Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1719 ATGGATTCAGGCTTCTGCTCCTCCCATCTCTCCGACCTCTTCGGCCCCAACACCACCAACGCCACCGGCGCTGCAAATTTCATCTGCGACCAACTCACCACCATCTCCAACAACTTCTCCGATACCAAAAACGCTCTCGACAACACCTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCCATGCAACTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGCGCCAAGAACACCATGAACATCATGCTCACCAACGTTCTCGATGCCGCCGCCGGTGGCCTCTTCTACTACCTCTTCGGCTACGCCTTCGCCTTCGGTGCCCCCTCCAACGGCTTCATCGGCCGCCACAACTTCGGCCTCACCTCCTTCCCGACCTCCACCGCCGATTACAGCGTCTTCCTCTACCAGTGGGCCTTCGCCATCGCCGCCGCCGGGATTACCAGCGGATCCATCGCCGAGCGGACTCAGTTCGTCGCCTACTTGATCTACTCCTCTGTTTTGACCGGCTTCGTTTATCCGGTCGTTTCTCATTGGTTCTGGTCGCCCGATGGCTGGGCTGGGGCTGTGAAATCCGGAGGCGGATTGTTGTTTGGATCTGGAGTGATCGACTTCGCCGGCTCCGGCGTCGTCCATATGGTTGGGGGAATTGCAGGTCTGTGGGGCGCGTTGATTGAGGGGCCGAGAATCGGTCGATACGACCACTCCGGCCGGTCGGTGGCTCTGCGAGGGCACAGCGCCTCTTTAGTTGTGCTCGGAACTTTCATGCTCTGGTTCGGATGGTACGGTTTCAATCCAGGTTCCTTCACGAAGATTCTCGTTCCATACACCACCGGAAACTTCTACGGCCAGTGGAGCGCCGTCGGACGGACGGCGGTGACCACCACGCTCGCTGGATGCACGGCGGCGCTCACCACGCTCTTCGGGAAAAGATTCCTCTCCGGCCACTGGAACGTGACGGACGTTTGCAACGGACTCCTTGGCGGCTTCGCCGCCATCACCGCCGGCTGCTCCGTCGTCGAGCCCTGGGCGGCGATCATCTGCGGCTTCGTCGCCGCCATCGTTCTTATATCCTGCAACCGTCTCGCCGAGATGGTGAAGTACGACGATCCTCTAGAAGCCGCCCAACTCCACGGCGGCTGCGGCGCGTGGGGAGTGATTTTCACAGCCCTCTTCGCGAAGAAAGAATACGTGACAGAGGTGTACGGCGGATCCGGCCGTCCATACGGACTCCTGATGGGCGGCGGCGGAAGGTTGCTGGCGGCCCATTTGATACAGATTCTGGTGATCGTGGGATGGGTGAGTGCAACGATGGGGCCATTGTTCTTCGTTCTGCACAAACTGAATCTTCTGAGAATCTCCAGTGAAGATGAAATGGCGGGGATGGATCTGACCCGCCATGGAGGATTTGCTTACATTTATCACGATGAAGATGATGAAAAGAAAAGAGGGATCCAGTTGAGCAGAGTAGAACCGAAATCTGGAACTCCGACGGGAGATTATTGA 1503 58.55 MDSGFCSSHLSDLFGPNTTNATGAANFICDQLTTISNNFSDTKNALDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGAPSNGFIGRHNFGLTSFPTSTADYSVFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWAGAVKSGGGLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRYDHSGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILVPYTTGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAAIVLISCNRLAEMVKYDDPLEAAQLHGGCGAWGVIFTALFAKKEYVTEVYGGSGRPYGLLMGGGGRLLAAHLIQILVIVGWVSATMGPLFFVLHKLNLLRISSEDEMAGMDLTRHGGFAYIYHDEDDEKKRGIQLSRVEPKSGTPTGDY 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41051676 41053178 + Maker00031683 Lcy11g1719 647620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1719 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy11g1719 500 Pfam Ammonium Transporter Family 50 471 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy11g1719 500 Gene3D Ammonium transporter AmtB like domains 25 490 IPR029020 -
Lcy11g1719 500 FunFam Ammonium transporter 28 486 - -
Lcy11g1719 500 NCBIfam ammonium transporter 47 471 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy11g1719 500 SUPERFAMILY Ammonium transporter 44 452 - -
Lcy11g1719 500 PANTHER AMMONIUM TRANSPORTER 25 480 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1719 Lcy-Chr11:41051676 Lcy13g0436 Lcy-Chr13:5033901 2.12E-293 dispersed
Lcy11g1719 Lcy-Chr11:41051676 Lcy12g2072 Lcy-Chr12:42103574 2.56E-246 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1719 K03320 - csv:101208366 902.508