Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy11g1722 | ATGGCTGGTCAAGTAAACCTAGTGGTTGGATGTCTTGTTTGGATTGAGGATCCTGAGGTAGCCTGGATAGATGGGGAAGTAGTGGAAGTTAATGGTCAAGATATCAAAGTACTCTGTACAACAGGAAATACTGTTGAGGTCAAATCACCAAATGTCTATCCGAAGGATCCTGAATTTCCAGAATGTGGTGTGGATGATATGACAAAACTAGCTTACTTGCACGAGCCAGGACTTCTACTAAACTTAAAATCTCGTTATGATGTTAATGAAATTTATACATACACTGGAGGTATACTAATAGCTGTAAATCCTTTTCGAAGACTTCCTCATTTATATGATAGTGACATAATGCAACAATATAAAGGTGCAGCTTTAGGTGAGCTGAGCCCGCATCCCTTTGCCATTGCGAATTCTGCTTATAGACAGATGATTAACGAGAGTATCAGCCAGTCAATTTTAGTTAGCGGGGAAAGTGGAGCTGGTAAAACGGAAAGTACAAAGATGCTTATGCGCTATCTTGCCCATGTTGGAGGGAGAGCTGGAGGGAAGGCTGCAACTGGTGAACGTTCTGTTGAGCAGCAAGTACTAGAGTCCAACCCTGTTCTAGAAGCATTTGGCAATGCAAAGACTGTTAGAAACAATAATTCAAGTCGGTTTGGTAAATTTGTGGAGATCCAATTTGATCAAAGTTGGAGAATTTCTGGAGCTGCCATCAGAACTTATTTATTAGAACGTTCCCGTGTTTGCCAAGTCTCTGATCCTGAGAGGAATTATCATTGCTTTTATATGCTTTGTGCTGCACCACCAGAGGAAATTGAAAAGTATAAATTAGGGAATCCAAGATCATTTCATTATCTTAATCAATCTAATTGCTACGAACTTGATGGAGTGGATGATTCAAAGGAATACCTTTCTACTAGGGAAGCTATGGATGTTGTTGGAATAAGTACAGCTGAGCAGGATGCTATATTTCGAGTCGTAGCTGCAGTACTTCATTTGGGCAATGTTGAATTTGCAAAGGGGAAGGATGTGGATTCCTCTGAACCTAAGGATGACAAAGCTCGGTTCCATCTCAAAATGGCAGCAGAACTATTCATGTGTGATGAGAAGGCTCTTGAAGATTCAATGTGTACTCGTGTGATAGTTACACGTGATGAAACCATAACTAAATGTCTCGATCCAGACTCTGCAACTCTTAGTAGGGATGCTTTAGCCAAAATTGTTTATTCAAGATTATTTGATTGGATTGTTGATAAGATTAATAACTCAATTGGCCAAGATCCTGGTTCAAAGCACTTAATTGGGGTTCTGGATATCTATGGATTCGAGAGTTTCAAGACAAACAGGTGCTTAACTGTAAATGCCCAAGACTTTGAGCAATTCTGTATTAACCTGACAAATGAGAAATTGCAGCAACATTTCAACCAGCACGTGTTCAAGATGGAGCAAGAAGAATATACAAAAGAAGAAATTGACTGGAGTTATATTGAATTTATCGATAATCAGGATGTTCTTGATCTCATTGAGAAGAAACCTGGTGGTGTCATTGCTCTTCTGGATGAGGCTTGCATGTTTCCGAGATCCACGCATGAAACTTTTGCACAGAAACTATATCAAACTTTTAAGGACCATAAGCGCTTTAGTAAGCCTAAATTGTCACGAACTGACTTCACAATTTGTCATTATGCTGGTGATGTTACGTACCAAACTGAACTCTTCTTGGACAAAAACAAAGATTATGTTGTTGCGGAGCATCAAGCACTGTTGAGTGCTTCTAAGTGCACCTTTGTTTCAGGGCTCTTCCCCCCCTTACCTGAAGAAACCTCCAAATCATCCAAGTTTTCATCAATAGGGACTAGATTTAAGGCGTGTTTCTGTTTTAACAGTATATTTCATTTAATGAAGCTTCAACAACTTCAATCTCTGCTCGAGACACTAAATGCTACTGAGCCACACTACATACGCTGTGTAAAGCCAAACAATCTTCTAAAACCATCCATCTTTGAGAATAATAATGTTTTACAGCAGCTCCGGTGTGGGGGAGTCATGGAAGCAATCAGGATCAGTTGTGCTGGATATCCCACTAGGAAGACGTTTGATGAATTCATTGGTCGGTTTACTATTTTGGCACCTGATGTTTTGAAGGGGAGCTCTGATGAAGCAACTGCGTGTAAGAGGCTTTTGCAGAAAGTTAAACTTAAAGGATATCAGATTGGTAAAACCAAAGTGTTTCTCAGGGCTGGTCAAATGGCAGAATTAGATGCTTGCCGAACTGAGGTCTTGGGAAGATCTGCTATTGTTATCCAAAGGAAAGTTCGCTCATATTTGGCACGCAAACACTTTATTTTGTTGCGGTTGGCTGCTATACAAATTCAAGCCCTGTGTAGAGGGGAAGTTGCACGCCAGCAGTATGAAAACATCAGAAGGGAAGCTGCTTCTATCAAAATCCAAAAGTATTGGCGCATGTATTTTGCCCGAAGTTGCTATAAAAGATTGTGCTCTTCAGCTGTAGCTATTCAATCTGGTATCTATGGTATGGTTGCTCGTAAAGAGCTTAAGTTCAGGAGGCAGACAAGAGCTGCAATTATCATTCAGAGTCGGTGTCGGCAATACTTTGCTCGTAAGCATTATTTGAGGACAAAAAAAGCTGCAATTACCACTCAATGTGCAATGAGAGGAAGAGTTGCACGCAGAGAACTCCGAAAGCTTAAAATGGCTGCTAAGGAAACTGGCGCCCTCCAAGCTGCCAAAAATTTGCTGGAGAAGCAAGTGGAAGAACTAACATGGAGATTGCAGCTAGAGAACCGAATGAGGGTATACATCTTCCCCATGTATATCTATACTGGATATCCCAATATTGTCCCTATACTTTTACTTGGGATATATGCTGACATGGAGGAAGCCAAGACTCAAGAAAACACAAAATTGAAGTCTGATTTGGAAGAAATGAGAACTCAATTTCAGGAAACGAAGGCACTGCTTATTGAGGAACGTGAAGCTGCAAAGAAAGCAGTTGAGGAATGTGAAGCTGCAAAGAAAGCACTTGAGGAATGTGAAGCTGCAAAGAAAGCTGTTGAGGAACGTGAAGCTGCAGAGAAAGCAGTTGAGGAACGTGCAGCTTCAGAGAAAGCAGTTGAGGAACGTGAAACTTCAGAGAAAGCAGTTGAGGAACGTGAAGCTGCAGAGAAAGCAGTTGAGGAACGTGATGCTGCAGAGAAAGCAGTTGAGGAACGTGAATCTGCAGAGAAAGCAGTTGAGGAACGTGAATCTGCAGAGGCAGTAGTTGAGGAACGTGAATCTGCCAAGAAAGTAGTTGAGGAACGTGAATCTGCAAAGAAAGTAGTTGAGAAAGTCCCAGTCATACAGGAGGTTCTCGTTGTTGATCATGAGCTGATCAATAAGCTAAGTACTGAAAATGAAGAACTTAAGGTCTGGTTTTCAAATCTTACATTAATGTGGATGTTGATTTTCTGGCTTGAGGAAAAAATAGCTGACTTGGAAACTGAGGACCAAATTTTGAGGCAGCAAACACTGCTAAAGCCTCCTTCAAGAAAAATGTCTGGACAAATGTCTGGACGTATAACAATTGCACCCAATCAGCCTTCGGAAAATGGCTACCATGAATTACTAAGCCAGGCACCATCAAAAAAGTTTGGTACCGATGCTGATGCAAAATTGAGGAGATCCCAAATTGAAAGGCAGAACGAAGGCATGGATGCTCTATCGAAATACTTGACACAGGACCTTGGGTACAGTGAGGGAAAACCTGTTGCTGCTTTTGTAATTTATAAATCTCTTCTCCATTGGAAGTCATTTGAAGCAGAAAAAACAAGTGTTTTTGATCGGCTTATTCAGCTGATTGGTTCTGCTATTGAGAATCAGGATGATAATGAACATATGGCTTATTGGTTATCCAACACAACTACATTGTTGTTTCTTCTTCAAAAGAGTTTAAAAGCCACACCACGAAAGCCTCCCACCCCGACATCATTGTTTGAGCGAATGACCCAAGGGTTTCGTTCATCTTCTGCCAACCTTCCAGTTGGCACCCTTGATGTGGTGCGGCAAGTTGAGGCCAAATATCCTGCTCTACTTTTCAAGCAGCAGCTAACAGCGTATGTAGAAAAGATATATGCAATAGTTAGAGACAACCTAAAGAAGGAACTATCGCCGTTGCTTTCAACTTGTATCCAGGCTCCCAGATCTCCGAGAGGAAATATTTTAGAATCATCTGACCAGGAAAATAGTAGTAGCCCTCCCAGTAGTCCATGGAGCAGCATCATCGATAACCTTAATGATCATCTTTGTAGATTGCAGAAGAACTGCGTGCCTGCCGTTTTGGTCCAGAAGATATTCACTCAGGTTTTTTCATACGTCAATGTACAGCTTTTCAATAGTCTTCTACTTCGTCGAGAGTGCTGCACATTTAGCAACGGAGAATATGTGAAGTCAGGCCTGGACGAATTAGAGATTTGGTGTGGCCAAGCAAAAGAAGAGTATGCTGGGTCGTCTTGGGATGAGCTAAAACCGGTGAGGCAAGCTGTTGGATTTTTGGTTATTCACCAGAAGTCTAGAATATCTTATGATGAAATTACAAATGACCTCTGTCCAATATTGAGTGTGCAGCAGCTTTATAGAATATGTACTCTTTATTGCGACGAAAATTACAATACTACGAGCGTAGCTCCAGATGTTATTTCTAGCATGAAGGTTATGATGACTGAGGATTCCAATGATGAAGACAGTAGTTCCTTTTTGTTGGATGACAATTCCAGTATACCTTTCTCAGTTGAAGACATATCCACTTCCCTGCAAGAAAAGAATTTTCAAGATATAAAGCCTCCAGCAGAACTACTTGAGAATCCGGTCTTCCAATTTTTACAGGAATAA | 4890 | 41.02 | MAGQVNLVVGCLVWIEDPEVAWIDGEVVEVNGQDIKVLCTTGNTVEVKSPNVYPKDPEFPECGVDDMTKLAYLHEPGLLLNLKSRYDVNEIYTYTGGILIAVNPFRRLPHLYDSDIMQQYKGAALGELSPHPFAIANSAYRQMINESISQSILVSGESGAGKTESTKMLMRYLAHVGGRAGGKAATGERSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQSWRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEEIEKYKLGNPRSFHYLNQSNCYELDGVDDSKEYLSTREAMDVVGISTAEQDAIFRVVAAVLHLGNVEFAKGKDVDSSEPKDDKARFHLKMAAELFMCDEKALEDSMCTRVIVTRDETITKCLDPDSATLSRDALAKIVYSRLFDWIVDKINNSIGQDPGSKHLIGVLDIYGFESFKTNRCLTVNAQDFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFIDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAQKLYQTFKDHKRFSKPKLSRTDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCTFVSGLFPPLPEETSKSSKFSSIGTRFKACFCFNSIFHLMKLQQLQSLLETLNATEPHYIRCVKPNNLLKPSIFENNNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFIGRFTILAPDVLKGSSDEATACKRLLQKVKLKGYQIGKTKVFLRAGQMAELDACRTEVLGRSAIVIQRKVRSYLARKHFILLRLAAIQIQALCRGEVARQQYENIRREAASIKIQKYWRMYFARSCYKRLCSSAVAIQSGIYGMVARKELKFRRQTRAAIIIQSRCRQYFARKHYLRTKKAAITTQCAMRGRVARRELRKLKMAAKETGALQAAKNLLEKQVEELTWRLQLENRMRVYIFPMYIYTGYPNIVPILLLGIYADMEEAKTQENTKLKSDLEEMRTQFQETKALLIEEREAAKKAVEECEAAKKALEECEAAKKAVEEREAAEKAVEERAASEKAVEERETSEKAVEEREAAEKAVEERDAAEKAVEERESAEKAVEERESAEAVVEERESAKKVVEERESAKKVVEKVPVIQEVLVVDHELINKLSTENEELKVWFSNLTLMWMLIFWLEEKIADLETEDQILRQQTLLKPPSRKMSGQMSGRITIAPNQPSENGYHELLSQAPSKKFGTDADAKLRRSQIERQNEGMDALSKYLTQDLGYSEGKPVAAFVIYKSLLHWKSFEAEKTSVFDRLIQLIGSAIENQDDNEHMAYWLSNTTTLLFLLQKSLKATPRKPPTPTSLFERMTQGFRSSSANLPVGTLDVVRQVEAKYPALLFKQQLTAYVEKIYAIVRDNLKKELSPLLSTCIQAPRSPRGNILESSDQENSSSPPSSPWSSIIDNLNDHLCRLQKNCVPAVLVQKIFTQVFSYVNVQLFNSLLLRRECCTFSNGEYVKSGLDELEIWCGQAKEEYAGSSWDELKPVRQAVGFLVIHQKSRISYDEITNDLCPILSVQQLYRICTLYCDENYNTTSVAPDVISSMKVMMTEDSNDEDSSSFLLDDNSSIPFSVEDISTSLQEKNFQDIKPPAELLENPVFQFLQE | 1629 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 41071440 | 41091318 | + | Maker00031620 | Lcy11g1722 | 647623 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy11g1722 | 1629 | Gene3D | Kinesin motor domain | 65 | 688 | IPR036961 | - | |
| Lcy11g1722 | 1629 | ProSiteProfiles | IQ motif profile. | 880 | 909 | - | - | |
| Lcy11g1722 | 1629 | Pfam | IQ calmodulin-binding motif | 787 | 804 | IPR000048 | GO:0005515(InterPro) | |
| Lcy11g1722 | 1629 | Pfam | IQ calmodulin-binding motif | 811 | 830 | IPR000048 | GO:0005515(InterPro) | |
| Lcy11g1722 | 1629 | Pfam | IQ calmodulin-binding motif | 858 | 877 | IPR000048 | GO:0005515(InterPro) | |
| Lcy11g1722 | 1629 | Pfam | IQ calmodulin-binding motif | 882 | 901 | IPR000048 | GO:0005515(InterPro) | |
| Lcy11g1722 | 1629 | Pfam | IQ calmodulin-binding motif | 763 | 781 | IPR000048 | GO:0005515(InterPro) | |
| Lcy11g1722 | 1629 | Coils | Coil | 1044 | 1101 | - | - | |
| Lcy11g1722 | 1629 | FunFam | Myosin 2 | 316 | 433 | - | - | |
| Lcy11g1722 | 1629 | FunFam | Myosin XI D | 761 | 810 | - | - | |
| Lcy11g1722 | 1629 | Gene3D | - | 256 | 314 | - | - | |
| Lcy11g1722 | 1629 | ProSiteProfiles | IQ motif profile. | 763 | 790 | - | - | |
| Lcy11g1722 | 1629 | ProSiteProfiles | IQ motif profile. | 809 | 838 | - | - | |
| Lcy11g1722 | 1629 | MobiDBLite | consensus disorder prediction | 1403 | 1423 | - | - | |
| Lcy11g1722 | 1629 | FunFam | Myosin heavy chain | 256 | 311 | - | - | |
| Lcy11g1722 | 1629 | SMART | iq_5 | 760 | 782 | IPR000048 | GO:0005515(InterPro) | |
| Lcy11g1722 | 1629 | SMART | iq_5 | 808 | 830 | IPR000048 | GO:0005515(InterPro) | |
| Lcy11g1722 | 1629 | SMART | iq_5 | 831 | 853 | IPR000048 | GO:0005515(InterPro) | |
| Lcy11g1722 | 1629 | SMART | iq_5 | 783 | 805 | IPR000048 | GO:0005515(InterPro) | |
| Lcy11g1722 | 1629 | SMART | iq_5 | 856 | 878 | IPR000048 | GO:0005515(InterPro) | |
| Lcy11g1722 | 1629 | SMART | iq_5 | 879 | 901 | IPR000048 | GO:0005515(InterPro) | |
| Lcy11g1722 | 1629 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 316 | 613 | - | - | |
| Lcy11g1722 | 1629 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy11g1722 | 1629 | PANTHER | MYOSIN | 856 | 1574 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Lcy11g1722 | 1629 | Pfam | Myosin N-terminal SH3-like domain | 12 | 49 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy11g1722 | 1629 | Gene3D | - | 811 | 859 | - | - | |
| Lcy11g1722 | 1629 | Gene3D | - | 860 | 908 | - | - | |
| Lcy11g1722 | 1629 | Gene3D | - | 761 | 810 | - | - | |
| Lcy11g1722 | 1629 | PRINTS | Myosin heavy chain signature | 433 | 461 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy11g1722 | 1629 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy11g1722 | 1629 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy11g1722 | 1629 | PRINTS | Myosin heavy chain signature | 200 | 227 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy11g1722 | 1629 | PRINTS | Myosin heavy chain signature | 494 | 522 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy11g1722 | 1629 | SMART | DIL_2 | 1450 | 1557 | IPR002710 | - | |
| Lcy11g1722 | 1629 | ProSiteProfiles | IQ motif profile. | 834 | 861 | - | - | |
| Lcy11g1722 | 1629 | ProSiteProfiles | IQ motif profile. | 784 | 813 | - | - | |
| Lcy11g1722 | 1629 | FunFam | unconventional myosin-Va | 860 | 907 | - | - | |
| Lcy11g1722 | 1629 | SMART | MYSc_2a | 56 | 759 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy11g1722 | 1629 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 33 | 812 | IPR027417 | - | |
| Lcy11g1722 | 1629 | Gene3D | - | 443 | 649 | - | - | |
| Lcy11g1722 | 1629 | ProSiteProfiles | Dilute domain profile. | 1281 | 1575 | IPR002710 | - | |
| Lcy11g1722 | 1629 | CDD | MyosinXI_CBD | 1232 | 1598 | IPR037975 | GO:0007015(InterPro) | |
| Lcy11g1722 | 1629 | Coils | Coil | 966 | 1038 | - | - | |
| Lcy11g1722 | 1629 | CDD | MYSc_Myo11 | 76 | 746 | IPR036018 | - | |
| Lcy11g1722 | 1629 | FunFam | Class V myosin | 451 | 594 | - | - | |
| Lcy11g1722 | 1629 | Pfam | DIL domain | 1450 | 1554 | IPR002710 | - | |
| Lcy11g1722 | 1629 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 812 | 909 | IPR027417 | - | |
| Lcy11g1722 | 1629 | Gene3D | - | 693 | 756 | - | - | |
| Lcy11g1722 | 1629 | ProSiteProfiles | Myosin motor domain profile. | 62 | 758 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy11g1722 | 1629 | Pfam | Myosin head (motor domain) | 64 | 746 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy11g1722 | 1629 | ProSiteProfiles | IQ motif profile. | 857 | 886 | - | - | |
| Lcy11g1722 | 1629 | MobiDBLite | consensus disorder prediction | 1035 | 1091 | - | - | |
| Lcy11g1722 | 1629 | FunFam | unconventional myosin-Va | 811 | 859 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g1722 | Lcy-Chr11:41071440 | Lcy3g1429 | Lcy-Chr3:41012173 | 0 | dispersed | |
| Lcy11g1722 | Lcy-Chr11:41071440 | Lcy3g1285 | Lcy-Chr3:38810644 | 1.79E-86 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy11g1722 | K10357 | - | csv:101221506 | 1749.56 |