTTAGAAAGTTACACCCAGATTTCTAGTCATCCACTTCATAAAACAAACAAACCAGGGATTATATCTCTTGACATCCATCATGAGAAGGATGTCATTGCAACTGGAGGGCTGGACACAAATGCTGTTCTTTTTGGTCGATCATCTGGGGAGATTTTATCTACACTAAGTGGCCATTCAAAGAAGGTAACAAGTGTCAAATTTGTCGCCCGAGATGATTTATTCTTGACTGGTTCAGCTGACAAGACTGTACGTGTGTGGCAACAAGCTGATGATGGGAACTACAATTGTAGGCACATTTTAAAGGATCACACAGCTGAGGTCCAAGCTGTTACCGTCCATGCTACCAATAACTTCTTTGTCACTGCCTCCCTTGATAACACATGGTGTTTTTATGAGCTTGCTTCAGGACTATGCCTGACACAGGTTTCAGAGGCTTCAGGAACCGAGGGATACACATCTGCTGCCTTTCATCCCGATGGTCTCATCCTTGGAACAGGCACGTCGGAGGCCCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCCAGATTTGATGGACACGTTGGGGCAGTAACTGCTATATCTTTTTCTGAAAATGGTTACTTCCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAATTTCCGTACATTTGCACCTTATGATTCAGAAACTCCAACAAACTCCGTGGAATTTGACCATAGTGGATCTTACCTTGCGATTGCTGGCTCAGATATAAGTTCTTCAGTAATGCCTATAAAGTTTAATGTTGAGGCTTTAACGCGCAGAGTTTACCAAGTTGCTAGTGTGAAATCTGAATGGAATTGTATCAAAACTATTCCAGATTTGTCTGGCACAGGTAAAGCAACTTGCCTAAAGTTTGGTCCAGATGCAAAATACCTGGCAGTCGGGTCAATGGATCGAAATCTTCGGATTTTCGGTGTGCCTGGGGACGATGGCCCCATGGAGACATAA 1836 46.02 MYKELTSTTRHEPRNRTRKWTPEAKRAKRSEGSGLGPTHMVGLDLFASVRSLLPLTAPIPLGSVLNRLRTPRNPRAGTISGEIPEEPVVSKNSGLLFEKRLIERHISDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSISSNAAVNVNGKRVNEDEELGPDGKKIRPGISATVISELTDCNAALSQQRKRRQIPPTLVPVEALESYTQISSHPLHKTNKPGIISLDIHHEKDVIATGGLDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVARDDLFLTGSADKTVRVWQQADDGNYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYELASGLCLTQVSEASGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETPTNSVEFDHSGSYLAIAGSDISSSVMPIKFNVEALTRRVYQVASVKSEWNCIKTIPDLSGTGKATCLKFGPDAKYLAVGSMDRNLRIFGVPGDDGPMET 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40902272 40911125 + Maker00031706 Lcy11g1702 647603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1702 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 463 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 Coils Coil 187 207 - -
Lcy11g1702 611 Gene3D - 273 600 IPR015943 GO:0005515(InterPro)
Lcy11g1702 611 FunFam pre-mRNA-processing factor 19 270 602 - -
Lcy11g1702 611 CDD WD40 297 600 - -
Lcy11g1702 611 CDD RING-Ubox_PRP19 79 128 - -
Lcy11g1702 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 134 IPR013083 -
Lcy11g1702 611 FunFam Pre-mRNA-processing factor 19, putative 77 132 - -
Lcy11g1702 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 464 504 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 333 365 - -
Lcy11g1702 611 Pfam WD domain, G-beta repeat 459 495 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 Pfam WD domain, G-beta repeat 328 364 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 Pfam WD domain, G-beta repeat 563 600 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 Pfam WD domain, G-beta repeat 429 454 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 Pfam WD domain, G-beta repeat 373 409 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy11g1702 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 365 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 SMART WD40_4 326 365 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 SMART WD40_4 371 410 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 SMART WD40_4 457 495 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 SMART WD40_4 413 454 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 SMART WD40_4 498 539 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 SMART WD40_4 560 601 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 SMART WD40_4 281 323 IPR001680 GO:0005515(InterPro)
Lcy11g1702 611 MobiDBLite consensus disorder prediction 1 32 - -
Lcy11g1702 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 464 497 - -
Lcy11g1702 611 Pfam Prp19/Pso4-like 138 203 IPR013915 -
Lcy11g1702 611 SUPERFAMILY WD40 repeat-like 294 600 IPR036322 GO:0005515(InterPro)
Lcy11g1702 611 MobiDBLite consensus disorder prediction 1 35 - -
Lcy11g1702 611 PANTHER PRE-MRNA-PROCESSING FACTOR 19 79 601 IPR038959 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0004842(PANTHER)|GO:0005737(PANTHER)|GO:0006281(InterPro)|GO:0061630(InterPro)|GO:0071006(PANTHER)
Lcy11g1702 611 SMART Ubox_2 74 140 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy11g1702 611 SUPERFAMILY RING/U-box 79 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1702 Lcy-Chr11:40902272 Lcy8g1932 Lcy-Chr8:45577372 2.05E-17 dispersed
Lcy11g1702 Lcy-Chr11:40902272 Lcy8g0296 Lcy-Chr8:8991831 2.27E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1702 K10599 - csv:101204424 978.778